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5'-O-dimethoxytrityl-deoxythymidine

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Name

5'-O-dimethoxytrityl-deoxythymidine

EINECS 255-003-1
CAS No. 40615-39-2 Density 1.272 g/cm3
PSA 112.01000 LogP 3.51930
Solubility 3mg/L at 20℃ Melting Point 114-116 °C (subl.)(lit.)
Formula C31H32N2O7 Boiling Point 618.41°C (rough estimate)
Molecular Weight 544.604 Flash Point N/A
Transport Information N/A Appearance White powder
Safety 26-36 Risk Codes 36/37/38
Molecular Structure Molecular Structure of 40615-39-2 (5'-O-Dimethoxytrityl-deoxythymidine) Hazard Symbols IrritantXi
Synonyms

Thymidine,5'-O-[a,a-bis(p-methoxyphenyl)benzyl]- (7CI);5'-O-(4,4'-Dimethoxytrityl)-2'-deoxythymidine;5'-O-(4,4'-Dimethoxytrityl)thymidine;5'-O-(Di-p-methoxytrityl)thymidine;5'-O-(p,p'-Dimethoxytrityl)thymidine;

Article Data 163

5'-O-dimethoxytrityl-deoxythymidine Synthetic route

40615-36-9

4,4'-dimethoxytrityl chloride

50-89-5

thymidine

40615-39-2

5'-O-(4-4'-dimethoxytrityl)thymidine

Conditions
ConditionsYield
With pyridine; dmap at 20℃; for 5h;97%
With pyridine; dmap at 20℃; for 24h;96%
With pyridine at 20℃; for 12h;96%
289712-59-0

2-Azidomethyl-benzoic acid (2R,3S,5R)-2-[bis-(4-methoxy-phenyl)-phenyl-methoxymethyl]-5-(5-methyl-2,4-dioxo-3,4-dihydro-2H-pyrimidin-1-yl)-tetrahydro-furan-3-yl ester

40615-39-2

5'-O-(4-4'-dimethoxytrityl)thymidine

Conditions
ConditionsYield
With diphenyl(methyl)phosphine In 1,4-dioxane; water at 20℃; for 0.25h; Product distribution; Further Variations:; Catalysts; Reaction partners; Reagents; Solvents; reaction times;96%

bis(4-methoxyphenyl)phenylmethylium tetrafluoroborate

50-89-5

thymidine

40615-39-2

5'-O-(4-4'-dimethoxytrityl)thymidine

Conditions
ConditionsYield
With 2,6-di-tert-butyl-4-methylpyridine In nitromethane at 20℃; for 17h; or pyridine, other solvents;93%
With lithium carbonate; N-ethyl-N,N-diisopropylamine In tetrahydrofuran at 20℃; Heating;74%
40615-36-9

4,4'-dimethoxytrityl chloride

50-89-5

thymidine

A

40615-39-2

5'-O-(4-4'-dimethoxytrityl)thymidine

B

52417-09-1

3'-O-(4,4'-dimethoxytriphenylmethyl)-5'-O-fluorenylmethoxycarbonylthymidine

Conditions
ConditionsYield
With pyridine at 20℃; for 1.5h;A 93%
B n/a
With pyridine at 20℃; for 1.5h;A 93%
B n/a
With pyridine at 20℃; for 1.5h;A 93%
B n/a
110-86-1

pyridine

40615-36-9

4,4'-dimethoxytrityl chloride

50-89-5

thymidine

A

847699-97-2

benzoic acid 5-(4-benzoylamino-5-methyl-2-oxo-2H-pyrimidin-1-yl)-2-[bis-(4-methoxy-phenyl)-phenyl-methoxymethyl]-tetrahydro-furan-3-yl ester

B

40615-39-2

5'-O-(4-4'-dimethoxytrityl)thymidine

Conditions
ConditionsYield
at 20℃; for 1.5h;A n/a
B 93%
40615-36-9

4,4'-dimethoxytrityl chloride

A

40615-39-2

5'-O-(4-4'-dimethoxytrityl)thymidine

B

52417-09-1

3'-O-(4,4'-dimethoxytriphenylmethyl)-5'-O-fluorenylmethoxycarbonylthymidine

Conditions
ConditionsYield
With pyridine at 20℃; for 0.5h;A 93%
B n/a
With pyridine at 20℃; for 1.5h;A 93%
B n/a
342890-03-3

1-((2R,4S,5R)-5-[Bis-(4-methoxy-phenyl)-phenyl-methoxymethyl]-4-{[(E)-2-(3-hydroxy-naphthalen-2-yl)-vinyl]-diisopropyl-silanyloxy}-tetrahydro-furan-2-yl)-5-methyl-1H-pyrimidine-2,4-dione

A

40615-39-2

5'-O-(4-4'-dimethoxytrityl)thymidine

B

2,2-diisopropyl-2H-1-oxa-2-sila-anthracene

Conditions
ConditionsYield
In methanol for 0.75h; Irradiation;A n/a
B 92%
In methanol for 0.75h; Irradiation;A 92%
B 91%
3868-27-7

triethylammonium 5'-O-dimethoxytritylthymidine 3'-H-phosphonate

40615-39-2

5'-O-(4-4'-dimethoxytrityl)thymidine

Conditions
ConditionsYield
With pivaloyl chloride; ethylene glycol at 0℃; for 0.333333h; Hydrolysis;91%

5'-O-(4,4'-dimethoxytrityl)-N3-(triphenylmethylsulfenyl)thymidine

40615-39-2

5'-O-(4-4'-dimethoxytrityl)thymidine

Conditions
ConditionsYield
With tri-n-butyl-tin hydride In toluene at 115℃; for 0.0833333h;82%

5'-dimethoxytrityl thymidine 3'-methylphosphinate

40615-39-2

5'-O-(4-4'-dimethoxytrityl)thymidine

Conditions
ConditionsYield
With tetrabutyl ammonium fluoride In tetrahydrofuran; water for 3h; Ambient temperature;73%

5'-O-dimethoxytrityl-deoxythymidine Chemical Properties

Molecular Structure of 5'-O-dimethoxytrityl-deoxythymidine (CAS NO.40615-39-2):

IUPAC Name: 1-[(2R,4S,5R)-5-[[bis(4-methoxyphenyl)-phenylmethoxy]methyl]-4-hydroxyoxolan-2-yl]-5-methylpyrimidine-2,4-dione
Cas register number: 40615-39-2
Molecular formula: C31H32N2O6
Molecular Weight: 528.6
Density: 1.272 g/cm3 
Index of Refraction: 1.602 
Molar Refractivity: 146.9 cm
Molar Volume: 427.8 cm3 
Polarizability: 58.23×10-24cm3 
Surface Tension: 51.6 dyne/cm 
Appearance: White Powder
Product Categories: Biochemistry;Nucleosides and their analogs;Nucleosides, Nucleotides & Related Reagents;Bases & Related Reagents;Carbohydrates & Derivatives;Nucleotides.

5'-O-dimethoxytrityl-deoxythymidine Safety Profile

Safety Statements  about 5'-O-dimethoxytrityl-deoxythymidine (CAS NO.40615-39-2):
Hazard Codes: 
Xi:
R36/37/38: Irritating to eyes, respiratory system and skin.
S26: In case of contact with eyes, rinse immediately with plenty of water and seek medical advice.
S36: Wear suitable protective clothing.
F1: Sensitive to air and humidity.
F3: Hygroscopic.
F10: Keep under argon.
WGK Germany: 3
Hazard Note: Irritant

5'-O-dimethoxytrityl-deoxythymidine Specification

  5'-O-dimethoxytrityl-deoxythymidine , its cas register number is 40615-39-2. It also can be called 5’-O-[bis(4-methoxyphenyl)phenylmethyl]-thymidin ; 5'-Dimethoxytrityl thymidine ; 5'-O-(4,4'-dimethoxytrityl)-2'-deoxythymidine ; 5'-O-[Bis(4-methoxyphenyl)benzyl]-2'-deoxythymidine ; 5'-O-(4,4'-dimethoxytrityl)thymidine ; 5-O-(4,4-dimethoxytrityl)thymidine ; 5'-O-dimethoxytrityl-deoxythymidine ; 5'-O-(dimethoxytrityl)-thymidine . Some useful informationabout Handling and Storage: Wash thoroughly after handling. Remove contaminated clothing and wash before reuse.Avoid contact with eyes, skin, and clothing. Avoid ingestion and inhalation.Keep refrigerated. (Store below 4°C/39°F.) Keep container closed when not in use. Store in a dry area. 

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