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Negamycin, an aminoglycoside antibiotic, is produced by the bacterium Streptomyces platensis. It possesses potent antibacterial properties against a broad spectrum of pathogens. By binding to the bacterial 30S ribosomal subunit, negamycin disrupts protein synthesis, leading to cell death. This mechanism of action makes it effective against bacteria resistant to other antibiotics, and it has shown promise for the treatment of multidrug-resistant infections. Ongoing research aims to explore its potential clinical applications and develop new derivatives with improved properties.

33404-78-3

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33404-78-3 Usage

Uses

Used in Pharmaceutical Industry:
Negamycin is used as an antibiotic for the treatment of bacterial infections. Its potent antibacterial properties and effectiveness against multidrug-resistant bacteria make it a valuable asset in combating resistant infections.
Used in Research and Development:
Negamycin is used as a subject of research for exploring its potential clinical applications and developing new derivatives with improved properties. This research aims to enhance its therapeutic efficacy and expand its use in treating various bacterial infections.

Check Digit Verification of cas no

The CAS Registry Mumber 33404-78-3 includes 8 digits separated into 3 groups by hyphens. The first part of the number,starting from the left, has 5 digits, 3,3,4,0 and 4 respectively; the second part has 2 digits, 7 and 8 respectively.
Calculate Digit Verification of CAS Registry Number 33404-78:
(7*3)+(6*3)+(5*4)+(4*0)+(3*4)+(2*7)+(1*8)=93
93 % 10 = 3
So 33404-78-3 is a valid CAS Registry Number.
InChI:InChI=1/C9H20N4O4/c1-13(5-9(16)17)12-8(15)3-6(11)2-7(14)4-10/h6-7,14H,2-5,10-11H2,1H3,(H,12,15)(H,16,17)

33404-78-3SDS

SAFETY DATA SHEETS

According to Globally Harmonized System of Classification and Labelling of Chemicals (GHS) - Sixth revised edition

Version: 1.0

Creation Date: Aug 17, 2017

Revision Date: Aug 17, 2017

1.Identification

1.1 GHS Product identifier

Product name 2-[[(3,6-diamino-5-hydroxyhexanoyl)amino]-methylamino]acetic acid

1.2 Other means of identification

Product number -
Other names Negamycin

1.3 Recommended use of the chemical and restrictions on use

Identified uses For industry use only.
Uses advised against no data available

1.4 Supplier's details

1.5 Emergency phone number

Emergency phone number -
Service hours Monday to Friday, 9am-5pm (Standard time zone: UTC/GMT +8 hours).

More Details:33404-78-3 SDS

33404-78-3Synthetic route

(R)-tert-butyl (R)-5-[2-(tert-butoxycarbonylamino)-3-{(tert-butoxycarbonylmethyl)methylaminocarbamoyl}propyl]-2,2-dimethyloxazolidine-3-carboxylate
1037825-22-1

(R)-tert-butyl (R)-5-[2-(tert-butoxycarbonylamino)-3-{(tert-butoxycarbonylmethyl)methylaminocarbamoyl}propyl]-2,2-dimethyloxazolidine-3-carboxylate

negamycin
33404-78-3

negamycin

Conditions
ConditionsYield
With hydrogenchloride In 1,4-dioxane at 0℃; for 2h;98%
[N'-((3R,5R)-3-Amino-6-benzyloxycarbonylamino-5-hydroxy-hexanoyl)-N-methyl-hydrazino]-acetic acid benzyl ester

[N'-((3R,5R)-3-Amino-6-benzyloxycarbonylamino-5-hydroxy-hexanoyl)-N-methyl-hydrazino]-acetic acid benzyl ester

negamycin
33404-78-3

negamycin

Conditions
ConditionsYield
With hydrogen; acetic acid; palladium on activated charcoal In methanol under 2250.2 Torr; for 12h; Ambient temperature;96%
2-((3R,5R)-2-benzyloxycarbonyl-5-(chloromethyl)isoxazolidinyl)acetic acid
1613376-41-2

2-((3R,5R)-2-benzyloxycarbonyl-5-(chloromethyl)isoxazolidinyl)acetic acid

negamycin
33404-78-3

negamycin

Conditions
ConditionsYield
With palladium 10% on activated carbon; hydrogen; acetic acid In methanol; water at 20℃; under 2068.65 Torr; for 24h;94%
{N'-[(3R,5R)-6-Azido-5-hydroxy-3-((4S,5R)-2-oxo-4,5-diphenyl-oxazolidin-3-yl)-hexanoyl]-N-methyl-hydrazino}-acetic acid benzyl ester

{N'-[(3R,5R)-6-Azido-5-hydroxy-3-((4S,5R)-2-oxo-4,5-diphenyl-oxazolidin-3-yl)-hexanoyl]-N-methyl-hydrazino}-acetic acid benzyl ester

negamycin
33404-78-3

negamycin

Conditions
ConditionsYield
With hydrogen; acetic acid; palladium on activated charcoal In methanol under 2068.6 Torr; for 8h; Ambient temperature;91%
[N'-((3R,5R)-3,6-Diazido-5-benzyloxymethoxy-hexanoyl)-N-methyl-hydrazino]-acetic acid benzyl ester
119138-84-0

[N'-((3R,5R)-3,6-Diazido-5-benzyloxymethoxy-hexanoyl)-N-methyl-hydrazino]-acetic acid benzyl ester

negamycin
33404-78-3

negamycin

Conditions
ConditionsYield
With hydrogen; palladium on activated charcoal In methanol; acetic acid89%
[N'-(6-amino-3-tert-butoxycarbonylamino-5-hydroxy-hexanoyl)-N-methyl-hydrazino]-acetic acid tert-butyl ester
540721-28-6

[N'-(6-amino-3-tert-butoxycarbonylamino-5-hydroxy-hexanoyl)-N-methyl-hydrazino]-acetic acid tert-butyl ester

negamycin
33404-78-3

negamycin

Conditions
ConditionsYield
With hydrogenchloride In 1,4-dioxane at 20℃; for 9h;78%
benzyl (3R,5R)-<2-<methyl>isoxazolidin-3-yl>acetyl>-1-methylhydrazino>acetate
103321-73-9

benzyl (3R,5R)-<2-isoxazolidin-3-yl>acetyl>-1-methylhydrazino>acetate

negamycin
33404-78-3

negamycin

Conditions
ConditionsYield
With hydrogen; palladium on activated charcoal In methanol; acetic acid under 2280 Torr; for 12h;75%
With methanol; hydrogen; acetic acid; palladium on activated charcoal under 2280 Torr; for 12h;75%
(2S,3R,6R)-6-[(R)-2-(Benzyl-benzyloxycarbonyl-amino)-3-(N'-benzyloxycarbonylmethyl-N'-methyl-hydrazinocarbonyl)-propyl]-2,3-diphenyl-morpholine-4-carboxylic acid benzyl ester
461385-14-8

(2S,3R,6R)-6-[(R)-2-(Benzyl-benzyloxycarbonyl-amino)-3-(N'-benzyloxycarbonylmethyl-N'-methyl-hydrazinocarbonyl)-propyl]-2,3-diphenyl-morpholine-4-carboxylic acid benzyl ester

negamycin
33404-78-3

negamycin

Conditions
ConditionsYield
With hydrogen; acetic acid; palladium on activated charcoal In methanol; water at 75℃; under 2068.65 Torr; for 4.25h;75%
{N'-[(3R,5R)-3,6-Diazido-5-(tert-butyl-dimethyl-silanyloxy)-hexanoyl]-N-methyl-hydrazino}-acetic acid benzyl ester
119688-96-9

{N'-[(3R,5R)-3,6-Diazido-5-(tert-butyl-dimethyl-silanyloxy)-hexanoyl]-N-methyl-hydrazino}-acetic acid benzyl ester

negamycin
33404-78-3

negamycin

Conditions
ConditionsYield
With hydrogen; acetic acid; palladium on activated charcoal In methanol at 20℃;72%
With hydrogen; palladium on activated charcoal In 1,4-dioxane; hydrogenchloride
tert-butyl 2-(2-((3R,5R)-6-azido-5-((tert-butyldimethylsilyl)oxy)-3-(1,1-dimethylethylsulfinamido)hexanoyl)-1-methylhydrazinyl)acetate

tert-butyl 2-(2-((3R,5R)-6-azido-5-((tert-butyldimethylsilyl)oxy)-3-(1,1-dimethylethylsulfinamido)hexanoyl)-1-methylhydrazinyl)acetate

negamycin
33404-78-3

negamycin

Conditions
ConditionsYield
Stage #1: tert-butyl 2-(2-((3R,5R)-6-azido-5-((tert-butyldimethylsilyl)oxy)-3-(1,1-dimethylethylsulfinamido)hexanoyl)-1-methylhydrazinyl)acetate With palladium 10% on activated carbon; hydrogen In methanol at 20℃; for 4h;
Stage #2: With hydrogenchloride In methanol; water at 20℃; for 2h;
68%
benzyl 2-(1-methylhydrazinyl)acetate
55501-33-2

benzyl 2-(1-methylhydrazinyl)acetate

(3R,5R)-6-Azido-3-benzyloxycarbonylamino-5-(tetrahydro-pyran-2-yloxy)-hexanoic acid
81601-97-0

(3R,5R)-6-Azido-3-benzyloxycarbonylamino-5-(tetrahydro-pyran-2-yloxy)-hexanoic acid

negamycin
33404-78-3

negamycin

Conditions
ConditionsYield
Yield given. Multistep reaction;
2-phenyl-1,3-dioxan-4-carbaldehyde
102794-92-3

2-phenyl-1,3-dioxan-4-carbaldehyde

2-(trimethylsilyl)ethyl α-(dimethoxyphosphoryl)-N-(tert-butyloxycarbonyl)glycinate
142602-45-7

2-(trimethylsilyl)ethyl α-(dimethoxyphosphoryl)-N-(tert-butyloxycarbonyl)glycinate

A

negamycin
33404-78-3

negamycin

B

(Z)-2-tert-Butoxycarbonylamino-3-(2-phenyl-[1,3]dioxan-4-yl)-acrylic acid 2-trimethylsilanyl-ethyl ester
142602-50-4, 145958-03-8

(Z)-2-tert-Butoxycarbonylamino-3-(2-phenyl-[1,3]dioxan-4-yl)-acrylic acid 2-trimethylsilanyl-ethyl ester

Conditions
ConditionsYield
With 1,8-diazabicyclo[5.4.0]undec-7-ene In dichloromethane for 2h; Ambient temperature; Yield given. Yields of byproduct given. Title compound not separated from byproducts;
(N'-{(3R,5R)-6-Amino-3-[benzyl-((R)-1-phenyl-ethyl)-amino]-5-hydroxy-hexanoyl}-N-methyl-hydrazino)-acetic acid benzyl ester

(N'-{(3R,5R)-6-Amino-3-[benzyl-((R)-1-phenyl-ethyl)-amino]-5-hydroxy-hexanoyl}-N-methyl-hydrazino)-acetic acid benzyl ester

negamycin
33404-78-3

negamycin

Conditions
ConditionsYield
With hydrogen; palladium dihydroxide under 4560 Torr; Ambient temperature; Yield given;
With 20 % Pd(OH)2/C; hydrogen; acetic acid In methanol at 20℃; under 3800.26 Torr; for 22h;331 mg
C12H24N6O3Si
942292-44-6

C12H24N6O3Si

negamycin
33404-78-3

negamycin

Conditions
ConditionsYield
Multi-step reaction with 2 steps
1.1: ethyl chloroformate; Et3N / toluene / -5 °C
1.2: 65 percent / toluene
2.1: 72 percent / H2; aq. AcOH / Pd/C / methanol / 20 °C
View Scheme
(-)-tert-butoxycarbonyl-(R)-3-amino-5-hexenoic acid

(-)-tert-butoxycarbonyl-(R)-3-amino-5-hexenoic acid

negamycin
33404-78-3

negamycin

Conditions
ConditionsYield
Multi-step reaction with 10 steps
1: 88 percent / I2; KI; aq. NaHCO3 / CH2Cl2 / 2.5 h / 20 °C
2: NaN3 / dimethylformamide / 4 h / 55 °C
3: 89 percent / aq. LiOH / methanol / 2 h / 20 °C
4: imidazole / CH2Cl2 / 18 h / 20 °C
5: 80 percent / aq. K2CO3 / methanol / 2 h / 20 °C
6: pyridine / CH2Cl2 / 24 h / 20 °C
7: 96 percent / dimethylformamide / 3 h / 20 °C
8: 70 percent / TBAF / tetrahydrofuran / 1.25 h / 20 °C
9: 90 percent / H2 / Pd/C / ethyl acetate / 3 h / 20 °C
10: 78 percent / aq. HCl / dioxane / 9 h / 20 °C
View Scheme
(2-azidomethyl-6-oxo-tetrahydro-pyran-4-yl)-carbamic acid tert-butyl ester
540721-22-0

(2-azidomethyl-6-oxo-tetrahydro-pyran-4-yl)-carbamic acid tert-butyl ester

negamycin
33404-78-3

negamycin

Conditions
ConditionsYield
Multi-step reaction with 8 steps
1: 89 percent / aq. LiOH / methanol / 2 h / 20 °C
2: imidazole / CH2Cl2 / 18 h / 20 °C
3: 80 percent / aq. K2CO3 / methanol / 2 h / 20 °C
4: pyridine / CH2Cl2 / 24 h / 20 °C
5: 96 percent / dimethylformamide / 3 h / 20 °C
6: 70 percent / TBAF / tetrahydrofuran / 1.25 h / 20 °C
7: 90 percent / H2 / Pd/C / ethyl acetate / 3 h / 20 °C
8: 78 percent / aq. HCl / dioxane / 9 h / 20 °C
View Scheme
(2-iodomethyl-6-oxo-tetrahydro-pyran-4-yl)-carbamic acid tert-butyl ester
551964-17-1

(2-iodomethyl-6-oxo-tetrahydro-pyran-4-yl)-carbamic acid tert-butyl ester

negamycin
33404-78-3

negamycin

Conditions
ConditionsYield
Multi-step reaction with 9 steps
1: NaN3 / dimethylformamide / 4 h / 55 °C
2: 89 percent / aq. LiOH / methanol / 2 h / 20 °C
3: imidazole / CH2Cl2 / 18 h / 20 °C
4: 80 percent / aq. K2CO3 / methanol / 2 h / 20 °C
5: pyridine / CH2Cl2 / 24 h / 20 °C
6: 96 percent / dimethylformamide / 3 h / 20 °C
7: 70 percent / TBAF / tetrahydrofuran / 1.25 h / 20 °C
8: 90 percent / H2 / Pd/C / ethyl acetate / 3 h / 20 °C
9: 78 percent / aq. HCl / dioxane / 9 h / 20 °C
View Scheme
6-azido-3-tert-butoxycarbonylamino-5-hydroxy-hexanoic acid
551964-18-2

6-azido-3-tert-butoxycarbonylamino-5-hydroxy-hexanoic acid

negamycin
33404-78-3

negamycin

Conditions
ConditionsYield
Multi-step reaction with 7 steps
1: imidazole / CH2Cl2 / 18 h / 20 °C
2: 80 percent / aq. K2CO3 / methanol / 2 h / 20 °C
3: pyridine / CH2Cl2 / 24 h / 20 °C
4: 96 percent / dimethylformamide / 3 h / 20 °C
5: 70 percent / TBAF / tetrahydrofuran / 1.25 h / 20 °C
6: 90 percent / H2 / Pd/C / ethyl acetate / 3 h / 20 °C
7: 78 percent / aq. HCl / dioxane / 9 h / 20 °C
View Scheme
6-azido-3-tert-butoxycarbonylamino-5-(tert-butyl-dimethyl-silanyloxy)-hexanoic acid
540721-23-1

6-azido-3-tert-butoxycarbonylamino-5-(tert-butyl-dimethyl-silanyloxy)-hexanoic acid

negamycin
33404-78-3

negamycin

Conditions
ConditionsYield
Multi-step reaction with 5 steps
1: pyridine / CH2Cl2 / 24 h / 20 °C
2: 96 percent / dimethylformamide / 3 h / 20 °C
3: 70 percent / TBAF / tetrahydrofuran / 1.25 h / 20 °C
4: 90 percent / H2 / Pd/C / ethyl acetate / 3 h / 20 °C
5: 78 percent / aq. HCl / dioxane / 9 h / 20 °C
View Scheme
[N'-(6-azido-3-tert-butoxycarbonylamino-5-hydroxy-hexanoyl)-N-methyl-hydrazino]-acetic acid tert-butyl ester
540721-27-5

[N'-(6-azido-3-tert-butoxycarbonylamino-5-hydroxy-hexanoyl)-N-methyl-hydrazino]-acetic acid tert-butyl ester

negamycin
33404-78-3

negamycin

Conditions
ConditionsYield
Multi-step reaction with 2 steps
1: 90 percent / H2 / Pd/C / ethyl acetate / 3 h / 20 °C
2: 78 percent / aq. HCl / dioxane / 9 h / 20 °C
View Scheme
C23H48N4O5Si2

C23H48N4O5Si2

negamycin
33404-78-3

negamycin

Conditions
ConditionsYield
Multi-step reaction with 6 steps
1: 80 percent / aq. K2CO3 / methanol / 2 h / 20 °C
2: pyridine / CH2Cl2 / 24 h / 20 °C
3: 96 percent / dimethylformamide / 3 h / 20 °C
4: 70 percent / TBAF / tetrahydrofuran / 1.25 h / 20 °C
5: 90 percent / H2 / Pd/C / ethyl acetate / 3 h / 20 °C
6: 78 percent / aq. HCl / dioxane / 9 h / 20 °C
View Scheme
{N'-[6-azido-3-tert-butoxycarbonylamino-5-(tert-butyl-dimethyl-silanyloxy)-hexanoyl]-N-methyl-hydrazino}-acetic acid tert-butyl ester
540721-26-4

{N'-[6-azido-3-tert-butoxycarbonylamino-5-(tert-butyl-dimethyl-silanyloxy)-hexanoyl]-N-methyl-hydrazino}-acetic acid tert-butyl ester

negamycin
33404-78-3

negamycin

Conditions
ConditionsYield
Multi-step reaction with 3 steps
1: 70 percent / TBAF / tetrahydrofuran / 1.25 h / 20 °C
2: 90 percent / H2 / Pd/C / ethyl acetate / 3 h / 20 °C
3: 78 percent / aq. HCl / dioxane / 9 h / 20 °C
View Scheme
6-azido-3-tert-butoxycarbonylamino-5-(tert-butyl-dimethyl-silanyloxy)-hexanoic acid pentafluorophenyl ester
540721-25-3

6-azido-3-tert-butoxycarbonylamino-5-(tert-butyl-dimethyl-silanyloxy)-hexanoic acid pentafluorophenyl ester

negamycin
33404-78-3

negamycin

Conditions
ConditionsYield
Multi-step reaction with 4 steps
1: 96 percent / dimethylformamide / 3 h / 20 °C
2: 70 percent / TBAF / tetrahydrofuran / 1.25 h / 20 °C
3: 90 percent / H2 / Pd/C / ethyl acetate / 3 h / 20 °C
4: 78 percent / aq. HCl / dioxane / 9 h / 20 °C
View Scheme
2R,5R,6S-2-(2'-(benzylamino)pent-4'-enyl)-5,6-diphenylmorpholine-4-carboxylic acid benzyl ester

2R,5R,6S-2-(2'-(benzylamino)pent-4'-enyl)-5,6-diphenylmorpholine-4-carboxylic acid benzyl ester

negamycin
33404-78-3

negamycin

Conditions
ConditionsYield
Multi-step reaction with 5 steps
1.1: 80 percent / NaOH / dioxane; H2O / 12 h / 0 - 5 °C
2.1: O3 / methanol; CH2Cl2 / -78 °C
2.2: 73 percent / (C6H5)3P / methanol; CH2Cl2 / 20 °C
3.1: 97 percent / pyridinium dichromate / dimethylformamide / 12 h / 20 °C
4.1: 80 percent / 1-hydroxybenzotriazole; (C2H5)3N; 1-ethyl-3-(3-dimethylaminopropyl)carbodiimide / CH2Cl2 / 12 h / 20 °C
5.1: 75 percent / CH3COOH; H2 / Pd/C / methanol; H2O / 4.25 h / 75 °C / 2068.65 Torr
View Scheme
2R,2'R,5R,6S-2-(2'-((benzyl)(benzyloxycarbonyl)amino)-4'-oxobutyl)-5,6-diphenylmorpholine-4-carboxylic acid benzyl ester
461385-12-6

2R,2'R,5R,6S-2-(2'-((benzyl)(benzyloxycarbonyl)amino)-4'-oxobutyl)-5,6-diphenylmorpholine-4-carboxylic acid benzyl ester

negamycin
33404-78-3

negamycin

Conditions
ConditionsYield
Multi-step reaction with 3 steps
1: 97 percent / pyridinium dichromate / dimethylformamide / 12 h / 20 °C
2: 80 percent / 1-hydroxybenzotriazole; (C2H5)3N; 1-ethyl-3-(3-dimethylaminopropyl)carbodiimide / CH2Cl2 / 12 h / 20 °C
3: 75 percent / CH3COOH; H2 / Pd/C / methanol; H2O / 4.25 h / 75 °C / 2068.65 Torr
View Scheme
2R,5R,6S-2-(2'-((benzyl)(benzyloxycarbonyl)amino)pent-4'-enyl)-5,6-diphenylmorpholine-4-carboxylic acid benzyl ester

2R,5R,6S-2-(2'-((benzyl)(benzyloxycarbonyl)amino)pent-4'-enyl)-5,6-diphenylmorpholine-4-carboxylic acid benzyl ester

negamycin
33404-78-3

negamycin

Conditions
ConditionsYield
Multi-step reaction with 4 steps
1.1: O3 / methanol; CH2Cl2 / -78 °C
1.2: 73 percent / (C6H5)3P / methanol; CH2Cl2 / 20 °C
2.1: 97 percent / pyridinium dichromate / dimethylformamide / 12 h / 20 °C
3.1: 80 percent / 1-hydroxybenzotriazole; (C2H5)3N; 1-ethyl-3-(3-dimethylaminopropyl)carbodiimide / CH2Cl2 / 12 h / 20 °C
4.1: 75 percent / CH3COOH; H2 / Pd/C / methanol; H2O / 4.25 h / 75 °C / 2068.65 Torr
View Scheme
2R,2'R,5R,6S-2-(2'-((benzyl)(benzyloxycarbonyl)amino)-3'-carboxypropyl)-5,6-diphenylmorpholine-4-carboxylic acid benzyl ester
461385-13-7

2R,2'R,5R,6S-2-(2'-((benzyl)(benzyloxycarbonyl)amino)-3'-carboxypropyl)-5,6-diphenylmorpholine-4-carboxylic acid benzyl ester

negamycin
33404-78-3

negamycin

Conditions
ConditionsYield
Multi-step reaction with 2 steps
1: 80 percent / 1-hydroxybenzotriazole; (C2H5)3N; 1-ethyl-3-(3-dimethylaminopropyl)carbodiimide / CH2Cl2 / 12 h / 20 °C
2: 75 percent / CH3COOH; H2 / Pd/C / methanol; H2O / 4.25 h / 75 °C / 2068.65 Torr
View Scheme
(R)-5-{(R)-2-[Benzyl-((R)-1-phenyl-ethyl)-amino]-3-carboxy-propyl}-2,2-dimethyl-oxazolidine-3-carboxylic acid tert-butyl ester
181772-92-9

(R)-5-{(R)-2-[Benzyl-((R)-1-phenyl-ethyl)-amino]-3-carboxy-propyl}-2,2-dimethyl-oxazolidine-3-carboxylic acid tert-butyl ester

negamycin
33404-78-3

negamycin

Conditions
ConditionsYield
Multi-step reaction with 3 steps
1: 96 percent / DCC, Et3N, HOBt / Ambient temperature
2: aq. TFA / tetrahydrofuran
3: H2 / Pd(OH)2/C / 4560 Torr / Ambient temperature
View Scheme
Multi-step reaction with 4 steps
1.1: triethylamine / dichloromethane / 0.17 h / -15 °C / Inert atmosphere
2.1: triethylamine / dichloromethane / 0.58 h / -15 - 0 °C / Inert atmosphere
3.1: trifluoroacetic acid / 0.5 h / 0 - 20 °C
3.2: 16 h / 20 °C
3.3: pH 9
4.1: 20 % Pd(OH)2/C; hydrogen; acetic acid / methanol / 22 h / 20 °C / 3800.26 Torr
View Scheme
Multi-step reaction with 3 steps
1.1: benzotriazol-1-ol; triethylamine; dicyclohexyl-carbodiimide / dichloromethane / 5.25 h / 0 - 20 °C / Inert atmosphere
2.1: trifluoroacetic acid / 0.5 h / 0 - 20 °C
2.2: 16 h / 20 °C
2.3: pH 9
3.1: 20 % Pd(OH)2/C; hydrogen; acetic acid / methanol / 22 h / 20 °C / 3800.26 Torr
View Scheme
3''-pentyl (R,R,R)-3-[N-benzyl-N-(α-methylbenzyl)amino]-4-[2',2';-dimethyl-N(3')-tert-butoxycarbonyl-1',3'-oxazolidin-5'-yl]butanoate
181772-74-7

3''-pentyl (R,R,R)-3-[N-benzyl-N-(α-methylbenzyl)amino]-4-[2',2';-dimethyl-N(3')-tert-butoxycarbonyl-1',3'-oxazolidin-5'-yl]butanoate

negamycin
33404-78-3

negamycin

Conditions
ConditionsYield
Multi-step reaction with 4 steps
1: 82 percent / aq. LiOH / methanol; tetrahydrofuran
2: 96 percent / DCC, Et3N, HOBt / Ambient temperature
3: aq. TFA / tetrahydrofuran
4: H2 / Pd(OH)2/C / 4560 Torr / Ambient temperature
View Scheme
Multi-step reaction with 5 steps
1.1: lithium hydroxide monohydrate; water / tetrahydrofuran; methanol / 24 h / Reflux
1.2: 20 °C
2.1: triethylamine / dichloromethane / 0.17 h / -15 °C / Inert atmosphere
3.1: triethylamine / dichloromethane / 0.58 h / -15 - 0 °C / Inert atmosphere
4.1: trifluoroacetic acid / 0.5 h / 0 - 20 °C
4.2: 16 h / 20 °C
4.3: pH 9
5.1: 20 % Pd(OH)2/C; hydrogen; acetic acid / methanol / 22 h / 20 °C / 3800.26 Torr
View Scheme
Multi-step reaction with 4 steps
1.1: lithium hydroxide monohydrate; water / tetrahydrofuran; methanol / 24 h / Reflux
1.2: 20 °C
2.1: benzotriazol-1-ol; triethylamine; dicyclohexyl-carbodiimide / dichloromethane / 5.25 h / 0 - 20 °C / Inert atmosphere
3.1: trifluoroacetic acid / 0.5 h / 0 - 20 °C
3.2: 16 h / 20 °C
3.3: pH 9
4.1: 20 % Pd(OH)2/C; hydrogen; acetic acid / methanol / 22 h / 20 °C / 3800.26 Torr
View Scheme
negamycin
33404-78-3

negamycin

δ-Hydroxy-β-lysin

δ-Hydroxy-β-lysin

Conditions
ConditionsYield
With hydrogenchloride Heating;
negamycin
33404-78-3

negamycin

2-benzyloxycarbonylsulfanyl-4,6-dimethyl-pyrimidine
42116-21-2

2-benzyloxycarbonylsulfanyl-4,6-dimethyl-pyrimidine

Di-N-Z-negamycin

Di-N-Z-negamycin

Conditions
ConditionsYield
With triethylamine In 1,4-dioxane; water

33404-78-3Relevant articles and documents

Full-synthesizing method of natural product (+)-negamycin

-

Paragraph 0033; 0034; 0056; 0057; 0058, (2017/09/18)

The invention belongs to the technical field of organic synthesis, and specifically relates to a full-synthesizing method of natural product(+)-negamycin. The method utilizes Mannich reaction to construct a C3 position chiral center, nitrine functional group introduction is achieved in a later period of a synthetic route, and use of a lot of explosive and highly-toxic product of azide is avoided; (R)-(+)-3-hydroxyl-4-chlorobutyric acid ethyl ester, an Ellman reagent of (R)-(+)-methyl propane-2-sulfinamide and Mannich reaction are utilized to construct a C4 position chiral center, full synthesis is achieved through simple 8-step reaction, and total yield reaches 30%. The full-synthesizing method disclosed by the invention has the short synthetic route and simple after treatment, and raw material sources are provided for development of antibiotic medicines based on the (+)-negamycin.

A total synthesis of (+)-negamycin through isoxazolidine allylation

Bates, Roderick W.,Khanizeman, Rab'Iah Nisha,Hirao, Hajime,Tay, Yu Shan,Sae-Lao, Patcharaporn

, p. 4879 - 4884 (2014/07/07)

The β-amino acid antibiotic (+)-negamycin has been synthesised in ten steps from epichlorohydrin via Sakurai allylation of an isoxazolidine intermediate. The key allylation reaction proceeded with complete trans-selectivity, which is attributed to electrostatic attraction between the chlorine atom and the iminium ion in the Sakurai intermediate. This journal is the Partner Organisations 2014.

Asymmetric syntheses of (+)-negamycin, (+)-3-epi-negamycin and sperabillin C via lithium amide conjugate addition

Davies, Stephen G.,Ichihara, Osamu,Roberts, Paul M.,Thomson, James E.

, p. 216 - 227 (2011/03/17)

The chemo- and enantioselective reduction of ethyl 4-chloroacetoacetate and the diastereoselective conjugate addition of enantiopure lithium N-benzyl-N-(α-methylbenzyl)amide to an α,β-unsaturated ester have been used as the key steps in the total asymmetric syntheses of (+)-negamycin (in 13 steps and 24% overall yield), (+)-3-epi-negamycin (in 13 steps and 10% overall yield) and sperabillin C (in 17 steps and 13% overall yield) from commercially available starting materials.

Efficient total synthesis of (+)-negamycin, a potential chemotherapeutic agent for genetic diseases

Hayashi, Yoshio,Regnier, Thomas,Nishiguchi, Shigenobu,Sydnes, Magne O.,Hashimoto, Daisuke,Hasegawa, Junya,Katoh, Takahiro,Kajimoto, Tetsuya,Shiozuka, Masataka,Matsuda, Ryoichi,Node, Manabu,Kiso, Yoshiaki

supporting information; experimental part, p. 2379 - 2381 (2009/02/03)

Herein, we describe an efficient strategy for the total synthesis of (+)-negamycin using commercially available achiral N-Boc-2-aminoacetaldehyde as starting material with 42% overall yield for a limited number of steps. The Royal Society of Chemistry.

A simple and efficient approach to 1,3-aminoalcohols: application to the synthesis of (+)-negamycin

Naidu, S. Vasudeva,Kumar, Pradeep

, p. 3793 - 3796 (2008/02/06)

A short and practical enantioselective synthesis of (+)-negamycin has been achieved in high enantio- and diastereomeric excess using an iterative Jacobsen's hydrolytic kinetic resolution as the key step.

Administration of negamycin or deoxynegamycin for the treatment of bacterial infections

-

, (2008/06/13)

The invention provides a method for treating bacterial infections. In one aspect, the invention comprises orally administering a pharmaceutical composition to an animal, wherein the composition comprises a pharmaceutically acceptable excipient and an antibacterial effective amount of negamycin, or a pharmaceutically acceptable salt, prodrug or isomer thereof. An aspect of the invention also relates to a method of treating a bacterial infection, wherein the method comprises intravenously administering a pharmaceutical composition to an animal, and wherein the composition comprises a pharmaceutically acceptable excipient and an antibacterial effective amount of deoxynegamycin, or a pharmaceutically acceptable salt, prodrug or isomer thereof. An aspect of the invention also relates to a method of treating a bacterial infection, wherein the method comprises administering to an animal an antibacterial effective amount of negamycin or deoxynegamycin, or a pharmaceutically acceptable salt, prodrug or isomer thereof, and wherein the infecting bacteria are selected from a group of bacteria consisting of the following: Acinetobacter baumanii, Citrobacter freundii, Enterobacter aerogenes, haemophilus influenzae, Moraxella catarrhalis, Staphylococcus aureus MRSA, Staphylococcus aureus GISA, Staphylococcus epidermis, Streptococcus pneumoniae PenR, Streptococcus pneumoniae PenS and Streptococcus pyogenes.

N- and C-terminal modifications of negamycin

Raju,Mortell, Kathleen,Anandan, Sampathkumar,O'Dowd, Hardwin,Gao, Hongwu,Gomez, Marcela,Hackbarth, Corinne,Wu, Charlotte,Wang, Wen,Yuan, Zhengyu,White, Richard,Trias, Joaquim,Patel, Dinesh V.

, p. 2413 - 2418 (2007/10/03)

Negamycin 1 is a bactericidal antibiotic with activity against Gram-negative bacteria, and served as a template in an antibiotic discovery program. An orthogonally protected β-amino acid derivative 3a was synthesized and used in parallel synthesis of negamycin derivatives on solid support. This advanced intermediate was also used for N- and C-terminal modifications using solution-phase methodologies. The N-terminal modifications have resulted in the identification of active analogues, whereas the C-terminal modifications resulted in complete loss of antibacterial activity. The N-methyl negamycin analogue, 19a, inhibits protein synthesis (IC50=2.3 μM), has antibacterial activity (Escherichia coli, MIC=16 μg/mL), and is efficacious in an E. coli murine septicemia model (ED50=16.3 mg/kg).

Asymmetric synthesis of (+)-negamycin

Jain, Rajendra P.,Williams, Robert M.

, p. 6361 - 6365 (2007/10/03)

An asymmetric synthesis of the antibiotic (+)-negamycin (1) has been achieved, starting from commercially available (5R,6S)-4-(benzyloxycarbonyl)- 5,6-diphenyl-2,3,5,6-tetrahydro-4H-1,4-oxazin-2-one (2). The synthesis involved the stabilized Wittig olefination of the lactone carbonyl group of 2 and subsequent asymmetric hydrogenation to generate the corresponding all-syn oxazine 4 with excellent diastereoselectivity. Conversion of 4 into β-alkoxy imine 7 and subsequent CeCl3-promoted chelation-controlled allylation of 7 generated the corresponding homoallylamine 8 with good diatereoselectivity, which was readily converted into (+)-negamycin (1) in 25% overall yield over 11 steps.

Asymmetric synthesis of (+)-negamycin

Davies, Stephen G.,Ichihara, Osamu

, p. 1919 - 1922 (2007/10/03)

(+)-Negamycin was synthesised employing the highly diastereoselective conjugate addition of lithium (α-methylbenzyl)benzylamide in the key step. The synthesis was completed in 13 steps starting from ethyl 4-chloroacetoacetate with an overall yield of 24%.

Palladium(II)-Assisted Difunctionalization of Monoolefins: Total Synthesis of (+)-Negamycin and (-)-5-epi-Negamycin

Masters, John J.,Hegedus, Louis S.

, p. 4547 - 4554 (2007/10/02)

(+)-Negamycin and (-)-5-epi-negamycin were synthesized by a process involving the palladium(II)-assisted alkylation of an optically active ene carbamate followed by carbonylative coupling to a trialkylvinyltin.The synthesis of (+)-negamycin was completed in 15 steps with an overall yield of 13percent.The synthesis of (-)-5-epi-negamycin was completed in 12 steps with an overall yield of 20percent.In preparing these compounds, a highly diastereoselective reduction of an unsaturated ketone and an efficient intramolecular Mitsunobu reaction were also carried out.

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