The invention discloses a tofacitinib citrate crystal form compound as well as a preparation method and application thereof. An X-ray powder diffraction pattern shows that the crystal form has characteristic diffraction peaks at the places where the 2[theta] degree values are as follows: 5.9 degrees, 9.0 degrees, 11.2 degrees, 11.7 degrees, 13.8 degrees, 14.1 degrees, 14.9 degrees, 15.3 degrees, 16.2 degrees, 16.4 degrees, 17.5 degrees, 17.6 degrees, 18.8 degrees, 18.9 degrees, 20.4 degrees, 20.7 degrees, 21.3 degrees, 21.6 degrees, 22.1 degrees, 22.2 degrees, 22.4 degrees, 23.2 degrees, 25.2degrees, 25.6 degrees, 26.3 degrees, 27.1 degrees, 27.3 degrees, 27.7 degrees, 28.2 degrees, 28.8 degrees, 29.4 degrees, 30.2 degrees, 30.3 degrees, 31.3 degrees, 33.0 degrees, 33.7 degrees, 34.6 degrees, 35.4 degrees, 36.1 degrees, 36.7 degrees, 37.9 degrees, 38.6 degrees, 39.2 degrees, 41.2 degrees, 41.6 degrees and 45.2 degrees +/-0.2 degrees, the characteristic diffraction peaks are differentfrom main peaks and peak intensity in the prior art, and the DSC conversion temperature is 213 +/-2 DEG C. The tofacitinib citrate crystal form compound provided by the invention has better water solubility and higher stability, the preparation method is simple and easy to operate, and the medication safety is greatly improved after the tofacitinib citrate crystal form compound is used to preparea pharmaceutical composition.