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1-[(2R,4S,5S)-4-azido-5-(hydroxymethyl)oxolan-2-yl]-5-methyl-pyrimidine-2,4-dione

Base Information Edit
  • Chemical Name:1-[(2R,4S,5S)-4-azido-5-(hydroxymethyl)oxolan-2-yl]-5-methyl-pyrimidine-2,4-dione
  • CAS No.:30516-87-1
  • Molecular Formula:C10H13N5O4
  • Molecular Weight:267.244
  • Hs Code.:29349990
  • NSC Number:602670
  • ChEMBL ID:CHEMBL178240
  • Mol file:30516-87-1.mol
1-[(2R,4S,5S)-4-azido-5-(hydroxymethyl)oxolan-2-yl]-5-methyl-pyrimidine-2,4-dione

Synonyms:NSC602670;3'-Azidothymidine;1-[(2R,4S,5S)-4-azido-5-(hydroxymethyl)oxolan-2-yl]-5-methyl-pyrimidine-2,4-dione;Timazid;399024-19-2;Zidovudine, AZT;1-[(2R,4R,5S)-4-AZIDO-5-(HYDROXYMETHYL)OXOLAN-2-YL]-5-METHYL-PYRIMIDINE-2,4-DIONE;Thymidine, 8CI,;Trizivir (Salt/Mix);CHEMBL178240;SCHEMBL13609910;component of Combivir (Salt/Mix);HBOMLICNUCNMMY-UHFFFAOYSA-N;HMS3369K15;HMS3656A20;BCP03622;3'-Azido-3'-deoxythymidine, 98%;HB4602;STL451000;STL454167;ZINC04164448;AKOS015949577;AKOS037482514;CCG-229922;NCGC00015044-03;NCGC00015044-04;NCGC00015044-05;NCGC00094963-01;NCGC00094963-02;NCI60_004566;FT-0601543;EN300-295526;1-(3-azido-2,3-dideoxypentofuranosyl)-2-hydroxy-5-methylpyrimidin-4(1H)-one;1-(3-azido-2,3-dideoxypentofuranosyl)-4-hydroxy-5-methylpyrimidin-2(1H)-one;1-[4-azido-5-(hydroxymethyl)oxolan-2-yl]-5-methyl-1,2,3,4-tetrahydropyrimidine-2,4-dione

Suppliers and Price of 1-[(2R,4S,5S)-4-azido-5-(hydroxymethyl)oxolan-2-yl]-5-methyl-pyrimidine-2,4-dione
Supply Marketing:Edit
Business phase:
The product has achieved commercial mass production*data from LookChem market partment
Manufacturers and distributors:
  • Manufacture/Brand
  • Chemicals and raw materials
  • Packaging
  • price
  • Usbiological
  • Azidothymidine
  • 100mg
  • $ 134.00
  • TRC
  • 3''-Azido-3''-deoxythymidine
  • 250mg
  • $ 100.00
  • TRC
  • 3''-Azido-3''-deoxythymidine
  • 100mg
  • $ 75.00
  • Tocris
  • Azidothymidine ≥99%(HPLC)
  • 50
  • $ 61.00
  • TCI Chemical
  • 3'-Azido-3'-deoxythymidine >98.0%(T)
  • 5g
  • $ 127.00
  • TCI Chemical
  • 3'-Azido-3'-deoxythymidine >98.0%(T)
  • 1g
  • $ 44.00
  • Synthonix
  • 3'-Azido-3'-deoxythymidine (AZT) 98%+
  • 250g
  • $ 260.00
  • Synthonix
  • 3'-Azido-3'-deoxythymidine (AZT) 98%+
  • 100g
  • $ 130.00
  • Synthonix
  • 3'-Azido-3'-deoxythymidine (AZT) 98%+
  • 10g
  • $ 25.00
  • Synthonix
  • 3'-Azido-3'-deoxythymidine (AZT) 98%+
  • 25g
  • $ 40.00
Total 244 raw suppliers
Chemical Property of 1-[(2R,4S,5S)-4-azido-5-(hydroxymethyl)oxolan-2-yl]-5-methyl-pyrimidine-2,4-dione Edit
Chemical Property:
  • Appearance/Colour:Off -white crystalline powder 
  • Melting Point:106-112 °C 
  • Refractive Index:47 ° (C=1, H2O) 
  • Boiling Point:410.43°C (rough estimate) 
  • PKA:pKa 9.53(H2O t = 25.0±0.1 I = 0.00) (Uncertain) 
  • Flash Point:9℃ 
  • PSA:134.07000 
  • Density:1.3382 (rough estimate) 
  • LogP:-0.74354 
  • Storage Temp.:−20°C 
  • Sensitive.:Light Sensitive & Hygroscopic 
  • Solubility.:H2O: 50 mg/mL 
  • Water Solubility.:1-5 g/100 mL at 17 ºC 
  • XLogP3:0
  • Hydrogen Bond Donor Count:2
  • Hydrogen Bond Acceptor Count:6
  • Rotatable Bond Count:3
  • Exact Mass:267.09675391
  • Heavy Atom Count:19
  • Complexity:484
Purity/Quality:

99%, *data from raw suppliers

Azidothymidine *data from reagent suppliers

Safty Information:
  • Pictogram(s): HarmfulXn 
  • Hazard Codes:Xn 
  • Statements: 40-36/37/38-20/21/22 
  • Safety Statements: 36/37/39-45-36-26 
MSDS Files:

SDS file from LookChem

Total 1 MSDS from other Authors

Useful:
  • Canonical SMILES:CC1=CN(C(=O)NC1=O)C2CC(C(O2)CO)N=[N+]=[N-]
  • General Description Zidovudine (AZT) is a nucleoside reverse transcriptase inhibitor (NRTI) used in the treatment of HIV-1 infection, functioning by terminating viral DNA chain elongation. Research has explored its potential in overcoming drug resistance through bisphosphonate-based inhibitors that block ATP-mediated excision of AZT from DNA primers, as well as its repurposing as an anticancer agent via phosphonate prodrugs designed to enhance cytotoxicity and bioavailability. While modifications like triazole derivatives have been investigated to mimic AZT's mechanism, these have not demonstrated significant antiviral activity, underscoring AZT's unique role as a foundational antiretroviral therapy.
Technology Process of 1-[(2R,4S,5S)-4-azido-5-(hydroxymethyl)oxolan-2-yl]-5-methyl-pyrimidine-2,4-dione

There total 169 articles about 1-[(2R,4S,5S)-4-azido-5-(hydroxymethyl)oxolan-2-yl]-5-methyl-pyrimidine-2,4-dione which guide to synthetic route it. The literature collected by LookChem mainly comes from the sharing of users and the free literature resources found by Internet computing technology. We keep the original model of the professional version of literature to make it easier and faster for users to retrieve and use. At the same time, we analyze and calculate the most feasible synthesis route with the highest yield for your reference as below:

synthetic route:
Guidance literature:
With silica gel; trifluoroacetic acid; In methanol; chloroform;
DOI:10.1016/S0040-4039(01)01645-8
Guidance literature:
With sodium methylate; In methanol; for 24h; Ambient temperature;
DOI:10.1007/BF02494517
Guidance literature:
With sodium methylate; In methanol; at 20 ℃; for 1h;
Refernces Edit

Bisphosphonate inhibitors of ATP-mediated HIV-1 reverse transcriptase catalyzed excision of chain-terminating 3′-azido, 3′-deoxythymidine: A QSAR investigation

10.1016/j.bmc.2008.08.047

The research investigates the inhibition of ATP-mediated HIV-1 reverse transcriptase (RT) catalyzed excision of chain-terminating 3'-azido, 3'-deoxythymidine (AZT) from AZT-terminated DNA primers by a series of 42 bisphosphonates. The purpose of the study was to identify potent bisphosphonate-based inhibitors with low cellular toxicity that could restore AZT sensitivity in HIV-1 strains that have developed resistance. The researchers found that the most active compounds had IC50 values <1 μM in excision inhibition assays and were halogen-substituted phenyl or biphenyl sidechains. They utilized quantitative structure–activity relationship (QSAR) methods, including comparative molecular similarity analysis, to develop a classification model with 94% accuracy and a regression model that closely matched experimental data. The study concluded that it might be possible to develop bisphosphonate-based AZT-excision inhibitors with minimal cellular toxicity, offering a new approach to combat resistant HIV-1 strains. The chemicals used in the process included various bisphosphonates, AZT, ATP, and other reagents for the synthesis and biological activity testing of the compounds.

Synthesis and anticancer activity of 5'-chloromethylphosphonates of 3'-azido-3'-deoxythymidine (AZT)

10.1016/j.bmc.2011.08.069

The research aimed to develop novel phosphonate prodrugs of AZT with potential anticancer properties. The study synthesized a series of N-alkyl 5-chloromethylphosphonates of 3-azido-3-deoxythymidine (AZT) using P-chloromethylphosphonic ditriazolide as the phosphonylating agent. These compounds were evaluated for cytotoxic activity in two human cancer cell lines: oral (KB) and breast (MCF-7). The most active compound, phosphonamidate 8 with an N-n-propyl substituent, showed moderate cytotoxicity (IC50 values of 5.8 μg/mL in KB cells and 3.7 μg/mL in MCF-7 cells), though it was less potent than the parent AZT. Hydrolysis studies indicated that these phosphonamidates likely act as prodrugs of AZT, releasing the active nucleoside upon hydrolysis. Transport measurements using Caco-2 cell monolayers showed that the most active compounds (8 and 10) could permeate the intestinal epithelium, suggesting moderate oral bioavailability. The study concluded that these phosphonamidates could serve as promising prodrugs for AZT, potentially enhancing its anticancer activity and delivery.

Synthesis and anti-human immunodeficiency virus (HIV-1) activity of 3'-deoxy-3'-(triazol-1-yl)thymidines and 2',3'-dideoxy-3'-(triazol-1-yl)uridines, and inhibition of reverse transcriptase by their 5'-triphosphates

10.1248/cpb.38.2597

The research focuses on the synthesis and evaluation of the anti-human Immunodeficiency Virus (HIV-1) activity of 3'-deoxy-3'-(triazol-1-yl)thymidines and 2',3'-dideoxy-3'-(triazol-1-yl)uridines, as well as the inhibition of reverse transcriptase by their 5'-triphosphates. The researchers hypothesized that the triazole nitrogen atoms could mimic the distorted azido group found in effective HIV inhibitors like AZT. They synthesized these compounds using cyclization of 5'-trityl derivatives of AZT and CS-87 with a-ketophosphorus ylides and acetylenic compounds, followed by deprotection of the 5'-trityl group. Key chemicals involved in the research include 3'-azido-3'-deoxythymidine (AZT), 3'-azido-2',3'-dideoxyuridine (CS-87), 1,2,3-triazole derivatives, and various reagents such as methyl propiolate and dimethyl acetylenedicarboxylate (DMAD). However, despite the successful synthesis of these compounds, no significant activity against HIV-1 was observed, and their 5'-triphosphates showed no appreciable inhibitory activity against reverse transcriptase enzymes from HIV-1 and Rauscher murine leukemia virus (RLV).

Synthesis and Antiviral Activity of Several 2,5'-Anhydro Analogues of 3'-Azido-3'-deoxythymidine, 3'-Azido-2',3'-dideoxyuridine, 3'-Azido-2',3'-dideoxy-5-halouridines, and 3-Deoxythymidine against Human Immunodeficiency Virus and Rauscher-Murine Leukemia

10.1021/jm00128a034

The first article details the synthesis and evaluation of several 2,5’-anhydro analogues of known antiviral compounds for their potential activity against HIV and Rauscher-Murine leukemia virus (R-MuLV). The study found that while the parent compounds like AZT were more active against HIV-1, the 2,5’-anhydro analogues demonstrated significant antiviral activity with reduced cytotoxicity. Notably, the 2,5’-anhydro derivative of AZT (compound 13) had a considerably lower cytotoxicity (TCID50 >100 μM) compared to AZT (TCID50 29 μM). The second article explores the quantitative structure-activity relationships (QSAR) of 68 5-(substituted benzyl)-2,4-diaminopyrimidines on dihydrofolate reductase (DHFR) from Lactobacillus casei and chicken liver. The study aims to design new trimethoprim-type antifolates with higher selectivity for bacterial DHFR. The QSAR analysis aligns well with stereographic models of the enzyme's active sites, and the findings are used to discuss the broader challenge of developing selective inhibitors for drug design.

A Novel One-step Procedure for the Conversion of Thymidine into 2,3'-Anhydrothymidine

10.1039/c39890000997

T. Sudhakar Rao and Colin B. Reese describe a new method for synthesizing 2,3'-anhydrothymidine (3), a key intermediate in the production of the antiretroviral drug 3'-azido-3'-deoxythymidine (AZT). The authors discovered that heating thymidine (2) with an excess of diphenyl sulphite in dimethylacetamide solution in the presence of a catalytic amount of 1-methylimidazole at 156°C for 45 minutes yields 2,3'-anhydrothymidine (3) in approximately 65% yield. This method is advantageous over previous procedures, such as the use of 2-chloro-1-diethylamino-1,1,2-trifluoroethane, due to the greater accessibility of diphenyl sulphite. The synthesized 2,3'-anhydrothymidine (3) can then be converted into AZT by reacting with lithium azide, achieving a 71% yield of AZT. This streamlined synthesis offers a more efficient route for the production of AZT, which is crucial for the treatment of AIDS patients.

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