1542574-89-9

Basic information

• Product Name: O^5'-(4,4’-dimethoxytrityl)-N²-(dimethylformamidine)-2-aminothieno[3,4-d]pyrimidine
• Synonyms: O^5'-(4,4’-dimethoxytrityl)-N²-(dimethylformamidine)-2-aminothieno[3,4-d]pyrimidine
• CAS NO: 1542574-89-9
• Molecular Weight: 640.76
• Mol File: 1542574-89-9.mol
• Article Data: 2

Chemical Properties

• CAS DataBase Reference: O^5'-(4,4’-dimethoxytrityl)-N²-(dimethylformamidine)-2-aminothieno[3,4-d]pyrimidine(CAS DataBase Reference)
• NIST Chemistry Reference: O^5'-(4,4’-dimethoxytrityl)-N²-(dimethylformamidine)-2-aminothieno[3,4-d]pyrimidine(1542574-89-9)
• EPA Substance Registry System: O^5'-(4,4’-dimethoxytrityl)-N²-(dimethylformamidine)-2-aminothieno[3,4-d]pyrimidine(1542574-89-9)

Safety Data

• Hazardous Substances Data: 1542574-89-9(Hazardous Substances Data)

Upstream product

• 40615-36-9 4,4'-dimethoxytrityl chloride 
• 1542574-87-7 N²-DMF-2-aminothieno[3,4-d]pyrimidine G mimic deoxynucleoside 
• 125016-87-7 bis(4-methoxyphenyl)phenylmethyl methyl ether 

Downstream Products

• 1542574-90-2 (3'-(2-cyanoethyldiisopropyl)phosphoramidite)-O^5'-dimethoxytrityl-N²-DMF-2-aminothieno[3,4-d]pyrimidine G mimic deoxynucleoside 

Relevant articles and documents

Conquering 2-aminopurines deficiencies: Highly emissive isomorphic guanosine surrogate faithfully monitors guanosine conformation and dynamics in DNA

The archetypical fluorescent nucleoside analog, 2-aminopurine (2Ap), has been used in countless assays, though it suffers from very low quantum yield, especially when included in double strands, and from the fact that its residual emission frequently does not represent biologically relevant conformations. To conquer 2Aps deficiencies, deoxythienoguanosine (dthG) was recently developed. Here, steady-state and time-resolved fluorescence spectroscopy was used to compare the ability of 2Ap and dthG, to substitute and provide relevant structural and dynamical information on a key G residue in the (-) DNA copy of the HIV-1 primer binding site, (-)PBS, both in its stem loop conformation and in the corresponding (-)/(+)PBS duplex. In contrast to 2Ap, this fluorescent nucleoside when included in (-)PBS or (-)/(+)PBS duplex fully preserves their stability and exhibits a respectable quantum yield and a simple fluorescence decay, with marginal amounts of dark species. In further contrast to 2Ap, the fluorescently detected dthG species reflect the predominantly populated G conformers, which allows exploring their relevant dynamics. Being able to perfectly substitute G residues, dthG will transform nucleic acid biophysics by allowing, for the first time, to selectively and faithfully monitor the conformations and dynamics of a given G residue in a DNA sequence.