196872-67-0

Upstream product

• 4330-21-6 2-deoxy-3,5-di-O-p-toluoyl-α-D-erythro-pentofuranosyl chloride 
• 3601-89-6 Hoffer's chlorosugar 
• 196872-60-3 4H-2,4,5,14-Tetraaza-pentaphene-1,3-dione 
• 613-13-8 2-aminoanthracene 

Downstream Products

• 196872-77-2 4-{(2R,4S,5R)-5-[Bis-(4-methoxy-phenyl)-phenyl-methoxymethyl]-4-hydroxy-tetrahydro-furan-2-yl}-4H-2,4,5,14-tetraaza-pentaphene-1,3-dione 

Relevant academic research and scientific papers

Pteridine nucleosides - New versatile building blocks in oligonucleotide synthesis

Chemical syntheses of 1-(2-deoxy-β-D-ribofuranosyl)lumazines and isoptefins as well as 8-(2-deoxy-β-D-ribofuranosyl)-4-amino-7(8H)pteridones and -isoxantho-pterins have been developed to make the structural analogs of the naturally occurring 2'-deoxyribonucleosides in the pteridine series available. The corresponding phosphoramidites have been used in machine- aided solid-support syntheses leading to new types of fluorescence labeled oligonucleotides. The effects of the various fluorophors on duplex formation and as labels for enzyme reactions is demonstrated.

Nucleotides. Part LIV. Synthesis of condensed N1-(2'-deoxy-β-D- ribofuranosyl)lumazines, new fluorescent building blocks in oligonucleotide synthesis

Various condensed areno[g]lumazine derivatives 2, 3, and 5-7 were synthesized as new fluorescent aglycones for glycosylation reactions with 2- deoxy-3,5-di-O-(p-toluoyl)-α/β-D-erythro-pentofuranosyl chloride (10) to form, in a Hilbert-Johnson-Birkofer reaction, the corresponding N1-(2'- deoxyribonucleosides) 15-21. The β-D-anomers 15, 17, 19, and 21 were deblocked to 24-27 and, together with N1-(2'-deoxy-β-D- ribofuranosyl)lumazine (22) and its 6,7-diphenyl derivative 23, dimethoxytritylated in 5'-position to 28-33. These intermediates were then converted into the 3'-(2-cyanoethyl diisopropylphosphoramidites) 34-39 which function as monomeric building block in oligonucleotide syntheses as well as into the 3'-(hydrogen succinates) 40-45 which can be used for coupling with the solid-support material. A series of lumazine-modified oligonucleotides were synthesized and the influence of the new nucleobases on the stability of duplex formation studied by measuring the T(m) values in comparison to model sequences. A substantial increase in the T(m) is observed on introduction of areno[g]lumazine moieties in the oligonucleotide chain stabilizing obviously the helical structures by improved stacking effects. Stabilization is strongly dependent on the site of the modified nucleobase in the chain.