Angewandte
Chemie
DOI: 10.1002/anie.201201445
Biosynthetic Pathway
A Sweet Origin for the Key Congocidine Precursor 4-
Acetamidopyrrole-2-carboxylate**
Sylvie Lautru,* Lijiang Song, Luc Demange, Thomas Lombꢀs, Hervꢁ Galons,
Gregory L. Challis, and Jean-Luc Pernodet
Pyrrole groups are found in nature in two primary metabolites
(heme and tryptophan) and in a large variety of secondary
metabolites (e.g. pyoluteorin, clorobiocin, congocidine, and
prodigiosins). The diversity of these metabolites is mirrored
in the multiple biosynthetic pathways leading to pyrrole
groups. Six different biosynthetic pathways have been char-
acterized to date,[1,2] involving various primary metabolite
precursors, such as amino acids (glycine, proline, serine,
threonine, and tryptophan),[1–10] dicarboxylic acids (malonate,
oxaloacetate, and succinate),[1,2,7,8] or N-(5’-phosphoribosyl)-
anthranilate.[1]
Pyrrolamides are a family of natural products, synthesized
by Streptomyces and related actinobacteria, that all contain
one or more pyrrole-2-carboxamide moieties in their struc-
ture. Most pyrrolamides, such as the well-characterized
congocidine (1, also called netropsin; Figure 1) and distamy-
cin, bind noncovalently in the DNA minor groove with some
sequence specificity,[11] but pyrronamycin B has been sug-
gested to bind DNA covalently.[12] This capacity to bind DNA
confers on them a variety of biological activities, such as
antiviral, antibacterial, antitumor, and anthelmintic activities,
but also renders them too toxic for clinical use. Nonetheless,
because molecules binding to DNA at specific positions can
manipulate the expression of genes involved in various
diseases (such as cancer), congocidine and distamycin have
prompted the synthesis of many structurally related mole-
cules that bind in the minor groove of DNA at various defined
sequences.[13]
The nature and biosynthetic origin of the pyrrolamide
pyrrole precursor are unknown. A retrobiosynthetic analysis
of pyrrolamide structures suggests 4-aminopyrrole-2-carbox-
ylate as the potential pyrrole precursor common to all
pyrrolamides. However, this remains to be established and
no biosynthetic pathway has been reported for the synthesis
of this molecule. We report herein that 4-acetamidopyrrole-2-
carboxylate (10) is the true precursor of congocidine and
propose for this compound a biosynthetic pathway starting
from N-acetylglucosamine-1-phosphate (2), involving carbo-
hydrate metabolizing enzymes, and differing entirely from
known pyrrole biosynthetic pathways.
We recently reported the identification, analysis, and
heterologous expression of the first pyrrolamide gene cluster;
the cgc gene cluster directs congocidine biosynthesis in
Streptomyces ambofaciens.[14] Sequence analyses of the pro-
teins encoded by the cgc cluster led us to propose a pathway
for congocidine biosynthesis involving a noncanonical non-
ribosomal peptide synthetase (NRPS) and three putative
precursors: guanidinoacetate, 3-aminopropionamidine, and 4-
aminopyrrole-2-carboxylate. However, the biosynthetic ori-
gins of these precursors could not easily be inferred from the
analysis of the cgc gene cluster. In particular, we could not
identify any gene encoding homologues of known pyrrole
biosynthetic enzymes, suggesting that the pyrrole groups in
pyrrolamides could be synthesized through an entirely new
pathway.
[*] Dr. S. Lautru, Dr. J.-L. Pernodet
Institut de Gꢀnꢀtique et Microbiologie
Universitꢀ Paris-Sud, CNRS, UMR8621, 91405 Orsay (France)
E-mail: sylvie.lautru@igmors.u-psud.fr
Dr. L. Song, Prof. G. L. Challis
Department of Chemistry, University of Warwick,
Coventry CV4 7AL (UK)
Dr. L. Demange, Prof. H. Galons
Laboratoire de Chimie et Biochimie Pharmacologiques et Toxico-
logiques UMR 8601 CNRS
Universitꢀ Paris Descartes, Sorbonne Paris Citꢀ, UFR Biomꢀdicale
des Saints Pꢁres
45 rue des Saints Pꢁres, 75006 Paris (France)
The cgc18 gene encodes an NRPS module that has been
proposed to recognize 4-aminopyrrole-2-carboxylate and
catalyze its ATP-dependent activation as the corresponding
peptidyl carrier protein (PCP)-bound thioester.[14] To inves-
tigate whether 4-aminopyrrole-2-carboxylate is indeed a pre-
cursor of congocidine, we used HPLC to compare the profile
of metabolites in the culture supernatants of the “wild type”
SPM110 Streptomyces ambofaciens strain and the CGCA004
mutant strain, in which cgc18 has been disrupted.[14] A new
compound accumulated in the culture supernatant of
CGCA004 (retention time = 12.3 min, Figure 2a), which we
expected to be 4-aminopyrrole-2-carboxylate. This metabo-
lite peak was not detected in the CGCA004 chromatogram of
our previous report[14] and on average, it was detected in
approximately half of the cultures of strains deleted in cgc
T. Lombꢁs
UMR 8638 CNRS-Paris Descartes, Facultꢀ des Sciences Pharma-
ceutiques et Biologiques
4 av. de l’Observatoire, 75006 Paris (France)
[**] We would like to thank Dr. Christophe Corre for helpful discussions,
Dr. Laurent Micouin for his help with the synthesis of the 4-
acetamidopyrrole-2-methanol, and Dr. Cyrille Kouklovsky, Gꢀraldine
Le Goff, and Dr. Robert Thaꢂ for their help with mass spectrometry.
This work was supported in part by the European Union through the
Integrated Project ActinoGEN (CT-2004-0005224) and the reinte-
gration grant BOPA (CT-2005-029154), by the Pꢃle de Recherche et
d’Enseignement Supꢀrieur UniverSud Paris and by the Bettencourt
Schueller Foundation.
Supporting information for this article (experimental details) is
Angew. Chem. Int. Ed. 2012, 51, 1 – 6
ꢀ 2012 Wiley-VCH Verlag GmbH & Co. KGaA, Weinheim
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