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New Journal of Chemistry
Page 9 of 11
DOI: 10.1039/C5NJ03393D
NJC
ARTICLE
3
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DMEM medium for 24 h. The cell samples were collected in 1.5 mL
Eppendorf tube, spinned down, resuspended with 0.5 mL PBS in 1.5
mL Eppendorf tubes, and 55 μL of lysis buffer (40 mL of 0.5 M EDTA,
5 mL of 1 M Tris-HCl buffer, pH = 8.0, 5 mL of 100% Triton X-100,
and 50 mL water) was added for 20 min on ice (4 °C). The cell
samples in the Eppendorf tubes were centrifuged for 30 min, the
cells were transferred to new 1.5 mL Eppendorf tubes, the
supernatant liquid was extracted with
phenol:chloroform (gentle agitation for
a
1:1 mixture of
min followed by
5
4
centrifugation), and precipitated in two equivalent of cold ethanol
and one-tenth equivalent of sodium acetate. The contents in the
Eppendorf tubes were spinned down, decanted, and resuspended
the precipitates in 30 μL of deionized water-RNase solution (0.4 mL
water and 5 μL RNase) and 5 μL of loading buffer for 30 min at 37
°C. DNA ladder (marker) (2 μL) was inserted on the outer lanes and
1.2% gel was run at 5 V for 5 min before increasing to 100 V. After
the dye front reached 75% of the gel, the image of DNA shearing
illuminator was monitored at 312 nm using a UV lamp.
5
6
7
8
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Molecular docking study. Molecular docking studies of the
complexes 7 and 9 with DNA and HSA were performed using HEX
5.0 software and Q-site finder which is an interactive molecular
graphics program for the interaction, docking calculations, and to
identify possible binding site of the biomolecules. The coordinates
of metal complexes were taken from their optimized structure as a
.mol file and were converted to .pdb format using PYMOL software.
The crystal structure of B-DNA (PDB ID: 1BNA) and human serum
albumin (PDB ID: 1h9z) were retrieved from the protein data bank
has been performed using PYMOL Tool. Default parameters were
used for the docking calculations with correlation type shape and
FFT mode at 3D level, grid dimension of 6 with receptor range 180,
ligand range 180 with twist range 360, and distance range 40.
9
Acknowledgements
We thankfully acknowledge the financial support from the
Department of Science and Technology (DST) and the
Department of Biotechnology (DBT), Government of India. ESI-
MS and MALDI-MS were recorded in SAIF, Punjab University
1
and Jawaharlal Nehru University. The H and 13C NMR spectra
were recorded in SAIF, IIT-Madras. We thank the Pondicherry
Centre for Biological Sciences, Pondicherry, India, for their help
in carrying out the cell culture and fluorescence imaging
studies.
10 (a) T. Koullourou, L. S. Natrajan, H. Bhavsar, J. A. Simon, J. H.
Feng, J. Narvainen, R. Shaw, E. Scales, R. Kauppinen, A. M.
Kenwright and S. Faulkner, J. Am. Chem. Soc., 2008, 130, 2178-
2179; (b) G. Dehaen, S. V. Eliseeva, K. Kimpe, S. Laurent, L.
Vander Elst, R. N. Muller, W. Dehaen, K. Binnemans and T. N.
Parac-Vogt, Chem.-Eur. J., 2012, 18, 293-302; (c) E. Debroye, G.
Dehaen, S. V. Eliseeva, S. Laurent, L. Vander Elst, R. N. Muller, K.
Binnemans and T. N. Parac-Vogt, Dalton Trans., 2012, 41,
10549-10566.
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