The Journal of Organic Chemistry
Note
Surugamide D (4): pale yellow; [α]20 −2.2 (c 0.1, MeOH); UV
Et3N (200 μL) and stirred at rt for 1h. The product was diluted with
H2O and extracted with EtOAc. The EtOAc layer was dried, dissolved in
TFA (0.5 mL), and left at rt for 1 h. The solvent was removed to afford
L-Ile-L-Ile-OMe which was used without further purification. Boc-DL-Ile,
Boc-D-Leu, DL-Ile-L-Ile-OMe, L-Leu-L-Ile-OMe. L-Ile-DL-Ile-OMe, L-Val-
DL-Ile-OMe, and L-Val-L-Ile-OMe were prepared in the same manner.
LC−MS Analyses of DAA Derivatives of Dipeptide Methyl
Esters. A mixture of fragments c and d (Ile-Ile and Leu-Ile) was treated
with TMS diazomethane. The reaction mixture was dried under a stream
of N2 and converted to the DAA derivatives which were analyzed by
RP-HPLC (Cosmosil 2.5C18-MSII 2.0 mm × 100 mm) using a gradient
elution of 20 to 100% MeCN containing 0.5% AcOH. Retention times
for standard dipeptide methyl esters (min): L-Ile-D-Ile-OMe (25.6),
L-Ile-L-Ile-OMe (25.8), D-Ile-L-Ile-OMe (27.0), D-Leu-L-Ile-OMe
(27.2). Retention times of the derivative from partial hydrolysate of 1:
25.6, 27.2. Each partial hydrolysate of 2−5 was treated in the same
way. Each product was analyzed by RP-HPLC using a gradient elution
from H2O−75% MeCN containing 0.5% AcOH. Retention times of
standard dipeptide methyl esters (min): L-Val-L-Ile-OMe (33.5), L-Val-
D-Ile-OMe (35.3), L-Ile-D-Ile-OMe (37.0), L-Ile-L-Ile-OMe (37.4), D-Ile-
L-Ile-OMe (38.5), D-Leu-L-Ile-OMe (38.7). Retention times of the
pertinent derivatives from partial hydrolysates (min): 3, 37.1 and 38.7;
4, 35.4; 5, 37.0.
Cathepsin B Inhibitory Assay. Cathepsin B inhibitory assay was
performed according to a modification of the method of Hisawa et al.13
The enzyme (cathepsin B from bovine spleen, Sigma C6286) was
stocked at 1 unit/mL in 50 mM MES pH 6.0 and 0.1% Brij-35.The
enzyme solution was diluted by 100 times with the buffer before use.
The mixture of 4 μL test sample solution, 100 μL of the enzyme solution,
and 50 μL of 25 μM fluorescent substrate (Z-Arg-Arg-AMC, Peptide
Institute, Inc.) in DMSO was incubated at 37 °C for 30 min. The
fluorescence of the liberated AMC was measured with an excitation at
345 nm and emission at 440 nm. The experiments were conducted in
triplicate. IC50 values (μM) of 1, 2, 3, 4, 5, and E-64 (>98% pure, Peptide
Institute, Osaka) were as follows: 21 1, 27 2, 36 3, 18 1, 16 2,
and 0.014 0.002, respectively.
D
1
(MeOH) λmax (log ε) 208 (3.87); H NMR data (DMSO-d6), see
Table S2 in SI; 13C NMR data (DMSO-d6), see Table S2 in SI; HRMS
(ESI-TOF) m/z: [M + Na]+ Calcd for C47H79N9NaO8 920.5949; Found
920.5928, Δ −2.1 mmu.
Surugamide E (5): pale yellow; [α]20 +5.6 (c 0.1, MeOH); UV
D
1
(MeOH) λmax (log ε) 209 (3.92); H NMR data (DMSO-d6), see
Table S2 in SI; 13C NMR data (DMSO-d6), see Table S2 in SI; HRMS
(ESI-TOF) m/z: [M + Na]+ Calcd for C47H79N9NaO8 920.5949; Found
920.5923, Δ −2.6 mmu.
Total Hydrolysis and Derivatization with FDAA and GITC. A
portion of 1 (100 μg) was hydrolyzed in 6 N HCl at 110 °C overnight.
The solution was dried under a stream of N2 and dissolved in H2O
(100 μL). To a half portion of the solution were added 100 μL of 1%
FDAA in acetone and 20 μL of 1 M NaHCO3 and allowed to react at
50 °C for 30 min. The mixture was quenched with 10 μL of 2 N HCl.
To the other half was added 10 μL 6% triethylamine and 1% GITC in
acetone and allowed to react at rt for 10 min. The mixture was quenched
with 10 μL of 5% AcOH. Surugamides B−E (2−5) were also
hydrolyzed, and the hydrolysates were derivatized with FDAA in the
same manner.
LC−MS Analyses of the FDAA and GITC Derivatives of Amino
Acids. The DAA derivatives were analyzed by reversed-phase HPLC
(Cosmosil 2.5C18-MSII 2.0 mm× 100 mm) using a gradient elution of
10 to 50% MeCN containing 0.5% AcOH for 30 min. Retention times
for standard amino acids (min): L-Ala (10.5), D-Ala (12.4), L-Val (13.6),
D-Val (16.1), L-Ile (15.6), D-Ile (18.2), L-allo-Ile (15.6), D-allo-Ile (18.2),
L-Leu (16.1), D-Leu (18.5), L-Phe (16.1), D-Phe (18.1), L-Lys (17.2),
D-Lys (18.5). Retention times (Rt) for the acid hydrolysate of 1 (min):
12.4 (m/z 342, Ala), 15.6 (m/z 384, Ile), 17.1 (m/z 651, Lys), 18.0 (m/z
418, Phe), 18.2 (m/z 384, Ile), 18.4 (m/z 384, Leu); 2: 12.2 (m/z 342,
Ala), 15.6 (m/z 384, Ile), 16.1 (m/z 372, Val), 17.1 (m/z 651, Lys), 18.0
(m/z 418, Phe), 18.3 (m/z 384, Leu); 3: 12.2 (m/z 342, Ala), 13.6 (m/z
372, Val), 15.5 (m/z 384, Ile), 17.1 (m/z 651, Lys), 18.0 (m/z 418, Phe),
18.1 (m/z 384, Ile), 18.3 (m/z 384, Leu); 4: 12.2 (m/z 342, Ala), 13.5
(m/z 372, Val), 15.5 (m/z 384, Ile), 17.0 (m/z 651, Lys), 18.0 (m/z 418,
Phe), 18.1 (m/z 384, Ile), 18.3 (m/z 384, Leu); 5: 12.2 (m/z 342, Ala),
13.6 (m/z 372, Val), 15.5 (m/z 384, Ile), 17.1 (m/z 651, Lys), 17.9 (m/z
418, Phe), 18.1 (m/z 384, Ile), 18.3 (m/z 384, Leu)
The GITC derivatives were analyzed by RP-HPLC (Cosmosil
2.5C18-MSII 2.0 mm × 100 mm) using a gradient elution of 21 to 26%
MeCN containing 0.5% AcOH for 120 min. Retention times for
standard amino acids (min): L-Ile (31.9), D-Ile (42.6), L-allo-Ile (30.7),
D-allo-Ile (42.3). Retention times of the pertinent derivatives from the
acid hydrolysate of 1 (min): 31.9 (L-Ile), 42.6 (D-Ile).
LC−MS-Guided Fractionation of the Partial Hydrolysate. An
aliquot of 1 (200 μg) was hydrolyzed in 4 N HCl at 100 °C for 4 h. The
dried hydrolysate was redissolved in 20 μL of MeOH. A 15 μL portion
was separated by RP-HPLC (Cosmosil 2.5C18-MSII 2.0 mm × 100 mm)
using a gradient elution from 0 to 35% MeCN containing 0.5% AcOH.
The eluate was split with a microsplitter bulb (GL Science) located
between the UV detector and the MS detector. One fifth of the eluate was
directed to ESIMS for the MS/MS analyses, and the remaining effluent
was collected every 12 s for 48 min into 96-well deep plates. After
the assignments of peptide sequences by extensive MS/MS analyses,
the fractions containing Ile-Ile-Lys, Lys-Ile-Phe, a mixture of Ile-Ile and
Leu-Ile, and linear octapeptides were identified.
ASSOCIATED CONTENT
* Supporting Information
■
S
NMR data for 1−5 and the results of Marfey analyses. This
material is available free of charge via the Internet at http://pubs.
AUTHOR INFORMATION
Corresponding Author
Fax: 81-3-5841-8166.
■
Author Contributions
§K.T. and A.N. contributed equally to this paper.
Notes
The authors declare no competing financial interest.
ACKNOWLEDGMENTS
■
This work was supported by Grant-in-Aid for Scientific Research
on Innovative Areas “Chemical Biology of Natural Products”
(23102007) from MEXT.
Marfey’s Analyses of Ile-Ile-Lys and Lys-Ile-Phe. A fraction
containing a peptide was hydrolyzed in 6 N HCl at 110 °C overnight.
The solution was dried, converted to the methyl ester DAA derivative,
and analyzed as described above. Retention times for standard amino
acids (min): L-Ile (15.7), D-Ile (18.2), L-Phe (16.1), D-Phe (18.1), L-Lys
(17.2), D-Lys (18.5). Retention times of the derivatives from the
hydrolysate (min): fragment a (Ile-Ile-Lys): 15.8 (m/z 384, Ile), 17.1
(m/z 651, Lys), 18.2 (m/z 384, Ile); fragment b (Lys-Ile-Phe): 15.6
(m/z 384, Ile), 17.1 (m/z 651, Lys), 18.0 (m/z 418, Phe).
Synthesis of Dipeptide Methylesters. L-Ile (50 mg) was
dissolved in 10% HCl−MeOH (1 mL) and heated at 100 °C for 2 h
to yield L-Ile-OMe which was dissolved in DMF (1 mL). To the solution
were added Boc-L-Ile (75 mg), WSCI (75 mg), HOBt (50 mg), and
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