V-Based, Extended Catalytic Lifetime Catechol Dioxygenases
A R T I C L E S
the expected (vide infra) increasing concentration vs time needed
to rationalize why the kinetic curves are linear: the rate-
increasing effect of increasing monomer concentration is
convoluted experimentally with the exponential rate decrease
due to the first-order loss of O2; the result is an apparently linear
kinetic curve (e.g., Figures 1, S3, and S4). Second, we generated
the predicted kinetic curves as a function of the initial [VO-
(DBSQ)(DTBC)]2 concentration, determined the initial rates
from those computed data, and then plotted those initial rates
vs the initial concentrations to be sure that the rate law
determined from the initial rates is consistent with the kinetic
model and rate constants in Scheme 2. The result, shown in
Figure S7 of the Supporting Information (which basically
mirrors Figure 2, vide supra), again shows that the kinetic model
in Scheme 2 is fully consistent with the measured rate law
obtained using initial rate methods.
line EPR spectrum to the asymmetric spectrum as shown in
Figure S8 along with a dramatic color change from blue to
violet. (A reviewer commented that oxo-transfer to DMSO could
be involved in this reaction; we agree, and thank the reviewer
for noting this possibility.) Additional evidence for a facile
dimer-to-monomer equilibrium is the following: (3) Pierpont’s
demonstration of a facile dimer-monomer equilibrium for
related Mo complexes;17 (4) literature structural studies showing
that vanadium compounds with coordination numbers of 5 or 6
are the most common so that only the monomer is expected to
react quickly with O2 (formally seven-coordinate compounds
typically contain a cyclic peroxo component occupying two
adjacent sites;18 we thank Prof. Cortland Pierpont at the
University of Colorado for this point); and (5) the mechanism
in which intact [VO(DBSQ)(DTBC)]2 persists inside the
catalytic cycle with, for example, only one vanadium being
active, Scheme S1 of the Supporting Information (i.e., similar
to enzymatic half-site reactivity19), cannot fit the observed
kinetic data (vide supra) and also seems sterically prohibitive
with no clear chemical advantage, at least not that we have been
able to discern.
In step 2, O2 binds to either the semiquinone20 or the more
nucleophilic catecholate ligand, as Bianchini16 and Pierpont
advocate,21 in the [VO(DBSQ)(DTBC)] monomer as an indi-
vidually fast but still rate-determining step in the catalytic cycle,
consistent with the experimental kinetics. Step 2 is fast but rate-
determining since the reverse of step 1 is faster than step 2
(which is also fairly fast). Note that the fact that step 2 is rate-
determining means that the species after this and until the
catalyst resting state do not build up to significant concentrations
and thus are not expected to be amenable to typical spectroscopic
characterization. This means that the species after step 2 in
Scheme 3 must rely on steps that have to be present in order to
account for the observed products plus literature precedent for
the details of those steps.
Noteworthy here is that the mechanism in Scheme 2 is a rare
(and possibly the first) experimental example of the generalized
kinetic scheme A h 2B, B + C f D + product, then 2D + 2E
f A. As such, it is of interest to study its general properties
further by numerical integration simulations as a function of
the concentrations of each variable and the four rate constants
involved. These simulations are being carried out as a separate
study.14
A Proposed Mechanism Consistent with the Kinetics, the
Catechol Dioxygense Literature, and Employing [VO(DB-
SQ)(DTBC)]2 as the Catalyst Resting State. A proposed
system for the active vanadium catechol dioxygenase mechanism
is provided in Scheme 3. This mechanism is of course consistent
with our kinetic studies, but then it also incorporates key features
from the literature of the Fe-based catechol dioxygenases,
notably the substrate activation mechanism proposed by Que
and co-workers,4 the M-OO-C(catechol) species characterized
by Bianchini and co-workers,16 as well as a common branching
intermediate for intradiol vs extradiol cleavage pathways as
detailed by Bugg and co-workers.5
(17) (a) A Mo analogue, [MoVIO(DTBC)2]2, dissociates into monomer in
coordinating solvent as demonstrated by NMR: Buchanan, R. M.; Pierpont,
C. G. Inorg. Chem. 1979, 18, 1616-1620. (b) The tetramer (chiral square)
[MoIV(µ-O)(3,6-DTBC)2]4 also dissociates into monomer upon ligand
addition: Liu, C.-M.; Nordlander, E.; Schmeh, D.; Shoemaker, R.; Pierpont,
C. G. Inorg. Chem. 2004, 43, 2114-2124.
(18) (a) Nugent, W. A.; Mayer, J. M. Metal-Ligand Multiple Bonds; John Wiley
& Sons: New York, 1988; pp 159-162. (b) The Cambridge Structural
Database (version 5.26 Nov 2004) via Conquest (version 1.7) software.
(19) Enzymic half-site reactivity is observed in proteins composed of n identical
subunits but which react with a substrate or an inhibitor with only n/2
subunits saturated with that ligand. Binding of the ligand to one site typically
induces a conformational change of the second binding site, thereby
rendering the second site inactive. (a) Levitzki, A.; Stallcup, W. B.;
Koshland, D. E., Jr. Biochemistry 1971, 10, 3371-3378. (b) Seydoux, F.;
Malhotra, O. P.; Bernhard, S. A. CRC Crit. ReV. Biochem. 1974, 2, 227-
257.
Based on our earlier finding and the kinetic studies herein,
Pierpont’s complex is unequivocally identified as the catalyst
resting state. In step 1 in Scheme 3, the [VO(DBSQ)(DTBC)]2
reversibly fragments in even weakly coordinating solvent to
form 2 equiv of monomer. Five lines of evidence support this
step: (1) the kinetic studies and MacKinetics curve-fitting; and
(2) an experiment in which even a drop of DMSO added to
[VO(DBSQ)(DTBC)]2 in toluene changes the signature nine-
(14) Morris, A. M.; Yin, C.-X.; Finke, R. G. Unpublished results and experiments
in progress.
(15) The terminal V-O oxo is represented in Scheme 3 as a VdO simply out
of convenience; it certainly has some triple bond character based on
Pierpont’s structural studies. More specifically, the V-O bonds in [VO-
(DBSQ)(DTBC)]2 (bond length 1.581(4) Å15a) looks like a triple bond15b,c
in comparison to the VdO bond length of 1.616(4) Å in the VO(catecho-
(20) The proposed C2 (instead of C1) site of attachment of O2 to the 3,5-di-
tert-butylsemiquinone ligand in [VO(DBSQ)(DTBC)]2 shown in Scheme
3 is consistent with the major product being 4,6-di-tert-butyl-2H-pyran-
2-one, rather than its isomer, 3,5-di-tert-butyl-2H-pyran-2-one. We note,
however, that both C1 and C2 binding of O2 can give the intradiol product,
2, a detail not included in Scheme 3 only to keep if from being too cluttered.
Of interest here is that computed net cationic charges at C1 (0.44) versus
C2 (0.42) have been reported for the cationic [CoIII(di-tert-butylcatecholato)-
(MeC(CH2PPh2)3)]+.20a (a) Bencini, A.; Bill, E.; Mariotti, F.; Totti, F.;
Scozzafava, A.; Vargas, A. Inorg. Chem. 2000, 39, 1418-1425. (b)
Mechanisms with O2 bound to the C2 site of DTBC are commonly proposed
in the literature: Cox, D. D.; Que, L., Jr. J. Am. Chem. Soc. 1988, 110,
8085-8092. (c) Viswanathan, R.; Palaniandavar, M. J. Chem. Soc., Dalton
Trans. 1995, 1259-1266. (d) Funabiki, T.; Yamazaki, T. J. Mol. Catal.
A: Chem. 1999, 150, 37-47. (e) Yamahara, R.; Ogo, S.; Watanabe, Y.;
Funabiki, T.; Jitsukawa, K.; Masuda, H.; Einaga, H. Inorg. Chim. Acta
2000, 300-302, 587-596.
2-
late)2 ion. However, competing π bonding from the good π donor
catecholate ligands is also present and needs to be a part of any discussion
of the best descriptions of the V-O bonds. Two of the V-O(catecholate)
bond lengths in [VO(DBSQ)(DTBC)]2 are quite short, 1.827(4) Å, in
comparison to V-O(semiquinone) bond length of 1.975-1.987 Å, showing
the variable interactions present between V and catecholate or semiquinone
oxygen atoms. (a) Cass, M. E.; Green, D. L.; Buchanan, R. M.; Pierpont,
C. G. J. Am. Chem. Soc. 1983, 105, 2680-2686. (b) We thank Professor
C. G. Pierpont for a discussion and his insights on this point. (c) Nugent,
W. A.; Mayer, J. M. Metal-Ligand Multiple Bonds; John Wiley & Sons:
New York, 1988; pp 33-36. (d) The classic Rappe´-Goddard importance
of a spectator oxo ligand also merits mention with respect to Scheme 3:
Rappe´, A. K.; Goddard, W. A., III. J. Am. Chem. Soc. 1982, 104, 3287-
3294.
(21) The mechanistic issues of the site and timing of the O2 plus bound
catecholate benefited from several discussions with Prof. C. Pierpont; it
is our pleasure to acknowledge and thank him for those insightful
discussions.
(16) Barbaro, P.; Bianchini, C.; Linn, K.; Mealli, C.; Meli, A.; Vizza, F. Inorg.
Chim. Acta 1992, 198-200, 31-56.
9
J. AM. CHEM. SOC. VOL. 127, NO. 40, 2005 13993