Putative Topoisomerase Inhibitors
J ournal of Medicinal Chemistry, 1997, Vol. 40, No. 13 2045
N-[2-(Dim eth yla m in o)eth yl]ben zoth ien o[3,2-b]qu in o-
lin e-4-ca r boxa m id e 10,10-d ioxid e (13): red needles (41%);
mp 248-255 °C (from EtOH); H NMR δ 7.82-7.91 (m, 2 H),
8.03 (t), 8.17 (d), 8.33 (d), 8.72 (d), 8.74 (d), 9.37 (s), 10.45 (br
s, NH). Anal. (C20H18N3O3S) C, H, N.
N-[2-(Dim eth yla m in o)eth yl]-11H-in d en o[1,2-b]qu in ox-
a lin e-6-ca r boxa m id e (16). 11-Oxo-11H-indeno[1,2-b]qui-
noxaline-6-carboxylic acid26 (0.2 g), ethylene glycol (40 mL),
KOH (0.88 g), and hydrazine hydrate (0.64 g) were heated at
140 °C with stirring for 2 h. The condenser was removed, and
the temperature was increased gradually to 180 °C over 1 h.
The condenser was replaced, and the solution was heated
under reflux for 4 h. Water (40 mL) was added to the cooled
solution, which was then taken to pH 2 with concentrated HCl.
The resulting precipitate was extracted into CHCl3, the
solution was dried (MgSO4), and the solvent was removed
under reduced pressure to give 11H-indeno[1,2-b]quinoxaline-
6-carboxylic acid (0.12 g, 63%), sufficiently pure for amidation.
A sample recrystallized from EtOH had mp >250 °C (slow
decomposition): 1H NMR δ 4.24 (s, 2 H, CH2), 7.56-7.70 (m,
2H), 7.78 (d) 7.90 (t) 8.14 (d), 8.29-8.33 (m, 2 H). This was
reacted by the standard method to give the amide 16 as yellow
needles (57%): mp 188-190 °C [from petroleum ether (bp 90-
110 °C)]; 1H NMR (CDCl3) δ 4.16 (s, 2 H, CH2), 7.53-7.58 (m,
2 H), 7.67 (d), 7.78 (t), 8.20 (d), 8.43 (d), 8.85 (d), 11.14 (s, NH).
Anal. (C20H20N4O) H, N; C: calcd, 72.3; found, 71.8.
N-[2-(Dim eth yla m in o)eth yl]-10H-qu in olin e-4-ca r box-
a m id e (7). 10H-Quinoline-4-carboxylic acid 38 (0.22 g) in
SOCl2 (3 mL) was heated at 80 °C for 1 h, and the excess
reagent was removed at 20 mmHg. The residue was washed
by decantation with dry CH2Cl2 (2 × 3 mL), and fresh CH2Cl2
(3 mL) was added. The mixture was cooled to 0 °C and stirred,
and N,N-dimethylethylene-1,2-diamine (0.10 g) was added.
After being stirred at room temperature for 1 h, the solution
was filtered, the filtrate was washed with 10% Na2CO3 solution
and water and dried (MgSO4), and the solvent was removed
to give 7 (0.17 g, 63%), mp 251-254 °C (from MeCN), which
could not be freed from a trace impurity: 1H NMR δ 7.06 (t),
7.20-7.32 (m, 2 H), 7.41 (t), 7.73 (d), 7.80 (s), 8.14(d), 8.64 (d),
9.72 (s, ring NH), 11.92 (br t, amide NH). A satisfactory
elemental analysis could not be obtained.
N-[2-(Dim eth yla m in o)eth yl]-8-ch lor oben zofu r o[2,3-b]-
qu in oxa lin e-10-ca r boxa m id e (15) a n d N-[2-(Dim eth yl-
a m in o)eth yl]-9-ch lor oben zofu r o[2,3-b]qu in oxa lin e-7-ca r -
boxa m id e (23). The precursor isomeric acid mixture17 was
reacted with SOCl2 and then N,N-dimethylethylene-1,2-di-
amine as for the preparation of 7. The crude product was first
washed through a short alumina column with CHCl3 and the
solvent removed to give the carboxamide mixture as a yellow
solid (56%). This (0.18 g) was recrystallized from MeCN to
give a sample of 23 (containing <10% 15 by NMR) (0.04 g):
mp 205-212 °C; 1H NMR (CDCl3) δ 7.54 (t), 7.70 (d), 7.75 (t),
8.24 (s), 8.34 (d), 8.80 (s), 10.82 (s, NH). The recrystallization
filtrate was evaporated to dryness, and the residue was stirred
with cold MeCN (2 × 2 mL) and filtered each time. Evapora-
tion of the solvent from the combined filtrates gave 15
(containing <5% 23 by NMR) (0.07 g): mp 128-133 °C; 1H
NMR (CDCl3) δ 7.53 (t), 7.69 (d), 7.77 (t), 8.32 (d), 8.37 (s),
8.80 (s), 10.19 (s, NH). Alkaline hydrolysis gave the corre-
sponding carboxylic acid. Anal. (on a sample of the isomeric
amide mixture, recrystallized from MeCN) (C19H17ClN4O2) H,
N; C: calcd, 61.9; found, 61.4.
In Vitr o Gr ow th Dela y Assa ys. Murine P388 leukemia
cells, Lewis lung carcinoma cells (LLTC), and human J urkat
leukemia cells (J LC), together with their amsacrine and
doxorubicin-resistant derivatives (J LA and J LD respectively),
were obtained and cultured as described.18,19 Growth inhibi-
tion assays were performed by culturing cells at 4.5 × 103
(P388), 103 (LLTC), and 3.75 × 103 (J urkat lines) per well in
microculture plates (150 mL/well) for 3 (P388) or 4 days in
the presence of drug. Cell growth was determined by [3H]TdR
uptake (P388)27 or the sulforhodamine assay.28 Independent
assays were performed in duplicate, and coefficients of varia-
tion were 12% (P388), 12% (LLTC), 6.3% (J LC), 9.3% (J LA),
and 5.7% (J LD).
1
N-[2-(Dim eth yla m in o)eth yl]-11-oxo-11H-in d en o[1,2-b]-
qu in oxa lin e-6-ca r boxa m id e (17): yellow needles (61%); mp
220-221 °C (from EtOH); 1H NMR δ 7.77 (t), 7.90-8.05 (m, 3
H), 8.27 (d), 8.34 (d), 8.64 (d), 10.55 (br s, NH). Anal.
(C20H18N4O2) C, H, N.
N-[2-(Dim et h yla m in o)et h yl]-6-oxo-6H -in d en o[2,1-b]-
qu in olin e-4-ca r boxa m id e (19): yellow needles (59%); mp
163-165 °C (from toluene); 1H NMR δ 7.46 (t), 7.62-7.74 (m,
3 H), 7.81 (d), 7.94 (d), 8.26 (s), 8.76 (d), 10.87 (br t, NH). Anal.
(C21H19N3O2) C, H, N.
N-[2-(Dim eth yla m in o)eth yl]ben zofu r o[2,3-b]qu in oxa -
lin e-7-ca r boxa m id e (22): pale tan solid (61%), after tritu-
ration with hexane, but which formed a sticky hydrate on
standing; 1H NMR (CDCl3) δ 7.45 (t), 7.57-7.68 (m, 2 H), 7.79
(t), 8.21 (d), 8.29 (d), 8.79 (d), 10.14 (s, NH). The compound
was >96% pure by HPLC, but a satisfactory elemental analysis
could not be obtained.
N-[2-(Dim eth yla m in o)eth yl]ben zoth ien o[3,2-b]qu in ox-
a lin e-10-ca r boxa m id e (18): pale yellow needles (66%); mp
208-210 °C (from MeCN); 1H NMR (CDCl3) δ 7.47 (t), 7.58
(t), 7.75 (d), 7.82 (t), 8.16 (d), 8.73 (d), 8.84 (d), 11.02 (s, NH).
Anal. (C19H18N4OS) C, H, N.
N-[2-(Dim eth yla m in o)eth yl]-6H-in d olo[2,3-b]qu in oxa -
lin e-4-ca r boxa m id e (20). 6H-Indolo[2,3-b]quinoxaline-4-car-
boxylic acid17 (50) was reacted with twice the molar ratio of
other reagents described in the general method above to give
the intermediate carbamate 51 as a tan solid (43%, >97% pure
by NMR): mp >128 °C (slow decomposition) after trituration
1
of the crude oil with hexane; H NMR (CDCl3) δ 1.12 (d, J )
6.7 Hz, 6 H, CH(CH3)2), 2.27 (m, 1 H, CH(CH3)2), 2.44 (s, 6 H,
N(CH3)2), 2.89 (t, J ) 6 Hz, 2 H, CH2N), 3.85 (q, J ) 6 Hz, 2
H, NHCH2), 4.41 (d, J ) 6.6 Hz, 2 H, OCH2), 7.53 (t), 7.72 (t),
7.84 (t), 8.19 (d), 8.34 (d), 8.40 (d), 8.87 (d), 11.17 (br s, 1 H,
NH).
A solution of aqueous NaOH (6 mL, 0.25 M) was added with
stirring to a solution of 51 (0.1 g) in dioxane (20 mL), causing
the solution to turn deep red. Stirring was continued for a
further 16 h, when the solution was neutralized with HCl and
the mixture was concentrated under reduced pressure to 5 mL.
This was extracted with CH2Cl2 (3 × 10 mL), the combined
extracts were dried (MgSO4), and the solvent was removed to
give 20 as a viscous yellow semisolid (0.06 g, 76%, >95% pure
by NMR): 1H NMR (CDCl3) δ 7.05 (t), 7.21 (t), 7.29 (d), 7.54
(t), 7.91 (d), 7.94 (d), 8.02 (d), 11.13 (s, NH), 12.50 (s, NH).
Attempts to purify this material for microanalysis were not
satisfactory, and various salts were very hygroscopic.
N-[2-(Dim eth yla m in o)eth yl]-6H-3-ch lor oin d olo[2,3-b]-
qu in oxa lin e-1-ca r boxa m id e (14) a n d N-[2-(Dim eth yla m i-
n o)eth yl]-6H-2-ch lor oin d olo[2,3-b]qu in oxa lin e-4-ca r box-
a m id e (21). An isomeric mixture of precursor acids17 was
reacted as for 20 to give the intermediate carbamate mixture
as a pale yellow solid (40%) after trituration of the crude oil
with hexane. This mixture was hydrolyzed as for 20. In this
case, all solvents were removed from the neutralized reaction
mixture, water was added, and the crude mixture of carbox-
amide isomers was separated as an orange solid. This (0.1 g)
was stirred with ice-cold CHCl3 (1 mL) and filtered. Evapora-
tion of the filtrate gave a sample of 14 (free of 21) (0.03 g):
mp 218-220 °C; 1H NMR (CDCl3) δ 7.29 (d), 7.31 (t), 7.62 (t),
7.94 (s), 7.95 (s), 8.08 (d), 11.10 (s, NH), 12.48 (s, NH).
Alkaline hydrolysis gave the corresponding carboxylic acid.
The solid from the first filtration was stirred with CHCl3 (3 ×
1 mL) and filtered each time, and the final insoluble solid was
a sample of 20 (free of 14) (0.028 g): mp 294-296 °C; 1H NMR
[CDCl3/(CD3)2SO] δ 7.32 (t), 7.50 (d), 7.62 (t), 8.12 (s), 8.38 (d),
8.49 (s), 11.15 (s, NH), 11.99 (s, NH). For microanalysis, a
monoperchlorate salt of the amide mixture was prepared and
had mp >270 °C (slow decomposition) after recrystallization
from water. Satisfactory figures were not obtained for this
hydrated species although the C:N ratio was acceptable.
In Vivo Colon 38 tu m or Assa y of 12. Colon 38 tumors5
were grown subcutaneously from 1 mm3 fragments implanted
in one flank of mice (anesthetized with pentobarbitone 90 mg/
kg). When tumors reached a diameter of approximately 4 mm
(7-8 days), mice were divided into control and drug treatment
groups (5 mice/group), with similar average tumor volumes