Prophylactic and HPV-16 Lipopeptide Vaccines
Journal of Medicinal Chemistry, 2007, Vol. 50, No. 19 4725
utilized for separation: Vydac C4 preparative column (C4,
4-(2,3,4,6-Tetra-O-acetyl-â-D-glucopyranosylamino)-4-oxobu-
tanoic Acid (14). Succinic anhydride (1.09 g; 10.9 mmol) and
2,3,4,6-tetra-O-acetyl-â-D-glucopyranosylazide16 (3.7 g, 9.9 mmol)
were dissolved in dry THF (40 mL). This solution was treated with
a crystal of 4-di(methylamino)pyridine and 10% Pd/C (200 mg),
degassed, and left to stir at RT under H2(g) for 24 h. The solution
was then concentrated, taken up in EtOAc (150 mL), and filtered
through Celite. The filtrate was washed with 5% (v/v) HCl (3 ×
2
14TP1022, 10 µm, 250 mm × 22 mm), Vydac C18 preparative
column (C18, 218TP1022, 10 µm, 250 mm × 22 mm), or a Vydac
C4 semipreparative column (C4SP, 214TP1010, 10 µm, 250 mm
×
10 mm). Prior to purification of the cysteine containing peptides,
cysteine residues were reduced by treating each peptide with tris-
2-carboxyethyl)phosphine hydrochloride (TCEP, approximately 3
(
equiv per cysteine residue).
3
0 mL) and saturated NaCl solution (3 × 30 mL), dried (MgSO
4
),
ESI-MS was performed on a Perkin-Elmer-Sciex API3000 triple
quadrupole mass spectrometer fitted with an atmospheric pressure
ESI source. The ion spray source was coupled to a binary Shimadzu
HPLC system (SCL-10Avp system controller, 2 × LC-10ATvp
pumps, DGU-12A degasser unit, Agilent 1100 series standard
autosampler). Samples (1-10 µL) were injected via a manual
and concentrated to give white crystals, which were triturated with
hexane, filtered, and dried to give 14 (3.15 g, 71.3% yield) as white
crystals. TLC R
55 °C. Anal. (C18
NHCO(CH ) COOH
f
) 0.38 (CHCl
25NO12) C, H, N. ESI-MS: m/z [M -
331.4 (calcd 331.3), [M + H 448.4
3
/MeOH/AcOH, 90:8:2); mp 152-
1
H
]
-
+
+ +
2
2
]
+
+
1
(calcd 448.4), [M + Na ] 470.3 (calcd 470.4). H NMR (500
2
injection port (Rheodyne, CA) into MeCN-H O mobile phases
MHz, CDCl ): δ 1.99, 2.01, 2.03, 2.05 (4 × 3H, s, CH ), 2.46
3
3
containing 0.1% (v/v) formic acid. ESI-MS data was acquired using
Analyst 1.4 (Applied Biosystems/MDS Sciex, Toronto, Canada)
software. All samples were run in positive ion mode.
2
(2H, m, CH ), 2.61 (1H, m, CH
a
), 2.72 (1H, m, CH
b
), 3.81 (1H,
m, H-5), 4.06 (1H, dd, J 12.7, 2.0 Hz, H-6a), 4.27 (1H, dd, J 12.7,
4.0 Hz, H-6b), 4.91 (1H, t, J 9.5 Hz, H-2), 5.04 (1H, d, J 9.9 Hz,
H-4), 5.23 (1H, d, J 9.0 Hz, H-1), 5.28 (1H, t, J 9.5 Hz, H-3), 6.57
Carbohydrate Synthesis. 2,3,4,6-Tetra-O-acetyl-â-D-man-
nopyranosylazide (15). Sodium azide (10.7 g; 170 mmol) was
added to 2,3,4,6-tetra-O-acetyl-R-D-mannopyranosyl bromide14
(
1H, d, J 9.5 Hz, NH). 13C NMR (125 MHz, CDCl
3
): δ 20.55,
2
6
1
0.55, 20.58, 20.70 (4 × CH
3
), 28.59, 30.64 (2 × CH
2
), 61.66 (C-
), 68.12 (C-4), 70.57 (C-2), 72.72 (C-3), 73.55 (C-5), 78.14 (C-
), 169.60, 169,92, 170.72, 171.25, 171.96, 176.36 (6 × CdO).
Peptide Synthesis. Peptides were synthesized by manual step-
(33.8 g, 82.2 mmol) dissolved in anhydrous DMF (140 mL) and
left to stir at 70 °C under Ar(g). After 13 h the mixture was
concentrated, dissolved in EtOAc (200 mL), and filtered to remove
wise SPPS on pMBHA resin using HBTU/DIPEA in situ neutral-
inorganic matter. The filtrate was washed with saturated NaHCO
solution (3 × 50 mL), 5% (v/v) HCl (3 × 50 mL), and saturated
NaCl solution (50 mL), dried (MgSO ), filtered, and concentrated
to give a light-brown oil. The product was crystallized from EtOH
3
10
ization and Boc chemistry. Prior to peptide synthesis, the resin
was swollen in anhydrous DMF (10 mL/g resin) for 1 h. The HCl
salt was then neutralized by 3 × 15 min treatments with 10% (v/v)
DIPEA in anhydrous DMF (10 mL/g of resin) prior to peptide
synthesis. Each amino acid coupling cycle consisted of Boc
deprotection (2 × 1 min treatments with neat TFA), a 1 min DMF
flow-wash, followed by 15-60 min couplings with 4 equiv of
preactivated amino acid. Coupling yields were determined using
4
(
R
[
30 mL) to afford 15 (4.18 g, 13.6% yield) as white crystals. TLC
15
f
) 0.79 (EtOAc); mp 114-116 °C (literature value 124 °C );
25
15
R] -76.4° (c 0.965, CHCl
3
) (literature value -77°, CHCl
3
).
D
+
+ +
ESI-MS: m/z [M - N
(
CDCl
3
] 331.19 (calcd 331.3), [M + Na ] 396.10
1
17
calcd 396.3). Anal. (C14
H
19
N
O
3 9
) C, H, N. H NMR (500 MHz,
), 3.74 (1H, m,
the quantitative ninhydrin test. Where necessary, couplings were
repeated to give coupling yields greater than 99.7%. For coupling
3
): δ 1.97, 2.03, 2.09, 2.19 (4 × 3H, s, CH
3
to a proline residue, the chloranil test1
8,19
was utilized instead of
H-5), 4.19 (1H, dd, J 12.5, 2.4 Hz, H-6a), 4.26 (1H, dd, J 12.3, 5.6
Hz, H-6b), 4.70 (1H, d, J 1.0 Hz, H-1), 5.02 (1H, dd, J 10, 3.2 Hz,
the ninhydrin test. Amino acid activation was achieved by dissolving
amino acids (4.4 equiv) in 0.5 M HBTU/DMF solution (4 equiv)
to which DIPEA (12 equiv) was added. Amino acids were
preactivated for 1 min prior to their addition to the resin. The same
activation method was utilized for sugar derivatives 13 and 14 (with
H-3), 5.24 (1H, t, J 10 Hz, H-4), 5.43 (1H, d, J 2.2 Hz, H-2). 13
C
NMR (125 MHz, CDCl
6
8
3
): δ 20.47, 20.60, 20.66, 20.66 (4 × CH
2.29 (C-6), 65.39 (C-4), 69.24 (C-2), 70.95 (C-3), 74.67 (C-5),
5.12 (C-1), 169.49, 169.88, 169.88, 170.55 (4 × CdO).
-(2,3,4,6-Tetra-O-acetyl-â-D-mannopyranosylamino)-4-ox-
obutanoic Acid (13). Succinic anhydride (0.5 g, 5.0 mmol) and
3
),
5
.74 equiv of DIPEA). Boc-amino acids with the following side
chain protection were utilized for peptide synthesis: Arg(Tos), Asn-
Xan), Asp(OcHx), Cys(pMeBzl), Gln(Xan), Glu(OcHx), His-
4
(
15 (1.0 g, 2.7 mmol) were dissolved in dry tetrahydrofuran (THF,
(DNP), Lys(2-Cl-Z), Ser(Bzl), Thr(Bzl), Tyr(2-Br-Z). The synthetic
6
25 mL). This solution was treated with 10% Pd/C (100 mg),
racemic lipoamino acid Boc-C12-OH was utilized for LCP lipid
degassed, and left to stir at RT under H2(g) for 2 days. The solution
was concentrated, taken up in EtOAc (150 mL), and filtered through
Celite. The filtrate was washed with 5% (v/v) HCl (3 × 50 mL),
core synthesis. After coupling glutamine residues, the resin was
washed with DCM before and after Boc deprotection to prevent
high-temperature catalyzed pyrrolidone carboxylic acid formation.
Acetylation was achieved by treating the resin with a mixture of
acetic anhydride (0.5 mL), DIPEA (0.47 mL), and DMF (14 mL)
for 5 min and repeating for 30 min. Following peptide synthesis,
the following procedures were performed prior to peptide cleavage
where necessary: (1) For peptides containing His(DNP) residues
10
4
dried (MgSO ), and concentrated to give an orange oil. The oil
was dissolved in a minimum volume of 9:1:0.1 EtOAc/hexane/
AcOH, applied to a column (18 cm × 2.5 cm) of silica gel 60, and
eluted with 9:1:0.1 EtOAc/hexane/AcOH. The fractions containing
the pure product, as confirmed by TLC and ESI-MS, were
combined, concentrated, dissolved in toluene (30 mL), and con-
(1-6, 8-11), the DNP group was cleaved by treating the resin
with 20% (v/v) â-mercaptoethanol, 10% (v/v) DIPEA in DMF for
2 × 1 h treatments. (2) For peptides containing an N-terminal Boc-
protecting group (1, 7, 8), the Boc-protecting group was removed,
followed by a 1 min DMF flow-wash. (3) Peptides 2, 4-6, 9, and
centrated to give 13 (0.38 g, 32% yield) as a white foam. TLC R
f
25
)
0.3 (9:1:0.1 EtOAc/hexane/AcOH); [R]D -11.0° (c 0.807,
CHCl
3
). Anal. (C18
H
25NO12) C, H, N. ESI-MS: m/z [M -
-
+
+ +
NHCO(CH
2
)
2
COOH ] 331.21 (calcd 331.3), [M + H ] 448.32
1
1 were de-O-acetylated by agitating the resin in 1:11 hydrazine
+
+
1
(
calcd 448.4), [M + Na ] 470.33 (calcd 470.4). H NMR (500
MHz, CDCl ), 2.49,
): δ 1.95, 2.02, 2.06, 2.20 (4 × 3H, s, CH
.66 (2 × 2H, m, -CH -CH -), 3.76 (1H, m, H-5), 4.07 (1H,
dd, J 12.4, 2.1 Hz, H-6a), 4.27 (1H, dd, J 12.4, 5 Hz, H-6b), 5.10
1H, dd, J 10, 3.3 Hz, H-3), 5.19 (1H, t, J 10 Hz, H-4), 5.32 (1H,
t, J 3.1 Hz, H-2), 5.52 (1H, d, J 9.3 Hz, H-1), 6.66 (1H, d, J 9.3
Hz, -NH-). 13C NMR (125 MHz, CDCl
): δ 20.82, 20.87, 20.95,
1.03 (4 × CH ), 29.16 (CH ), 30.95 (CH ), 62.48 (C-6), 65.51
C-4), 70.21 (C-2), 71.80 (C-3), 74.34 (C-5), 76.34 (C-1), 169.67,
69.93, 170.68, 170.84, 171.27, 176.14 (6 × CdO).
11
hydrate in DMF for 4.5 h. Following removal of these protecting
groups, the resin was thoroughly washed with DMF, DCM, and
MeOH and dried (vacuum desiccator) prior to cleavage using
anhydrous HF.
3
3
2
2
2
(
HF Cleavage. HF cleavage (10 mL of HF/g of resin) was
performed at -5 °C for 2 h. p-Cresol (5% (v/v)) was utilized as a
scavenger, with 5% (v/v) p-thiocresol also added where peptides
contained pMeBzl protected Cys residues (1, 2, 4, 6, 8, 9, 11). For
peptides containing O-acetyl protected sugars (3, 10), 10% (v/v)
p-cresol was used as a scavenger, with no p-thiocresol added.
3
2
3
2
2
(
1