104291-17-0Relevant articles and documents
A facile and improved synthesis of tubercidin and certain related pyrrolo[2,3-d]pyrimidine nucleosides by the stereospecific sodium salt glycosylation procedure [1]
Ramasamy,Imamura,Robins,Revankar
, p. 1893 - 1898 (1988)
A simple synthesis of tubercidin, 7-deazaguanosine and 2'-deoxy-7-deazaguanosine has been accomplished using the sodium salt glycosylation procedure. Reaction of the sodium salt of 4-chloro- and 2-amino-4-chloro-pyrrolo[2,3-d]pyrimidine, 3 and 4, respectively, with 1-chloro-2,3-O-isopropylidene,5-O-(t-butyl)dimethylsilyl-α-D-ribofur nose gave the corresponding protected nucleosides 6 and 7 with β-anomeric configuration. Deprotection of 6 provided 8, which on heating with methanolic ammonia gave tubercidin in excellent yield. Functional group transformation of 7, followed by deisopropylidenation gave 2-aminotubercidin and 2-amino-7-β-ribofuranosylpyrrolo[2,3-d]pyrimidine-4(3H)-thione. Treatment of 7 with 1N sodium methoxide followed by exposure to aqueous trifluoroacetic acid, and ether cleavage furnished 7-deazaguanosine. 2'-Deoxy-7-deazaguanosine and 2'-deoxy-7-deaza-6-thioguanosine were also prepared by using similar sequence of reactions employing 4 and 1-chloro-2-deoxy-3,5-di-O-p-toluoyl-α-D-erythro-pentofuranose.
The base-pairing properties of 7-deaza-2'-deoxyisoguanosine and 2'- deoxyisoguanosine in oligonucleotide duplexes with parallel and antiparallel chain orientation
Seela, Frank,Wei, Changfu
, p. 726 - 745 (2007/10/03)
Oligonucleotides with parallel (ps) or antiparallel (aps) chain orientation containing 7-deaza-2'-deoxyisoguanosine (1) or 2'- deoxyisoguanosine (2) were prepared. The phosphoramidite and phosphonate building blocks 3-6 were synthesized and used in solid-phase synthesis. The diphenylcarbamoyl (dpc) residue was used for the 2-oxo group protection and the isobutyryl (iBu=ib) residue for the amino function. Hybridization experiments were performed with oligonucleotides containing 7-deazaisoguanine or isoguanine. Regarding 7-deazapurine-containing oligonucleotides, the 7- deazaisoguanine cytosine base pair was the strongest in ps-duplexes, while that of 7-deazaisoguanine. 5-methylisocytosine was the most stable one in apsDNA. Ambiguous base pairing of 7-deazaisoguanine with cytosine, 5- methylisocytosine, thymine, and guanine was observed in the case of aps- duplexes, whereas in ps-duplexes, the ambiguity was extended to adenine. The 7-deazaisoguanine-containing duplexes showed almost identical base-pair stabilities as those containing isoguanine. According to this, various base- pair motifs are proposed. The 7-deaza-2'-deoxyisoguanosine was found to be an effective substitute of 2'-deoxyisoguanosine.
7-Deazaisoguanine quartets: Self-assembled oligonucleotides lacking the Hoogsteen motif
Seela, Frank,Wei, Changfu
, p. 1869 - 1870 (2007/10/03)
Oligonucleotides containing consecutive 7-deazaisoguanine residues form self-assembled quartets, indicating that the purine nitrogen-7 of isoguanine is not participating in the hydrogen bonding pattern.
2-Amino-2'-deoxytubercidin and Related Pyrrolopyrimidinyl 2'-Deoxyribofuranosides
Seela, Frank,Steker, Herbert,Driller, Hansjuergen,Bindig, Uwe
, p. 15 - 19 (2007/10/02)
Phase-transfer glycosylation of 2-amino-4-chloro-7H-pyrrolopyrimidine (4a) with 1-chloro-3,5-di-O-(p-toluoyl)-α-D-erythro-pentofuranose (7) yields in a regio- and diastereoselective reaction the crystalline condensation product 5a.Nucleophilic disp