72-08-2Relevant articles and documents
The crystal structure of a homodimeric Pseudomonas glyoxalase I enzyme reveals asymmetric metallation commensurate with half-of-sites activity
Bythell-Douglas, Rohan,Suttisansanee, Uthaiwan,Flematti, Gavin R.,Challenor, Michael,Lee, Mihwa,Panjikar, Santosh,Honek, John F.,Bond, Charles S.
, p. 541 - 544 (2015/10/12)
The Zn inactive class of glyoxalase I (Glo1) metalloenzymes are typically homodimeric with two metal-dependent active sites. While the two active sites share identical amino acid composition, this class of enzyme is optimally active with only one metal per homodimer. We have determined the X-ray crystal structure of GloA2, a Zn inactive Glo1 enzyme from Pseudomonas aeruginosa. The presented structures exhibit an unprecedented metal-binding arrangement consistent with half-of-sites activity: one active site contains a single activating Ni2+ ion, whereas the other contains two inactivating Zn2+ ions. Enzymological experiments prompted by the binuclear Zn2+ site identified a novel catalytic property of GloA2. The enzyme can function as a Zn2+/Co2+ -dependent hydrolase, in addition to its previously determined glyoxalase I activity. The presented findings demonstrate that GloA2 can accommodate two distinct metal-binding arrangements simultaneously, each of which catalyzes a different reaction.
Fermentation process using yeast cells having disrupted pathway from dihydroxyacetone phosphate to glycerol
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Paragraph 0127; 0128; 0129; 0130, (2013/05/09)
In a fermentation process, a cell of a pre-whole genome duplication yeast, which is genetically modified to delete or disrupt a native metabolic pathway from dihydroxyacetone phosphate to glycerol, is cultivated under fermentation conditions and in the presence of a carbon source to produce a desired fermentation product, wherein the glycerol yield is less than 2% based on the weight of the carbon source that is consumed by the cell, and whereby glycerol is added to the fermentation medium.
Ni2 +-activated glyoxalase i from Escherichia coli: Substrate specificity, kinetic isotope effects and evolution within the βαβββ superfamily
Mullings, Kadia Y.,Sukdeo, Nicole,Suttisansanee, Uthaiwan,Ran, Yanhong,Honek, John F.
experimental part, p. 133 - 140 (2012/06/30)
The Escherichia coli glyoxalase system consists of the metalloenzymes glyoxalase I and glyoxalase II. Little is known regarding Ni 2 +-activated E. coli glyoxalase I substrate specificity, its thiol cofactor preference, the presence or absence of any substrate kinetic isotope effects on the enzyme mechanism, or whether glyoxalase I might catalyze additional reactions similar to those exhibited by related βαβ ββ structural superfamily members. The current investigation has shown that this two-enzyme system is capable of utilizing the thiol cofactors glutathionylspermidine and trypanothione, in addition to the known tripeptide glutathione, to convert substrate methylglyoxal to non-toxic d-lactate in the presence of Ni2 + ion. E. coli glyoxalase I, reconstituted with either Ni2 + or Cd2 +, was observed to efficiently process deuterated and non-deuterated phenylglyoxal utilizing glutathione as cofactor. Interestingly, a substrate kinetic isotope effect for the Ni 2 +-substituted enzyme was not detected; however, the proton transfer step was observed to be partially rate limiting for the Cd 2 +-substituted enzyme. This is the first non-Zn 2 +-activated GlxI where a metal ion-dependent kinetic isotope effect using deuterium-labelled substrate has been observed. Attempts to detect a glutathione conjugation reaction with the antibiotic fosfomycin, similar to the reaction catalyzed by the related superfamily member FosA, were unsuccessful when utilizing the E. coli glyoxalase I E56A mutein.
Substrate and reaction intermediate mimics as inhibitors of 3-deoxy-d-arabino-heptulosonate 7-phosphate synthase
Walker, Scott R.,Cumming, Hemi,Parker, Emily J.
supporting information; experimental part, p. 3031 - 3035 (2011/02/25)
3-Deoxy-d-arabino-heptulosonate 7-phosphate (DAH7P) synthase catalyses the aldol-like addition of phosphoenolpyruvate (PEP) to d-erythrose 4-phosphate in the first step of the shikimate pathway to aromatic amino acids. A series of compounds, designed to m
Modelling of the periodic anaerobic baffled reactor (PABR) based on the retaining factor concept
Skiadas,Gavala,Lyberatos
, p. 3725 - 3736 (2007/10/03)
The fact that the active biomass is continuously removed from the continuously stirred anaerobic digesters, leading to long retention times, has been overcome in a number of high rate systems based on immobilization of the active biomass, such as the Upflow Anaerobic Sludge Blanket Reactor (UASBR) and the Anaerobic Baffled Reactor (ABR). A kinetic model of glucose consumption, which was developed based on a batch kinetic experiment, was used for the development of a dynamic model for the prediction of the behaviour of the recently developed flexible reactor called the Periodic Anaerobic Baffled Reactor (PABR). The PABR may be operated as a UASBR, an ABR or at an intermediate mode. The key assumption of the model is that the hydraulic behaviour of a PABR is equivalent with the behaviour of CSTRs in series as concerning the dissolved matter, whereas the biomass is allowed to be retained in the PABR through a retention factor accounting for precipitation. The model adequately predicted the experimental behaviour of a glucose fed PABR. The model was subsequently used to examine the behaviour of the PABR as a function of operating conditions, both for constant and varying loading rates. It was shown that for different cases, the reactor should best be operated as a UASBR or as an ABR. The fact that the active biomass is continuously removed from the continuously stirred anaerobic digesters, leading to long retention times, has been overcome in a number of high rate systems based on immobilisation of the active biomass, such as the Upflow Anaerobic Sludge Blanket Reactor (UASBR) and the Anaerobic Baffled Reactor (ABR). A kinetic model of glucose consumption, which was developed based on a batch kinetic experiment, was used for the development of a dynamic model for the prediction of the behaviour of the recently developed flexible reactor called the Periodic Anaerobic Baffled Reactor (PABR) [(1998) Wat. Sci. Technol. 38(8-9), 401- 408]. The PABR may be operated as a UASBR, an ABR or at an intermediate mode. The key assumption of the model is that the hydraulic behaviour of a PABR is equivalent with the behaviour of CSTRs in series as concerning the dissolved matter, whereas the biomass is allowed to be retained in the PABR through a retention factor accounting for precipitation. The model adequately predicted the experimental behaviour of a glucose fed PABR. The model was subsequently used to examine the behaviour of the PABR as a function of operating conditions, both for constant and varying loading rates. It was shown that for different cases, the reactor should best be operated as a UASBR or as an ABR. (C) 2000 Elsevier Science Ltd.