Organic Process Research & Development
Article
obtained by flash chromatography on silica gel (gradient from
111.6, (d, JCF = 4.7 Hz), 69.5, 52.2, 50.3, 36.6, 34.1, 28.2, 22.7.
IR (neat, cm−1): 2930, 1486, 1366, 1224, 826. HRMS (ESI) m/
z calcd for C12H17FN2O [M + H]+ 224.1325, found 224.1342.
10% to 70% EtOAc/hexanes). The crude solution was solvent
1
switched to NMP and used as such in the next reaction. H
NMR (500 MHz, CD3CN) 7.76 (d, J = 7.8 Hz, 2 H), 7.42 (d, J
= 7.7 Hz, 2 H), 4.16 (br s, 1 H), 4.03−3.95 (m, 1 H), 3.89−
3.82 (m, 1 H), 3.76 (d, J = 14.2 Hz, 1 H), 2.98 (d, J = 14.3 Hz,
1 H), 2.42 (s, 3 H), 2.02−1.88 (m, 2 H), 1.83−1.71 (m, 1 H),
1.55−1.45 (m, 1 H), 1.36 (s, 9 H), 1.25−1.15 (m, 1 H), 1.06
(d, J = 6.8 Hz, 3 H). 13C NMR (126 MHz, CH3CN) 155.7,
146.2, 133.8, 131.0, 128.7, 79.7, 71.4, 47.2, 39.0, 33.8, 28.6,
25.9, 21.7, 20.5, 16.4. IR (neat, cm−1) 2922, 1691, 1360, 1172.
HRMS (ESI) m/z calcd for C19H29NO5S [M + Na]+ 406.1664,
[α]20 +3.1 (c 3.0, CH2Cl2).
D
2-Iodo-5-methyl-benzoic Acid Methyl Ester (16). In a
100 L reaction vessel was charged MeOH (50 L), 2-iodo-5-
methylbenzoic acid (5.85 kg, 22.3 mol), and conc. sulfuric acid
(595 mL, 11.2 mol). The mixture was heated to 65 °C and
stirred for 18 h. It was cooled to 16 °C, and 10 N NaOH (850
mL, 21.9 mol) was added over 10 min until pH 5−6 was
obtained. Caution: a pH over 9 can result in saponification
during the workup. The solution was then concentrated to
about 16 L, and the resulting suspension was partitioned
between IPAc (40 L), water (4 L), NaHCO3 (10 L, 5 wt %),
and brine (10 L, 15 wt %). The layers were cut, and the
aqueous layer was extracted with IPAc (20 L). The combined
organic layers were washed with brine (10 L, 15 wt %) and
assayed by HPLC (6.06 kg, 98% assay yield). The crude
solution was solvent switched to 2-MeTHF and used as such in
the next reaction.An analytical sample was obtained by
found 406.1663. Mp 64−65 °C. [α]20 −27.1 (c 1.0, CHCl3).
D
(2R,5R)-5-(5-Fluoro-pyridin-2-yloxymethyl)-2-methyl-
piperidine-1-carboxylic Acid tert-Butyl Ester (14). In a
100 L reaction vessel was charged the crude solution of
piperidine 12 (3.23 kg, 8.42 mol) in NMP (65 L), 5-fluoro-2-
hydroxypyridine (1.19 kg, 10.5 mol), and Cs2CO3 (7.37 kg,
22.6 mol). The mixture was heated to 60 °C and stirred for 26
h. It was cooled to 15 °C before addition of water (65 L) over 1
h, keeping the temperature below 28 °C. The solution was
extracted with MTBE (65 L). The organic layer was washed
with 10 wt % LiCl (2 × 32 L) and brine (2 × 32 L, 1/2 sat.). It
was assayed by HPLC (2.16 kg, 79% assay yield). The crude
solution was solvent switched to DCM and used as such in the
next reaction. An analytical sample was obtained by flash
chromatography on silica gel (gradient from 10% to 70%
EtOAc/hexanes). 1H NMR (400 MHz, acetone-d6) 8.01 (d, J =
3.1 Hz, 1 H), 7.54 (m, 1 H), 6.82 (dd, J = 9.1, 3.6 Hz, 1 H),
4.37−4.24 (m, 2 H), 4.13 (dd, J = 10.6, 6.3 Hz, 1 H), 3.99 (d, J
= 13.9 Hz, 1 H), 3.09 (dd, J = 13.9, 3.9 Hz, 1 H), 2.15−2.07
(m, 1 H), 1.96−1.73 (m, 2 H), 1.56−1.48 (m, 1 H), 1.33 (m,
10 H), 1.14 (d, J = 6.9 Hz, 3 H). 13C NMR (101 MHz, acetone-
d6) 161.2, 156.3 (d, JCF = 243 Hz), 155.4, 133.7 (d, JCF = 26
Hz), 127.5 (d, JCF = 21 Hz), 112.5 (d, JCF = 5 Hz), 79.0, 66.7,
47.0, 39.5, 33.8, 28.4, 26.3, 21.1, 16.4. IR (neat, cm−1) 2972,
2937, 1687, 1486, 1467, 1366, 1266, 1227, 1150. HRMS (ESI)
m/z calcd for C17H25FN2O3 [M + H]+ 325.1922, found
1
chromatography on silica gel (10% EtOAc/Hex). H NMR
(500 MHz, CDCl3) 7.84 (d, J = 8.1 Hz, 1 H), 7.62 (d, J = 2.1
Hz, 1 H), 6.97 (dd, J = 8.1, 2.1 Hz, 1 H), 3.97−3.86 (m, 3 H),
1
2.33 (s, 3 H). The H NMR spectra obtained are in complete
accord with literature precedent.28
5-Methyl-2-(4,4,5,5-tetramethyl-1,3,2-dioxaborolan-
2-yl)benzoic Acid Methyl Ester (17). In a 100 L reaction
vessel was charged the crude solution of iodide 16 (5.91 kg,
21.4 mol) in 2-MeTHF (35 L) and triethylamine (8.94 L, 64.1
mol). The solution was degassed with N2, and pinacol borane
(4.65 L, 32.1 mol) was added over 15 min while maintaining
the N2 purge. Degassing was continued for 10 min. Trio-
tolylphosphine (325 g, 1.07 mol) and palladium(II) acetate
(120 g, 0.534 mol) were added. The reaction mixture turned
black, and a slow exotherm to 60 °C was observed. The
reaction was heated to 77 °C and stirred for 45 min. It was
cooled to room temperature before aqueous NH4Cl (26 wt %)
was added over 60 min (to control gas evolution and
exotherm). The addition resulted in the formation of a black
precipitate. The supernatant was transferred to an extractor
containing water (40 L). The remaining black slurry was
filtered over Solka Floc, rinsing with MTBE (20 L). The filtrate
was added to the extractor. The layers were cut, and the organic
layer was assayed by HPLC (4.45 kg, 75% assay yield). The
crude solution was solvent switched to 2-MeTHF and used as
such in the next reaction. An analytical sample was obtained by
chromatography on silica gel (gradient from 10% to 40%
325.1921. [α]20 −11.0 (c 0.010, CH2Cl2).
D
5-Fluoro-2-((3R,6R)-6-methyl-piperidin-3-ylmethoxy)-
pyridine (3). In a 50 L reaction vessel was charged the crude
solution of Boc-piperidine 14 (2.15 kg, 6.63 mol) in DCM
(11.4 L). It was cooled to −2 °C, and TFA (5.5 L, 71.4 mol)
was added over 40 min, keeping the temperature below 5.5 °C.
The reaction mixture was warmed to room temperature and
stirred for 3.5 h. It was concentrated under reduced pressure,
and the resulting oil was added to a cooled, stirring solution of
3 N NaOH (28 L) in a 100 L extractor. MTBE (30 L) was
added, and the layers were cut. The organic layer was extracted
with 2 N HCl (30 L, then 10 L). The combined aqueous layers
were cooled to 9 °C, and 10 N NaOH was added until pH
reached 13 (temperature reaches 21 °C). This solution was
extracted with MTBE (25 L, then 10 L) and assayed by HPLC
(1.46 kg, 98% yield, >99.7% purity). The crude solution was
solvent switched to DCM and used as such in the next reaction.
An analytical sample was obtained by concentration under
reduced pressure. 1H NMR (400 MHz, CDCl3) 7.96 (d, J = 3.1
Hz, 1 H), 6.69 (dd, J = 9.0, 3.6 Hz, 1 H), 4.11 (dd, J = 10.5, 5.5
Hz, 1 H), 4.00 (dd, J = 10.5, 7.2 Hz, 1 H), 3.28−3.22 (m, 1 H)
2.63−2.54 (m, 1 H), 2.45 (t, J = 11.4 Hz, 1 H), 1.97−1.87 (m,
2 H), 1.74−1.68 (m, 1 H), 1.18−1.09 (m, 2 H), 1.07 (d, J = 6.3
1
EtOAc/Hex). H NMR (500 MHz, CDCl3) 7.75 (s, 1H), 7.40
(d, J = 7.5 Hz, 1 H), 7.32 (d, J = 7.6 Hz, 1 H), 3.90 (s, 3 H),
2.37 (s, 3 H), 1.41 (s, 12 H). 13C NMR (125 MHz, CDCl3)
168.6, 139.0, 133.6, 132.5, 132.3, 129.4, 83.9, 52.2, 24.9, 21.3
(one overlapping peak, as no other peaks are detected even
with prolonged scans). IR (neat, cm−1) 2980, 1718, 1347, 1058,
857. HRMS (ESI) m/z calcd for C15H21BO4 [M]+ 276.1533,
found 276.1543. Mp 62.0−64.0 °C.
5-Methyl-2-pyrimidin-2-yl-benzoic Acid Methyl Ester
(18). In a 100 L reaction vessel was charged the crude solution
of pinacol boronate 17 (4.38 kg, 15.8 mol) in 2-MeTHF (35
L), 2-chloropyrimidine (2.18 kg, 19.0 mol), Na2CO3 (5.04 kg,
47.5 mol), and water (11.7 L). The thick slurry was degassed
with N2 for 40 min after which PdCl2(dppf)·CH2Cl2 (518 g,
0.634 mol) was added. The reaction mixture was heated to 74
°C and stirred for 16 h. It was cooled to room temperature.
Hz, 3 H). 13C NMR (101 MHz, CDCl3) 160.1, 155.3 (d, JCF
246.8 Hz), 133.0 (d, JCF = 27.2 Hz), 126.5 (JCF = 21.2 Hz),
=
F
dx.doi.org/10.1021/op3002678 | Org. Process Res. Dev. XXXX, XXX, XXX−XXX