C. A. Schalley et al.
Macrocycle 13: Macrocycle 12 (0.02 g, 0.019 mmol) was dissolved in a 1:1
mixture of CH2Cl2/CH3OH. KOH (0.005 g, 0.095 mmol) was added and
the reaction mixture was stirred at room temperature for 12 h. Half of
the solvent was evaporated under reduced pressure and the remaining or-
ganic phase was washed three times with H2O. The organic phases were
collected, dried over MgSO4, and the solvent was evaporated under re-
duced pressure. Macrocycle 13 was obtained as a yellowish-white solid
7.24–7.28 (m, 2H; ArH(5,5’’-tpy)), 7.74 (d, J=8.3 Hz, 2H; ArH), 7.76–
7.81 (m, 2H; ArH(4,4’’-tpy)), 7.91 (d, J=8.3 Hz, 2H; ArH), 8.09 (s, 2H;
4,6-t-Bu isophthH), 8.13 (s, 1H; 2-t-Bu isophthH), 8.17 (s, 2H; 4,6-
isophthH), 8.37 (s, 1H; 2-isophthH), 8.43 (s, 4H; NH), 8.54 (d, J=8 Hz ,
2H; ArH(3,3’’-tpy)), 8.64 (d, J=4.6 Hz, 2H; ArH(6,6’’-tpy)), 8.71 ppm (s,
2H; ArH(3’,5’-tpy)); 13C NMR (100 MHz, CDCl3/CD3OD (4:1)): d=
18.6, 22.9, 26.3, 31.1, 35.2, 36.6, 45.2, 118.8, 121.9, 123.7, 124.2, 126.2,
127.7, 127.9, 128.5, 128.6, 128.7, 129.5, 130.9, 131.4, 131.5, 131.9, 132.0,
132.3, 134.2, 135.0, 135.2, 137.4, 138.0, 140.0, 142.1, 148.0, 148.1, 148.9,
149.7, 153.4, 155.9, 156.0, 163.1, 166.4, 166.8 ppm; ESIMS: m/z (%): 1268
(100) [M+H]+.
(0.014 g, 75%). 1H NMR (400 MHz, CDCl3): d=1.42 (s, 9H; C
ACHTRE(UNG CH3)3),
1.52–1.55 (br, 4H; CH3), 1.62–1.66 (br, 8H; CH2), 2.16–2.18 (br, 24H;
ArCH3), 2.30–2.32 (br, 8H; CH2), 6.97 (br, 8H; ArH), 7.34 (br, 2H; 4,6-
t-Bu-isophthH), 7.43 (br, 3H; 4,6-acetylene-isophthH, 2-t-Bu-isophthH),
7.99 ppm (s, H; 2-acetylene-isophthH); 13C NMR (125 MHz, CDCl3): d=
19.0, 23.0, 26.5, 31.3, 35.4, 45.2, 79.9, 81.7, 122.9, 126.6, 128.6, 130.9, 131.1,
134.4, 134.7, 135.4, 148.1, 148.3, 154.0, 165.7 ppm; ESIMS: m/z (%): 985
(15) [M+H]+, 1007 (100) [M+Na]+; HRMS (ESI+): m/z calcd for
C66H72N4NaO4+: 1007.5446 [M+Na]+; found: 1007.5360.
Macrocycle 17: Pyridine-4-boronic acid pinacol ester (0.025 g,
0.120 mmol) was poured into a mixture of 14 (0.1 g, 0.096 mmol), [Pd-
AHCTRE(UGN PPh3)4] (0.0035 g, 0.003 mmol), and Cs2CO3 (0.047 g, 0.144 mmol) in dry
toluene (10 mL) and dry DMF (10 mL). The temperature was raised to
1008C whilst argon was bubbled through the solution and then it was
heated at 120–1308C for 2 d under argon before the solvents were re-
moved at reduced pressure. The residue was purified by column chroma-
tography (silica gel, eluting with a 95:5 mixture of CH2Cl2/CH3OH) to
give 10 as a white solid (82 mg, 83.4%). 1H NMR (400 MHz, [D7]DMF):
Macrocycle 14: A solution of 5-tert-butyl isophthaloyl dichloride (0.26 g,
1 mmol) in dry CH2Cl2 (250 mL) and a mixture of 7 (0.85 g, 1 mmol) and
NEt3 (2 mL) were simultaneously added dropwise to dry CH2Cl2
(1200 mL) over 8 h by using an automatic solvent pump, while the
system was kept under an argon atmosphere. The cloudy solution was
stirred at room temperature overnight. The solvents were then evaporat-
ed and the product was isolated by column chromatography (silica gel,
eluting with a (15:1!6:1) CH2Cl2/EtOAc mixture) as a white solid
(0.21 g, 20%). 1H NMR (500 MHz, CDCl3/CD3OD (5:1)): d=1.33 (s,
d=1.41 (s, 9H; CACHTRE(UGN CH3)3), 1.52–1.54 (br, 4H; CH2), 1.62–1.64 (br, 8H;
CH2), 2.18 (s, 12H; ArCH3), 2.20 (s, 12H; ArCH3), 2.47 (br, 8H; CH2),
7.23 (s, 8H; ArH), 7.87 (d, J=6.1 Hz, 2H; ArH(py)), 8.21 (s, 2H; 4,6-t-
Bu-isophthH), 8.49 (s, 2H; 4,6-py isophthH), 8.77 (s, H; 2-t-Bu-
isophthH), 8.78 (d, J=6.1 Hz, 2H; ArH(py)), 8.92 (s, H; 2-py-isophthH),
9.30 (s, 2H; NH), 9.47 ppm (s, 2H; NH); 13C NMR (CDCl3): d=18.9,
19.0, 22.9, 24.7, 26.4, 31.1, 31.3, 35.4, 36.5, 45.2, 121.7, 126.5, 128.5, 129.9,
131.2, 134.7, 134.9, 135.7, 150.3, 162.6, 164.7 ppm; ESIMS: m/z (%): 1038
(100) [M+H]+.
9H; CACHTREUNG(CH3)3), 1.43–1.44 (br, 4H; CH2), 1.55–1.56 (br, 8H; CH2), 2.08–
2.10 (br, 24H; ArCH3), 2.24 (br, 8H; CH2), 6.90 (s, 8H; ArH), 8.07 (s, H;
2-t-Bu-isophthH), 8.10 (s, 2H; 4,6-Br-isophthH), 8.19 (s, 2H; 4,6-t-Bu-
isophthH), 8.21 (s, H; 2-Br-isophthH), 8.65 (s, 2H; NH), 8.86 ppm (s, 2H;
NH); 13C NMR (125 MHz, CDCl3/CD3OD (5:1)): d=18.5, 31.1, 22.9,
26.4, 35.0, 45.1, 123.6, 126.0, 128.3, 131.2, 131.5, 133.9, 134.4, 135.3, 135.4,
136.1, 148.0, 148.2, 153.3, 164.9 ppm; ESIMS: m/z (%): 1041.5 (6)
Macrocycle 18: Pyrimidine-5-boronic acid pinacol ester (51.5 mg,
0.250 mmol) was added to a mixture of 14 (208 mg, 0.200 mmol), [Pd-
AHCTRE(UGN PPh3)4] (6.93 mg, 6.0 mmol), and Cs2CO3 (97.8 g, 0.300 mmol) in dry tolu-
ene (10 mL) and dry DMF (10 mL) under argon. The reaction was
heated at 1208C for 2 d. All solvents were evaporated and the crude
product was purified by column chromatography (silica gel, eluting with
a (95:5) CH2Cl2/CH3OH). The product, obtained as the second band
from the column, was dried at high vacuum (166 mg, 83%). 1H NMR
[M+H]+, 1063.4 (52) [M+Na]+, 2081.9 (8)
[2M+Na+].
[2M+H+], 2102.9 (100)
ACHTREUNG
Macrocycle 15: Macrocycle 14 (360 mg, 0.345 mmol), bis(pinacolato)di-
boron (92.4 mg, 0.362 mmol), [PdCl2A(dppf)] (14.1 mg, 0.0173 mmol), and
CTHREUNG
dried potassium acetate (101.7 mg, 1.035 mmol) were added to dried and
argon-bubbled DMSO (10 mL). The mixture was kept at 808C overnight
under an argon atmosphere. After cooling to room temperature, CH2Cl2
(20 mL) and water (20 mL) were added and the product was extracted
into the organic phase, which was washed three times with water
(20 mL). The combined organic phases were dried in vacuo and the resi-
due was examined by TLC. No bromo macrocycle starting material was
detected on the TLC plate, so the residue was applied to a 10 cm column
(silica gel, eluting with a (1:1) CH2L2/EtOAc mixture). The only band
was collected and dried to give 15 as a white solid (308 mg, 82%).
1H NMR (250 MHz, CDCl3): d=1.35 (s, 12H CH3 (pinacol)), 1.40 (s, 9H;
(250 MHz, CDCl3): d=1.38 (s, 9H; CACHTRE(UNG CH3)3), 1.42–1.65 (b, 12H; CH2),
2.14 (s, 24H; ArCH3), 2.34 (b, 8H; CH2), 6.97 (s, 8H; ArH), 7.96 (s, 2H;
NH), 8.15 (s, 1H; 2-isophthH), 8.19 (s, 2H; 4,6-isophthH); 8.40 (s, 2H;
4,6-isophthH), 8.56 (s, 2H; NH), 8.64 (s, 1H; 2-isophthH), 9.04 (s, 2H;
ArHACTHER(GNU pyr)), 9.16 ppm (s, 1H; ArHHCATRE(UGN pyr)) (the spectrum always showed
that there were two equivalents of DMF associated with the macrocycle
even after extensive drying); 13C NMR (62.5 MHz, CDCl3): d=18.7, 18.8,
22.6, 26.1, 29.5, 30.6, 31.0, 35.1, 36.2, 44.8, 122.9, 125.9, 126.1, 128.2, 128.4,
128.5, 129.7, 131.1, 131.3, 131.4, 131.5, 131.9, 132.8, 134.2, 134.5, 134.7,
135.7, 147.7, 148.2, 153.6, 154.8, 157.5, 162.4, 164.3, 165.5 ppm; ESIMS:
+
m/z (%): 1039.6 [M+H]+; HRMS (ESI+): m/z calcd for C68H75N6O4
1039.5844 [M+H]+; found: 1039.579.
:
CACHTREUNG(CH3)3), 1.45–1.69 (b, 12H; CH2), 2.14 (s, 12H; ArCH3), 2.16 (s, 12H;
ArCH3), 2.38 (b, 8H; CH2), 6.94 (s, 8H; ArH), 7.94 (s, 1H; 2-isophthH),
8.19 (s, 2H; 4,6-isophthH), 8.31 (s, 1H; 2-isophthH), 8.51 ppm (s, 2H;
4,6-isophthH); 13C NMR (62.5 MHz, CDCl3): d=18.7, 22.7, 24.7, 26.2,
29.5, 31.0, 35.2, 45.0, 121.9, 126.2, 128.4, 128.8, 130.8, 134.2, 134.5, 136.5,
147.8, 153.7, 165.3 ppm; ESIMS: m/z (%): 1087.56 (100) [M+H]+,
1109.54 (30) [M+Na]+, 1125.51 (46) [M+K]+.
Rotaxane 19: Dibenzo[18]crown-6 (13.0 mg, 0.036 mmol), 14 (150 mg,
0.144 mmol), potassium carbonate (198 mg, 1.44 mmol), a,a’-dibromo-p-
xylene (38.0 mg, 0.144 mmol), and tritylphenol (96.9 mg, 0.288 mmol)
were stirred in dry CH2Cl2 (20 mL) for a week. The solvent was then
evaporated and the residue was eluted on a silica column with 2% meth-
anol in CH2Cl2. The second band was collected as the pure rotaxane
Macrocycle 16: 4-(2,2’;6’,2’’-Terpyridine-4’-yl)phenylboronic acid pinacol
ester (52.3 mg, 0.120 mmol) was poured into a mixture of 14 (100 mg,
0.096 mmol), [PdACHTREUNG(PPh3)4] (3.45 mg, 0.003 mmol), and Cs2CO3 (46.9 mg,
1
(100 mg, 38%). Rf =0.5; H NMR (250 MHz, CDCl3): d=1.27 (s, 9H; C-
AHCTRE(GNU CH3)3), 1.40–1.65 (br, 12H; CyCH2), 1.81 (s, 12H; PhCH3), 1.83 (s, 12H;
PhCH3), 2.26 (br, 8H; CyCH2), 4.22 (s, 4H; OCH2), 5.98 (s, 4H; PhHaxle),
6.34 (d, J=4.5 Hz, 4H; PhHstopper), 6.96 (s, 8H; PhH), 6.98 (d, J=4.5 Hz,
4H; PhHstopper), 7.07–7.18 (m, 30H; PhHstopper), 7.46 (s, 1H; 2-isophthH),
7.63 (s, 1H; 2-isophthH), 8.05 (s, 2H; 4,6-isophthH), 8.14 ppm (s, 2H;
4,6-isophthH); 13C NMR (62.5 MHz, CDCl3 +2 drops of CD3OD): d=
18.3, 30.8, 35.0, 64.0, 110.5, 112.9, 113.1, 125.6, 125.8, 126.4, 126.5, 127.1,
0.144 mmol) in dry toluene (10 mL) and dry DMF (10 mL). The tempera-
ture was raised to 1008C whilst argon was bubbled through the solution
and then it was heated at 120–1308C for 2 d under argon before the sol-
vents were removed at reduced pressure. The remaining pale-pink solid
was first examined by TLC on silica gel with a 95:5 mixture of CH2Cl2/
CH3OH to show that no appreciable amount of starting material re-
mained. The residue was purified by column chromatography (neutral
Al2O3, eluting with 1% CH3OH in CH2Cl2) to give the product as a
white powder (80.2 mg, 66%). Rf =0.88; 1H NMR (400 MHz, CDCl3):
127.2, 127.3, 127.4, 130.5, 130.6, 130.7, 130.8, 132.3, 134.7, 134.8, 135.9,
+
140.8, 140.3, 161.6 ppm; HRMS (ESI+): m/z calcd for C128H133BrN5O6
1914.9434 [M+HNEt3]+; found: 1914.9560.
:
d=1.35 (s, 9H; C
ArCH3), 2.09 (s, 12H; ArCH3), 2.26 (br, 8H; CH2), 6.92 (s, 8H; ArH),
A
Rotaxane 20 (Synthesis starting from macrocycle 17): Dibenzo[18]crown-
6 (31.1 mg, 0.0863 mmol), 17 (367 mg, 0.345 mmol), potassium carbonate
10024
ꢁ 2008 Wiley-VCH Verlag GmbH & Co. KGaA, Weinheim
Chem. Eur. J. 2008, 14, 10012 – 10028