Self-Assembly of 2-Ureido-4-pyrimidinones
m/z (%): 751 (35) [2M+Na]+, 387 (100) [M+Na]+; HRMS
ACTHUNRTGNE(GNU ESI) calcd
Experimental Section
for [2M+Na]+: 751.5569; found: 751.5568; elemental analysis: calcd (%)
for C20H36N4O2 (364.53): C 65.90, H 9.95, N 15.36; found: C 66.28,
H 10.22, N 15.18.
ACHTUNGTRENNUNG(S-G1)2: A solution of 10 (379 mg, 2.05 mmol) and imidazolide 22
(539 mg, 2.46 mmol) in CHCl3 (10 mL) was heated to 608C for 6 h. The
solution was cooled to 258C and filtered, washed with 1m HCl (2ꢁ
30 mL) and brine, dried (MgSO4), filtered and concentrated in vacuo to
afford the desired compound (651 mg, 95%) as a white solid. M.p.: 174–
1758C; 1H NMR (300 MHz, CDCl3, 258C): d=13.10 (s, 1H, UPyNH),
11.89 (s, 1H, CH2NHCONH), 10.08 (brs, 1H, CH2NH), 5.78 (s, 1H,
AHCTUNGTREG(NUNN L-G2)2: A solution of 14 (555 mg, 1.19 mmol) and imidazolide 22
(340 mg, 1.55 mmol) in CHCl3 (10 mL) was heated to 608C for 12 h then
cooled to 258C and filtered. The solution was washed with 1m HCl (2ꢁ
30 mL) and brine, dried (MgSO4), filtered, and concentrated in vacuo.
The residue was purified by flash chromatography (hexane/EtOAc=5:1)
to afford the desired compound (670 mg, 91%) as a white solid. Rf =0.40
C=CH), 3.15 (t, 2H, 3J
1.65–1.05 (m, 11H), 0.85 ppm (d, 12H, 3J
AHCTUNGTRENNUNG
ACHTUNGTRENNUNG
1
(hexane/EtOAc=3:1); m.p. 41–428C; H NMR (300 MHz, CDCl3, 258C):
(75.5 MHz, CDCl3, 258C): d=173.0, 156.8, 154.9, 148.2, 106.8, 43.9, 38.4,
35.7, 29.3, 28.5, 22.82, 22.76, 19.1 ppm; IR (KBr): n˜ =3217, 2956, 2866,
2604, 1699, 1662, 1591, 1522, 1467, 1444, 1408, 1383, 1365, 1338, 1303,
d=13.15 (s, 1H), 11.83 (s, 1H), 10.19 (s, 1H, NHCH2), 5.77 (s, 1H,
C=CH), 3.19 (q, 2H, 3J
ACHTUNGTRENNUNG
1.65–1.35 (m, 6H), 1.35–1.00 (m, 33H), 0.84 ppm (d, 24H, 3J
ACHTUNGTRENNUNG
1294, 1259, 1248, 1170, 1156, 1139, 1117 cmÀ1; MS
ACHTUNGTRENNUNG
6.6 Hz, CH3); 13C NMR: d=173.1, 156.7, 154.8, 148.2, 106.7, 40.6, 37.9,
37.3, 36.01, 35.99, 34.2, 34.1, 31.3, 31.2, 28.5, 27.0, 23.8, 22.8, 19.0 ppm; IR
(KBr): n˜ =3215, 2954, 2926, 2868, 2718, 2606, 1701, 1668, 1589, 1526,
(70) [2M+Na]+, 337 (100) [M+H]+; HRMS
ACHTUNGTRENNUNG
695.4943; found: 695.4955; elemental analysis: calcd (%) for C18H32N4O2
(336.5): C 64.25, H 9.59, N 16.64; found: C 64.17, H 9.66, N 16.68.
1467, 1413, 1383, 1366, 1304, 1255, 1170, 1139, 1041, 1016 cmÀ1; MS
ACHTUNGTRENNUNG
m/z (%) 1234 (39) [2M+H]+, 617 (100) [M+H]+; HRMS
ACHTUNGTRENNUNG
ACHTUNGTRENNUNG(S-G2)2: A solution of 11 (530 mg, 1.14 mmol) and imidazolide 22
[2M+H]+: 1234.1383; found: 1234.1377; elemental analysis: calcd (%)
for C38H72N4O2 (617.0): C 73.97, H 11.76, N 9.08; found: C 73.62, H 11.95,
N 8.90.
(310 mg, 1.41 mmol) in CHCl3 (10 mL) was heated to 608C for 6 h. The
solution was cooled to 258C, filtered, then washed with 1m HCl (2ꢁ
30 mL) and brine, dried (MgSO4), filtered, and concentrated in vacuo.
The residue was purified by flash chromatography (hexane/EtOAc=4:1)
to afford the desired compound (529 mg, 79%) as a pale yellow solid.
Rf =0.75 (hexane/EtOAc=4:1); m.p.: 60–618C; 1H NMR (300 MHz,
AHCTUNGTERG(NUNN L-G3)2: A solution of 15 (137 mg, 0.141 mmol) and imidazolide 22
(40 mg, 0.183 mmol) in CHCl3 (5 mL) was heated to 608C for 12 h. The
solution was cooled to 258C and filtered, then washed with 1m HCl (2ꢁ
15 mL) and brine, dried (MgSO4), filtered, and concentrated in vacuo.
The residue was purified by flash chromatography (hexane/EtOAc=
10:1) to afford the desired compound (140 mg, 88%) as a pale yellow
liquid. Rf =0.42 (hexane/EtOAc=5:1); 1H NMR (300 MHz, CDCl3,
258C): d=13.18 (s, 1H), 11.87 (s, 1H), 10.20 (s, 1H, NHCH2), 5.81 (s,
CDCl3, 258C): d=13.14 (s, 1H, UPyNH), 11.90 (s, 1H, CH2NHCONH),
10.10 (br s, 1H, CH2NH), 5.79 (s, 1H, C=CH), 3.16 (q, 2H, J
3
(H,H)=6.0,
CH2N), 2.20 (s, 3H, UPy-CH3), 1.80–1.60 (m, 1H), 1.55–1.05 (m, 34H),
0.85 ppm (d, 24H, 3J(H,H)=6.6, CH3); 13C NMR (75.5 MHz, CDCl3,
ACHTUNGTRENNUNG
258C): d=172.9, 156.8, 154.9, 148.0, 106.8, 44.1, 37.9, 37.8., 36.0, 34.2,
32.2, 31.35, 31.29, 28.5, 23.6, 22.9, 19.0 ppm; IR (KBr): n˜ =3227, 3014,
2953, 2927, 2865, 2716, 2601, 1702, 1659, 1587, 1528, 1467, 1416, 1382,
1H, C=CH), 3.21 (q, 2H, 3J
C=CCH3), 1.67–1.37 (m, 11H), 1.37–1.02 (m, 76H), 0.87 ppm (d, 48H, J-
(H,H)=6.6 Hz, CH3); 13C NMR (75.5 MHz, CDCl3, 258C): d=173.1,
ACHTUNGRTEN(NUNG H,H)=5.1 Hz, CH2NH), 2.21 (s, 3H,
3
1365, 1302, 1260, 1245, 1170, 1141 cmÀ1; MS
ACHTUNGTRENNUNG
AHCTUNGTRENNUNG
[2M+H]+, 589 (100) [M+H]+; HRMS
AHCTUNGTRENNUNG
156.7, 154.9, 148.2, 106.9, 40.8, 37.9, 37.7, 37.5, 36.1, 34.5, 34.3, 31.4, 31.3,
28.6, 27.2, 24.0, 23.8, 22.91, 22.90, 19.0 ppm; IR (KBr): n˜ =3214, 2950,
2925, 2864, 2717, 2596, 1699, 1664, 1613, 1592, 1526, 1463, 1416, 1385,
1178.0757; found: 1178.0762; elemental analysis: calcd (%) for
C36H68N4O2 (589.0): C 73.42, H 11.64, N 9.51; found: C 73.90, H 12.00,
N 9.28.
1367, 1324, 1303, 1252, 1189, 1172, 1138, 1036 cmÀ1; MS
ACHTUNGTRENNUNG
ACHTUNGTRENNUNG(S-G3)2: A solution of 12 (86 mg, 0.091 mmol) and imidazolide 22
2244 (35) [2M+H]+, 1122 (100) [M+H]+; HRMS
[2M+H]+ 2243.2651; found: 2243.2662.
ACHTUNGTRENNUNG
(40 mg, 0.18 mmol) in CHCl3 (2 mL) was heated to 608C for 6 h. The so-
lution was cooled to 258C and filtered. The resulting solution was con-
centrated in vacuo. The residue was purified by flash chromatography
(hexane/EtOAc=20:1 gradient to 5:1) to afford the desired compound
(70 mg, 70%) as a pale yellow liquid. Rf =0.56 (hexane/EtOAc=10:1);
1H NMR (300 MHz, CDCl3, 258C): d=13.17 (s, 1H, UPyNH), 11.91 (s,
1H, CH2NHCONH), 10.11 (brs, 1H, CH2NH), 5.80 (s, 1H, C=CH), 3.17
Compound 24: A mixture of p-bromonitrobenzene (0.65 g, 3.22 mmol),
Pd(OAc)2 (0.072 g, 0.32 mmol), (oxydi-2,1-phenylene)bis(diphenylphos-
AHCTUNGTRENNUNG
phine) (0.35 g, 0.65 mmol), and Cs2CO3 (0.68 g, 3.52 mmol) in toluene
(10 mL) was degassed in a sealed tube using three freeze-pump-thaw
cycles. After warming the mixture to room temperature, 10 (0.65 g,
3.51 mmol) was first dissolved in toluene (5 mL) and then added using a
syringe. The mixture was then heated to 1108C for 2 d with stirring. Et2O
was added to the reaction mixture after cooling to room temperature.
The mixture was filtered through a pad of Celite and the filtrate was
evaporated in vacuo to give a yellow oil which was purified by flash chro-
matography on silica gel (hexane/EtOAc=15:1) to give the desired com-
pound (0.66 g, 67%) as a yellow oil. Rf =0.17 (hexane/EtOAc=15:1);
1H NMR (300 MHz, CDCl3, 258C): d=8.13–8.02 (2H, m, ArH), 6.57–
(q, 2H, 3J
83H), 0.86 ppm (d, 48H, 3J
AHCTUNGTRENNUNG
ACHTUNGTRENNUNG
CDCl3, 258C): d=173.0, 156.9, 154.9, 148.0, 106.9, 44.1, 38.2, 37.9, 37.6,
36.1, 34.6, 34.3, 34.2, 32.3, 31.4, 28.6, 28.3, 23.8, 22.9, 19.1 ppm; IR (KBr):
n˜ =3440, 3220, 2950, 2924, 2863, 2720, 2610, 1698, 1664, 1651, 1613, 1591,
1537, 1466, 1385, 1367, 1326, 1250, 1187, 1170, 1039, 1021 cmÀ1; MS
ACHTUNGTRENNUNG
m/z (%) 2188 (10) [2M+H]+, 1094 (85) [M+H]+; HRMS
ACHTUNGTRENNUNG
[2M+H]+: 2187.2025; found: 2187.2036; elemental analysis: calcd (%)
for C72H140N4O2 (1093.9): C 79.05, H 12.90, N 5.12; found: C 79.39,
H 13.13, N 4.76.
6.45 (2H, m, ArH), 4.46 (1H, br s, NH), 3.11 (2H, t, 3J
NCH2), 1.66–1.57 (1H, m, CH), 1.51 (2H, septet, 3J
AHCTUNGTRENNUNG
ACHTUNGTRENNUNG
CHMe2), 1.41–1.28 (4H, m, CH2), 1.27–1.12 (4H, m, CH2), 0.89 ppm
(12H, d, 3J(H,H)=6.6 Hz, CH3); 13C NMR (75.5 MHz, CDCl3, 258C):
d=154.1, 136.9, 126.4, 110.8, 46.8, 37.8, 35.7, 29.4, 28.3, 22.5 ppm; MS-
(ESI): m/z (%): 307 (100) [M+H]+; HRMS(ESI) calcd for [M+H]+
307.2385; found: 307.2395; elemental analysis: calcd (%) for C18H30N2O2
(306.4): C 70.55, H 9.87, N 9.14; found: C 70.32, H 9.89, N 9.12.
ACHTUNGTRENNUNG(L-G1)2: A solution of 13 (510 mg, 2.39 mmol) and imidazolide 22
AHCTUNGTRENNUNG
(630 mg, 2.87 mmol) in CHCl3 (20 mL) was heated to 608C for 12 h. The
solution was cooled to 258C and filtered, then washed with 1m HCl (2ꢁ
30 mL) and brine, dried (MgSO4), filtered, and concentrated in vacuo.
The solid was recrystallized in CH2Cl2/MeOH (1:1) solution and afforded
the desired compound (408 mg, 47%) as a white crystal. M.p.: 144–
1458C; 1H NMR (300 MHz, CDCl3, 258C): d=13.13 (s, 1H, UPyNH),
11.86 (s, 1H, CH2NHCONH), 10.17 (brs, 1H, CH2NH), 5.79 (s, 1H,
G
ACHTUNGTRENNUNG
S-G1-probe: NaH (60% in mineral oil) (0.15 g, 3.75 mmol) was added to
a THF solution (10 mL) of 24 (0.63 g, 2.06 mmol) at 08C for 30 min. MeI
(0.25 mL, 3.98 mmol) was added to the solution using a syringe. The mix-
ture was then stirred at 258C for 24 h. H2O was added to the reaction
mixture and the aqueous layer was extracted with CH2Cl2 (3ꢁ50 mL).
The combined organic extracts were washed with brine, dried (MgSO4),
filtered, and evaporated in vacuo to give a yellow oil which was purified
by flash chromatography (hexane/EtOAc=10:1) to give the target com-
C=CH), 3.21 (q, 2H, 3J
ACHTUNGTRENNUNG
1.75–1.40 (m, 3H), 1.35–1.05 (m, 12H), 0.84 ppm (d, 12H, 3J
ACHTUNGTRENNUNG
6.6 Hz, CH3); 13C NMR (75.5 MHz, CDCl3, 258C): d=173.1, 156.7, 154.9,
148.3, 106.8, 40.6, 37.8, 36.0, 31.3, 31.0, 28.5, 27.0, 22.8, 19.1 ppm; IR
(KBr): n˜ =3400, 3215, 2954, 2926, 2860, 1700, 1667, 1586, 1525, 1457,
1413, 1383, 1366, 1303, 1254, 1170, 1147, 1137, 1040, 1019 cmÀ1; MS
ACTHNUTRGNE(NUG ESI):
Chem. Asian J. 2010, 5, 2249 – 2257
ꢀ 2010 Wiley-VCH Verlag GmbH & Co. KGaA, Weinheim
2255