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HDAC activity was measured using the HDAC Fluorescent
Activity assay/Drug Discovery kit according to the manufacturer’s
instructions (AK-500, BIOMOL International) [40,41]. TSA and the
fluorescent substrate were purchased with the Fluor-de-Lys kit. The
assay measures the activity of HDACs to deacetylate a substrate that
contains acetylated lysine side chains. The HeLa extracts (supplied
in the kit) were added to each well in a 96-well plate except wells
containing the untreated control samples. The assay buffer, TSA
(1
m
M), 4-phenylbutyric acid (1.5 mM) and (ꢀ)-MRJF4 (10
mM) were
added to appropriate wells. Only the assay buffer solution was
added to the LNCaP and PC3 extracts (treated as described in the
nuclear proteins extraction procedure). The HDAC reaction initiated
by adding the Fluor de Lys substrate (25 mL) to each well and mixing
thoroughly. The assay was performed at 25e37 ꢁC. The reaction was
quenced after 10 min with the Fluor the Lys developer solution
(50
mL) and the plate was incubated at room temperature for
10e15 min. The substrate is deacetylated by the HDAC1, HDAC2,
HDAC3, HDAC4, HDAC7, HDAC8, HDAC9 and SIRT1 enzymes. The
intensity of the fluorescent signal is indicative of the amount of
HDAC activity in the sample. The fluorescence of each reaction was
measured on a fluorometric reader (Perkin Elmer Wallac 1420-032
Victor2 multilaber counter) with the excitation set to 360 nm and
the emission set to 460 nm. The percent inhibition for each fluo-
rescence reading of the inhibited reaction was calculated relative to
the fluorescence of the control reaction. Experiments were per-
formed in triplicate.
Acknowledgments
Acknowledgments. This work was supported by grants (FIRB
2003, No RBNE03FH5Y and PRIN 2005 and 2007, No 2005032713)
from MIUR (Rome).
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