Crystal Growth & Design
ARTICLE
Table 3. Characteristic Measures from Computed (B3LYP/
6-311G(d)) and X-ray Structures of the Different Aggregates
of 5-(4-Hexylphenyl)isatin (3a) and Isatina
interactions which are effective between the molecules and which
will help for the rational design of new functional materials (e.g.,
in the field of liquid crystals or crystal engineering) on the basis of
this structural motif. The presented DFT studies support the
experimentally found supramolecular basic units, i.e. dimers and
strands, in a qualitative manner. However, at the level of theory
chosen here, only the strongest hydrogen bonds could be
reproduced in the calculated structures while all the weaker
interactions remained neglected. For this reason, the quantitative
energetical results of calculations at this level of theory concern-
ing the supramolecular assemblies of isatin and its derivatives are
not expressive for a deeper interpretation of the polymorphic
variations.
The parallel spatial alignment of the chromophoric parts of the
substituted isatins 3, the formation of supramolecular polar
strands, and the high molecular dipole moment of the isatin
headgroup might be technically applicable because of their
anisotropy, possibly already with such crystalline compounds
as 3, but particularly in derivatives which may form liquid
crystalline, i.e. fluid, phases. Respective works are ongoing and
will be reported elsewhere.
dNHÀO
dNÀO
dCOÀH
dC2ÀN
compd
(Å)
(Å)
(Å)
(Å)
3a
strand, X-ray
1.94
1.85
1.89
2.04
1.84
1.88
2.79
2.84
2.89
2.93
2.83
2.89
2.29
2.51
6.84
6.80
3.62
3.58
6.82
3.62
3a
strand, computed
dimer, computed
dimer, X-ray26
3a
isatin
isatin
isatin
strand, computed
2.54
dimer, computed
a dNH-O, distance between the hydrogen atom of the H-bond and the
acceptor oxygen; dNÀO, distance between the donor group nitrogen and
the acceptor oxygen of the next molecule; dCO-H, distance between the
3-carbonyl oxygen and the phenyl 6-hydrogen of the adjacent molecule;
d
C2ÀN, distance between C-2 and the nitrogen of the neighboring
molecule located at the same half side.
not considered, e.g. the dipolar interactions between adjacent strains or
dimers, van der Waals interactions, as well as any entropic influences or
crystal packing effects (e.g., minimization of excluded volume etc.).
On the other hand, the calculated strand of 3a, computed under periodic
boundary conditions, reproduces the structure found in the crystal quite
well; a collection of characteristic measures, comparing the DFT calcula-
tions with the crystal structures of 3a and isatin is compiled in Table 3.
Differences between the computed and the X-ray determined struc-
tures appear with respect to the second, weak C(7) hydrogen bond motif
in the strands of 3a, which is not described properly by the DFT
calculations. A second difference is that in the calculations the isatin
heads of adjacent molecules (dimers and strands) lie exactly in the same
plane, while in the crystal structures an offset occurs, leading to a little
“step” between the molecules.
A very good agreement was found regarding the out-of-plane twist of
the lateral phenyl groups of 3a, for which the angle is 38.4° in the
computed structure and, thus, only 1.7° smaller than the measured one.
At this stage of our study we concentrated on the supramolecular
organization with respect to the first dimension only. Interactions between
adjacent dimers or between adjacent strands have not yet been studied,
since conventional DFT is known to perform only poorly with respect to
weak intermolecular interactions, such as, for example, van der Waals or
πÀπ interactions.31,32 Therefore, the calculations presented here resemble
just a qualitative measure for possible supramolecular aggregates.
Regarding the computed structures, a clear difference between the liquid
crystalline alkoxyphenyl-substituted isatin derivatives10 and the alkylphenyl
derivatives of series 3is that, in the case of the alkoxyphenyl substituents, the
alkyloxy chain is situated in plane with the phenyl ring while, in the case of
the alkylphenyl derivatives, the alkyl chain is arranged nearly perpendicular
to the plane of the phenyl ring. These predilections for the orientation of the
alkyl- or alkyloxy-chain can also be one reason for the different behavior of
the two series with regard to their thermomesomorphism.
Concerning the melting process, it is reasonable to assume that the
weakest H-bond, i.e. the C(7) pattern, breaks first, which gives the
molecules a certain rotational freedom and opens the possibility of a
dynamic equilibrium between the (almost infinite) C(4) strand, shorter
but still linear fragments of it, cyclic structures, and the R22(8) dimers. All
these architectures differ in their degrees of freedom and, thus, in their
entropic situation, in which the dimers are most favored.
’ ASSOCIATED CONTENT
S
Supporting Information. Instrumentation, synthetic pro-
b
cedures and analytical data (refraction index, IR-, H-, 13C
1
NMR), crystal structure data including crystallographic informa-
tion files (CIF), and DFT-computed structures. This material is
’ AUTHOR INFORMATION
Corresponding Author
*E-mail: d.blunk@uni-koeln.de. Telephone: +49-221-470 5213.
Fax: +49-221-470 3064.
Present Addresses
‡Department of Chemistry and Biochemistry, 215 UCB, University
of Colorado, 80309 Boulder, CO, USA.
’ ACKNOWLEDGMENT
The generous provision of computing time at the Regional
Computing Centre RRZK, Cologne, Germany, and within the
D-GRID initiative is gratefully acknowledged. This work was
partly funded by the Federal Ministry of Education and Research
(BMBF) Project MoSGrid, reference no. 01IG09006A.
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’ CONCLUSION
The crystal architecture of the newly synthesized 5-(4-hex-
ylphenyl)isatin (3) reveals a number of important intermolecular
(6) Su, D.; Wang, X.; Simard, M.; Wuest, J. D. Supramol. Chem.
1995, 6, 171–178.
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dx.doi.org/10.1021/cg200700r |Cryst. Growth Des. 2011, 11, 3648–3652