Journal of Medicinal Chemistry
Article
20.59, 20.74, 20.97 (3 × CH3), 63.09 (CH2-5′), 70.67 (CH-4′), 73.32
(CH-3′), 80.74 (CH-2′), 87.08 (CH-1′), 132.57 (C-5), 143.79 (C-8),
151.44 (C-6), 151.87 (C-4), 152.54 (C-2), 169.56, 169.78, 170.48 (3
× CO). HRMS (ESI+) m/z calcd for C16H18ClN4O7 (M + H)+
413.0864, found 413.0859. Anal. Calcd for C16H17ClN4O7·0.6EtOAc:
C, 47.46; H, 4.71; N, 12.03. Found C, 47.84; H, 4.59; N, 11.89.
General Procedure for the Synthesis of Compounds 4−8. 6-
Chloro-9-(2,3,5-tri-O-acetyl-β-D-ribofuranosyl)-9H-purine (3) was dis-
solved in 10 mL of absolute EtOH, and then 1-substituted piperazines
and (Et)3N (3 equiv) were added. The mixture was refluxed for 3−8 h.
The reaction mixture was concentrated in vacuo, and the residue was
purified by column chromatography.
6-(4-Phenylpiperazine-1-yl)-9-(2,3,5-tri-O-acetyl-β-D-ribofurano-
syl)-9H-purine (4). The compound was prepared from (3) (174.4 mg,
0.4 mmol) and 1-phenylpiperazine (0.13 mL, 0.8 mmol) at reflux for 4
h according to the general procedure and was purified by column
chromatography (EtOAc−hexane, 1:1) to yield 4 (209 mg; 92%); mp
62−64 °C. 1H NMR (CDCl3) δ 2.08 (s, 3H, OAc), 2.14 (s, 6H, OAc),
3.32 (t, 4H, piperazine CH2), 4.34−4.50 (m, 7H, H-4′, H-5′, piperazine
CH2), 5.66 (t, J = 5.6 Hz, 1H, H-3′), 5.91 (t, J = 5.2 Hz, 1H, H-2′),
6.22 (d, J = 5.6 Hz, 1H, H-1′), 6.91 (t, 1H, J = 7.2 Hz, H-4 in phenyl),
6.98 (d, 2H, J = 7.6 Hz, H-2,6 in phenyl), 7.30 (t, 2H, J = 7.6 Hz, H-
3,5 in phenyl), 7.92 (s, 1H, H-8), 8.37 (s, 1H, H-2). 13C NMR
(CDCl3) δ 20.65, 20.78, 21.03 (3 × CH3), 45.24, 49.85 (CH2 in
piperazine), 63.41 (CH2-5′), 70.95 (CH-3′), 73.32 (CH-2′), 80.40
(CH-4′), 86.12 (CH-1′), 116.78, 120.63, 129.45 (C in phenyl), 136.71
(C-5), 150.99 (C-8), 151.37 (C-6), 152.98 (C-2), 154.01 (C-4),
169.63, 169.85, 170.57 (3 × CO). HRMS (ESI+) m/z calcd for
C26H31N6O7 (M + H)+ 539.2254, found 539.2253. Anal. Calcd for
C26H30N6O7·0.5H2O: C, 57.03; H, 5.70; N, 15.34. Found C, 57.35; H,
5.58; N, 14.97.
(3) (241.5 mg, 0.58 mmol) and 1-(3,4-dichloropheny)piperazine
(135.1 mg, 0.58 mmol) at reflux for 8 h according to the general
procedure and was purified by column chromatography (EtOAc−
1
hexane, 1:1) to yield 7 (166.2 mg; 46.69%); mp 67−69 °C. H NMR
(CDCl3) δ 2.08 (s, 3H, OAc), 2.15 (s, 6H, OAc), 3.29 (t, 4H,
piperazine CH2), 4.34−4.48 (m, 7H, H-4′, H-5′, piperazine CH2), 5.67
(t, J = 4.8 Hz, 1H, H-3′), 5.92 (t, J = 5.2 Hz, 1H, H-2′), 6.22 (d, J = 5.6
Hz, 1H, H-1′), 6.79 (dd, Jo = 8.8 Hz, Jm = 2.8 Hz, 1H, H-6 in phenyl),
7.0 (d, Jm = 2.8 Hz, 1H, H-2 in phenyl), 7.29 (d, Jo = 9.2 Hz, 1H, H-5
in phenyl), 7.93 (s, 1H, H-8), 8.37 (s, 1H, H-2). 13C NMR (CDCl3) δ
20.64, 20.77, 21.02 (3 × CH3), 44.94, 49.21 (CH2 in piperazine),
63.37 (CH2-5′), 70.91 (CH-3′), 73.33 (CH-2′), 80.39 (CH-4′), 86.23
(CH-1′), 115.92 (CH in phenyl), 117.86 (CH in phenyl), 120.66 (CH
in phenyl), 122.98 (C in phenyl), 130.76 (C in phenyl), 133.09 (C in
phenyl), 136.91 (C-5), 150.76 (C-8), 150.99 (C-6), 152.92 (C-2),
153.91 (C-4), 169.62, 169.83, 170.55 (3 × CO). HRMS (ESI+) m/z
calcd for C26H29Cl2N6O7 (M + H)+ 607.1475, found 607.1475. Anal.
Calcd for C26H28Cl2N6O7·0.2EtOAc: C, 51.50; H, 4.77; N, 13.44.
Found C, 51.43; H, 4.65; N, 13.08.
6-(4-(Diphenylmethyl)piperazine-1-yl)-9-(2,3,5-tri-O-acetyl-β-D-ri-
bofuranosyl)-9H-purine (8). The compound was prepared from (3)
(312 mg, 0.7 mmol) and 1-(diphenylmethyl)piperazine (190.9 mg, 0.7
mmol) at reflux for 5 h according to the general procedure and was
purified by column chromatography (EtOAc−hexane, 1:1) to yield 8
1
(166.8 mg; 35.1%); mp 81−83 °C. H NMR (CDCl3) δ 2.06 (s, 3H,
OAc), 2.12 (s, 3H, OAc), 2.13 (s, 3H, OAc), 2.52 (t, 4H, piperazine
CH2), 4.19−4.44 (m, 8H, CH, H-4′, H-5′, piperazine CH2), 5.63 (t, J =
4.8 Hz, 1H, H-3′), 5.87 (t, J = 5.2 Hz, 1H, H-2′), 6.20 (d, J = 5.2 Hz,
1H, H-1′), 7.19 (t, 2H, Jo = 7.6 Hz, H-4 in phenyl), 7.29 (t, 4H, Jo =
7.6 Hz, H-3,5 in phenyl), 7.44 (d, 4H, Jo = 7.2 Hz, H-2,6 in phenyl),
7.84 (s, 1H, H-8), 8.30 (s, 1H, H-2). 13C NMR (CDCl3) δ 20.65,
20.78, 21.02 (3 × CH3), 45.46 (CH2 in piperazine), 52.26 (CH2 in
piperazine), 63.39 (CH), 70.93 (CH2-5′), 73.30 (CH-3′), 76.35 (CH-
2′), 80.34 (CH-4′), 85.96 (CH-1′), 120.52 (CH in phenyl), 127.31
(CH in phenyl), 128.19 (CH in phenyl), 128.78 (C in phenyl), 136.32
(C-5), 142.47 (C-8), 150.88 (C-6), 152.99 (C-2), 154.03 (C-4),
169.61, 169.85, 170.57 (3 × CO). HRMS (ESI+) m/z calcd for
C33H37N6O7 (M + H)+ 629.2724, found 629.2719. Anal. Calcd for
C33H36N6O7·0.7H2O: C, 61.80; H, 5.87; N, 13.10. Found C, 61.57; H,
5.89; N, 13.07.
6-[4-(4-Fluorophenyl)piperazine-1-yl]-9-(2,3,5-tri-O-acetyl-β-D-ri-
bofuranosyl)-9H-purine (5). The compound was prepared from (3)
(140.1 mg, 0.3 mmol) and 1-(4-fluoropheny)piperazine (61.1 mg, 0.3
mmol) at reflux for 7 h according to the general procedure and was
purified by column chromatography (EtOAc−hexane, 1:1) to yield 5
1
(151 mg; 80.3%); mp 57−59 °C. H NMR (CDCl3) δ 2.08 (s, 3H,
OAc), 2.14 (s, 6H, OAc), 3.22 (t, 4H, piperazine CH2), 4.35−4.47 (m,
6H, H-4′, H-5′, piperazine CH2), 5.66 (t, J = 4.8 Hz, 1H, H-3′), 5.91 (t,
J = 5.2 Hz, 1H, H-2′), 6.22 (d, J = 5.6 Hz, 1H, H-1′), 6.91−7.02 (m,
4H, H-2,3,5,6 in phenyl), 7.92 (s, 1H, H-8), 8.37 (s, 1H, H-2). 13C
NMR (CDCl3) δ 20.64, 20.77, 21.02 (3 × CH3), 45.29, 50.88 (CH2 in
piperazine), 63.39 (CH2-5′), 70.92 (CH-3′), 73.32 (CH-2′), 80.39
(CH-4′), 86.16 (CH-1′), 115.77, 115.99, 118.67 (2), 120.63 (C in
phenyl), 136.75 (C-5), 148.02 (C-8), 150.99 (C-6), 152.95 (C-2),
153.98 (C-4), 169.62, 169.84, 170.56 (3 × CO). HRMS (ESI+) m/z
calcd for C26H30FN6O7 (M + H)+ 557.2160, found 557.2163. Anal.
Calcd for C26H29FN6O7·1.3EtOAc: C, 55.84; H, 5.91; N, 12.52. Found
C, 56.10; H, 5.87; N, 12.14.
General Procedure for the Deacetylation of the Protected
Nucleosides 9−13. The protected nucleosides (4−8) were dissolved
in 10 mL of absolute MeOH, and then NaOMe (30% in MeOH) (2
equiv) was added and stirred at room temparature for 1−12 h. The
reaction mixture was concentrated in vacuo. The residue was dissolved
with CH2Cl2:MeOH and purified by column chromatography.
6-(4-Phenylpiperazine-1-yl)-9-(β-D-ribofuranosyl)-9H-purine (9).
The compound was prepared from (4) (209.1 mg, 0.388 mmol) at
room temperature for 1 h according to general procedure and was
purified by column chromatography (EtOAc−hexane, 3:1) to yield 9
(27 mg; 16.3%); mp 99−100 °C. 1H NMR (DMSO-d6) δ 3.26 (t, 4H,
piperazine CH2), 3.53−3.70 and 3.65−3.73 (2m, 2H, CH2-5′), 3.96−
4.16 (m, 2H, H-2′,3′), 4.38 (br s, 4H, piperazine CH2), 4.58 (q, 1H, H-
4′), 5.21 (d, 1H, 3′-OH), 5.33 (t, 1H, 5′-OH), 5.48 (d, 1H, 2′-OH),
5.93 (d, 1H, 1′-H), 6.81 (t, 1H, J = 7.2 Hz, H-4 in phenyl), 7.0 (d, 2H,
J = 8.4 Hz, H-2,6 in phenyl), 7.24 (t, 2H, J = 8.4 Hz, H-3,5 in phenyl),
8.28 (s, 1H, H-8), 8.45 (s, 1H, H-2). 13C NMR (DMSO-d6) δ 49.15
(CH2 in piperazine), 62.14 (CH2-5′), 71.13 (CH-3′), 74.20 (CH-2′),
86.42 (CH-4′), 88.44 (CH-1′), 116.51, 119.97, 120.32, 129.65 (C in
phenyl), 139.66 (C-5), 150.99 (C-8), 151.61 (C-6), 152.47 (C-2),
153.81 (C-4). HRMS (ESI+) m/z calcd for C20H25N6O4 (M + H)+
413.1937, found 413.1938. Anal. Calcd for C20H24N6O4·1.2H2O: C,
55.34; H, 6.13; N, 19.36. Found C, 54.97; H, 6.07; N, 18.98.
6-[4-(4-Fluorophenyl)piperazine-1-yl]-9-(β-D-ribofuranosyl)-9H-
purine (10). The compound was prepared from (5) (151 mg, 0.27
mmol) at room temperature for 5 h according to the general
procedure and was purified by column chromatography (EtOAc−
hexane, 4:1 and then EtOAc) to yield 10 (42.4 mg; 36.5%); mp 189−
6-[4-(4-Trifluoromethylphenyl)piperazine-1-yl]-9-(2,3,5-tri-O-ace-
tyl-β-D-ribofuranosyl)-9H-purine (6). The compound was prepared
from (3) (92.8 mg, 0.23 mmol) and 1-(α,α,α-trifluoro-p-tolyl)-
piperazine (52.1 mg, 0.23 mmol) at reflux for 2.5 h according to the
general procedure and was purified by column chromatography
(EtOAc−hexane, 1:1) to yield 6 (106.4 mg; 78.23%); mp 68−70 °C.
1H NMR (DMSO-d6) δ 2.04 (d, 6H, OAc), 2.13 (s, 3H, OAc), 3.45
(br s, 4H, piperazine CH2), 4.25−4.43 (m, 7H, H-4′, H-5′, piperazine
CH2), 5.63 (t, 1H, H-3′), 6.03 (t, 1H, H-2′), 6.26 (d, J = 5.6 Hz, 1H,
H-1′), 6.13 (d, Jo = 8.8 Hz, 2H, H-2,6 in phenyl), 7.54 (d, Jo = 8.4 Hz,
2H, H-3,5 in phenyl), 8.33 (s, 1H, H-8), 8.46 (s, 1H, H-2). 13C NMR
(DMSO-d6) δ 20.87, 21.03, 21.17 (3 × CH3), 44.50, 47.61 (CH2 in
piperazine), 63.47 (CH2-5′), 70.73 (CH-3′), 72.58 (CH-2′), 80.11
(CH-4′), 86.24 (CH-1′), 115.05, 118.78 (q), 120.23, 124.29 (C in
phenyl), 126.87 (q) (CF3), 139.91 (C-5), 150.93 (C-8), 152.89 (C-6),
153.76 (C-2), 153.81 (C-4), 169.96, 170.14, 170.72 (3 × CO). HRMS
(ESI+) m/z calcd for C27H30F3N6O7 (M + H)+ 607.2128, found
607.2115. Anal. Calcd for C27H29F3N6O7·0.3EtOAc: C, 53.51; H, 5.00;
N, 13.28. Found C, 53.88; H, 5.04; N, 13.03.
1
191 °C. H NMR (DMSO-d6) δ 3.21 (t, 4H, piperazine CH2), 3.56
6-[4-(3,4-Dichlorophenyl)piperazine-1-yl]-9-(2,3,5-tri-O-acetyl-β-
D-ribofuranosyl)-9H-purine (7). The compound was prepared from
and 3.68 (2 × dd, 2H, CH2-5′), 3.97 (q, 1H, H-4′), 4.16 (t, 1H, H-2′),
3063
dx.doi.org/10.1021/jm3001532 | J. Med. Chem. 2012, 55, 3058−3065