J. Lewkowski et al. / Tetrahedron: Asymmetry 23 (2012) 482–488
487
(m, PhH, 2H); 7.35–7.33 (m, PhH, 4H); 7.28–7.23 (m, PhH, 4H);
4.4. Crystal structure determination
Id
4.75–4.72 and 4.69–4.61 (2m, POCHðCH3Þ2 , 2H); 4.56–4.46 and
4.44–4.40 (2m, POCHðCH3ÞIId, 2H); 4.13 (2d, JPH = 21.0 Hz, CHP,
The crystallographic measurements for 4b and 4c were performed
2
2
2H); 4.06 (2d, JPH = 20.4 Hz, CHP, 2H); 2.03–2.01 (m, CHc-hex
,
on a
j-geometry Xcalibur PX four-circle diffractometer with graphite-
2
2
4H); 1.60–1.58 (m, NCHc-hex, 2H); 1.32–1.23 (2m, POCH(CH3)2,
3ꢃ6H); 1.08–1.06 (2m, POCH(CH3)2, 1ꢃ6H); 1.02–0.98 (m,
monochromatized Mo K
a
radiation ( and scans). Data were cor-
x
u
rected for Lorentz and polarization effects. Data collection, cell refine-
ment, and data reduction and analysis were carried out with the
Xcalibur PX software, CRYSALIS CCD, and CRYSALIS RED, resp.16 Analytical
absorption corrections were applied to the data with the use of CRY-
SALIS RED. The structures were solved by direct methods with the SHEL-
XS-97 program,17 and refined using SHELXL-9717 with anisotropic
thermal parameters for non-H-atoms (except for low-occupied posi-
tionsofdisordered atomsin4c). The Hatoms were found indifference
Fourier maps. In the final refinement cycles, all C-bonded H atoms
were treated as riding atoms in geometrically optimized positions,
with C–H = 0.95–1.00 Å, and with Uiso(H) = 1.2Ueq(CH,CH2) or
1.5Ueq(CH3). N-bonded H atoms in both 4b and 4c were refined iso-
tropically. H atoms from fully occupied water molecules in 4c were
refined with Uiso(H) = 1.5Ueq(O). Those from partially occupied water
molecules were not found in the difference Fourier maps.
The asymmetric unit of crystal 4cꢀH2O contains two crystallo-
graphically independent molecules of 4c (A and B shown in Fig. 2)
and two water molecules. The highest peak in difference Fourier
map was included into the final model and treated as 4% of water
O atom. One of diisopropylphosphonate groups in molecule B is dis-
ordered and has both isopropoxyl groups at two positions (with
s.o.f. = 0.77(1) and 0.23(1)). Therefore, in the final model, some
geometrical restraints (SAME instructions in SHELXL-9717), and con-
straints on the fractional coordinates and anisotropic displacement
parameters (EXYZ and EADP instructions) were applied to this
disordered region. The figures showing the molecular and crystal
structures of 4b and 4c were made using the Diamond program.18
Crystallographic data for the structural analysis have been
deposited with the Cambridge Crystallographic Data Center [ref.
CCDC 856983 and 856984]. These data can be obtained free of
CHc2-hex
, ,
2H); 0.85–0.80 (m, CHc2-hex 2H). 31P NMR (CDCl3,
243 MHz): d 22.73, 22.46.
4.3.4. Tetrabenzyl (R,R)-1,2–cyclohexylenediamino-di-
phenylmethylphosphonate 4d
The post-reaction mixture was dissolved in methylene chloride.
Next, elemental iodide was added in small portions and if the solu-
tion was discolored within 10 min, further portions of iodine were
added. If after the addition, the mixture remained brown, it was
stirred for another 10 min with heating on a water bath. The
mixture was then washed once with 50 ml of saturated aqueous
sodium thiosulfate and 5 times with 50 ml of saturated aqueous
sodium bicarbonate. The organic layer was separated and dried
over sodium sulfate. The solvent was removed in vacuo. The crude
product obtained was purified by chromatography on silica gel
using Et2O/n-hexane (3:1) as a mobile phase. Elemental analysis:
Calcd for C48H52N2O6P2: C, 70.75; H, 6.43; N, 3.44. Found: C,
70.67; H, 6.66; N, 3.56. Asterisk denotes predominant diastereoiso-
mer; 1H NMR (CDCl3, 200 MHz): d 7.50–7.49 (m, PhH, 4H); 7.31–
7.21 (m, PhH, 22H); 7.15–7.10 (m, PhH, 4H); 5.08–4.97 (m,
2
POCH2Ph, 4H); 4.90 and 4.71 (part of AMX system, JHH = 12.0 Hz,
3JPH = 8.4 and 8.2 Hz, POCH2Ph); 4.95⁄ and 4.79⁄ (part of AMX sys-
2
3
tem, JHH = 12.6 Hz, JPH = 8.4 and 7.8 Hz, POCH2Ph); 4.82 and 4.63
2
3
(part of AMX system, JHH = 12.0 Hz, JPH = 8.4 and 7.2 Hz,
POCH2Ph); 4.28 (d, 2JPH = 20.4 Hz, CHP, 2H); 4.21⁄ (d, 2JPH = 20.4 Hz,
CHP, 2H); 4.10 (d, 2JPH = 19.8 Hz, CHP, 2H); 2.49–2.46 (m, NCHc-hex
,
2H); 2.42–2.39 (m, NCHc-hex, 2H); 2.14–2.11⁄ (m, NCHc-hex, 2H);
2.02–2.00⁄ (m, CH2c-hex, 2H); 1.92–1.90⁄ (m, CHc2-hex, 2H); 1.64–
1.62 (m, CH2c-hex, 2ꢃ2H); 1.53–1.51⁄ (m, CHc2-hex, 2H); 1.47–1.43
(m, CHc2-hex, 2ꢃ2H); 1.09–0.97 (m, CHc2-hex, 2ꢃ2H); 0.95–0.91⁄ (m,
CHc2-hex, 2H); 0.67–0.66 (m, CHc2-hex
,
2ꢃ2H). 31P NMR (CDCl3,
81 MHz): d 25.03, 24.97, 24.77⁄ (2:2:10). IR (KBr): 3451 (NH);
3030, 2927 (C–Harom); 1600, 1496, 1455 (C@Carom); 1242 (P@O);
1105 (P–O); 1080. ESI-MS: m/z = 837.7 [M+Na]+.
Crystal data for 4b. C28H44N2O6P2, M = 566.59, colorless
needlelike block, crystal dimensions: 0.40 ꢃ 0.20 ꢃ 0.13 mm3;
orthorhombic, space group P212121; a = 8.679(2), b = 18.219(4),
c = 19.013(4) Å; V = 3006.4(11) Å3; T = 100(2) K; Z = 4; qcalc
=
4.3.5. Tetraallyl (R,R)-1,2–cyclohexylenediamino-di-
phenylmethylphosphonate 4e
1.252 g cmꢂ3
1216; reflections collected = 27716; reflections independent =
12287 [Rint = 0.028]; reflections observed = 9405 [I > 2 (I)]; h range
; l a, k = 0.71073 Å); F(000) =
= 0.19 mmꢂ1 (for Mo K
A post-reaction mixture was purified by chromatography, using
Et2O/hexane 3:1 as an eluent. Fractions containing the product
were merged and solvents were removed in vacuo. Elemental
analysis: Calcd for C32H44N2O6P2: C, 62.53; H, 7.22; N, 4.56. Found:
C, 62.38; 7.23; N, 4.32. Asterisk denotes predominant diastereoiso-
mer; 1H NMR (CDCl3, 200 MHz): d 7.49–7.48 (m, PhH, 4H);
7.38–7.35 (m, PhH, 4H); 7.31–7.28 (m, PhH, 2H); 6.01–5.93 (m,
POCH2CH@CH2, 2H); 5.88 (ddt, 3JHH = 5.4, 10.8, 17.4 Hz,
POCH2CH@CH2, 2H); 5.81⁄ (ddt, 3JHH = 5.4, 10.8, 17.4 Hz,
POCH2CH@CH2, 2H); 5.68–5.62 (m, POCH2CH@CH2, 2H); 5.39–
r
2.48–38.57°; h, k, l range: ꢂ13 6 h 6 12, ꢂ27 6 k 6 26, -32 6
l 6 23; full-matrix least-squares on F2; parameters = 351;
restraints = 0; R1 = 0.040; wR2 = 0.084 [F2 > 2 (F2)]; GooF = S =
r
1.01; largest difference in peak and hole,
Dqmax and Dqmin = 0.53
and ꢂ0.23 e Åꢂ3; Flack parameter = ꢂ0.02(4).
Crystal data for 4cꢀH2O. C32H52N2O6P2ꢀH2O, M = 641.15, colorless
block, crystal dimensions: 0.48 ꢃ 0.41 ꢃ 0.27 mm3; orthorhombic,
space group P212121; a = 14.340(4), b = 19.109(4), c = 26.148(6) Å;
V = 7165(3) Å3; T = 85(2) K; Z = 8;
q
calc = 1.189 g cmꢂ3
;
l =
3
5.26 (m, POCH2CH@CH2, 8H); 5.26⁄ (ddt, JHH = 1.2, 1.8, 17.4 Hz,
0.17 mmꢂ1 (for Mo K
lected = 41667; reflections independent = 20404 [Rint = 0.030]; reflec-
tions observed = 16815 [I > 2 (I)]; h range 2.56–30.06°; h, k, l range:
a, k = 0.71073 Å); F(000) = 2770; reflections col-
POCH2CH@CH2, 4H); 5.22⁄ (ddt, 3JHH = 1.2, 1.8, 17.4 Hz, POCH2CH@
3
CH2, 4H); 5.17 (ddt, JHH = 1.2, 1.8, 10.8 Hz, POCH2CH=CH2, 2H);
r
3
5.14⁄ (ddt, JHH = 1.2, 1.8, 10.8 Hz, POCH2CH=@CH2, 2H); 4.62–
ꢂ19 6 h 6 17, -26 6 k 6 26, ꢂ27 6 l 6 35; full-matrix least-squares
4.60 (m, POCH2CH@CH2, 8H); 4.56–4.55 (m, POCH2CH@CH2, 8H);
4.49–4.47⁄ (m, POCH2CH@CH2, 6H); 4.37–4.30⁄ (m, POCH2CH@CH2,
2H); 4.26–4.22 (m, CHP, 2H); 2.45 (large s, NH, 2H); 2.06–2.00⁄
on F2; parameters = 837; restraints = 66; R1 = 0.038; wR2 = 0.083 [F2
>2
and
r
(F2)]; GooF = S = 1.03; largest difference in peak and hole,
D
qmax
Dq
min = 0.34 and ꢂ0.32 e Åꢂ3; Flack parameter = 0.01(3).
ðm;CHc2ꢂhex; 4HÞ; 1:73 ꢂ 1:72ðm;CHc2ꢂhex; 4HÞ; 1.60–1.59⁄ ðm;CHc2-hex
;
2HÞ; 1.54–1.14 ðm;CHc2-hex; 12HÞ; 1.03–1.00⁄ ðm;CHc2-hex; 2HÞ; 0.94–
0.86 ðm;CH2c-hex; 4HÞ; 0.84–0.82⁄ ðm;CH2c-hex; 2HÞ. 31P NMR (CDCl3,
81 MHz): d 24.65, 24.59, 24.46⁄ (9:9:100). IR (KBr): 3466 (NH);
3026, 2928 (C–Harom); 1648 (C@C); 1601, 1494, 1455 (C@Carom);
1242 (P@O); 1100 (P-O); 1023. ESI-MS: m/z = 637.4 [M+Na]+.
Acknowledgements
Paweł Tokarz is a participant in the project entitled ‘Doktor-
anci—Regionalna Inwestycja w Młodych naukowców—Akronim
D-RIM’, which is co-financed by the EU from the European Social