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G. Grue-Sørensen et al. / Bioorg. Med. Chem. Lett. 24 (2014) 54–60
H
O
O
H
OH
O
O
O
H
a, b,c
d
O
O
O
Cl
O
HO
O
H
O
H
O
H
O
H
e
H
f
O
H
HO
O
H O
O
HO
O
HO
HO
O
OH
32
Scheme 3. Synthesis of salicylate 32. Reagents and conditions: (a) allyl bromide (3 equiv), K2CO3, acetone, 90 °C (pressure tube), 3 days; (b) NaOH (2.3 equiv), MeOH/H2O
(3:1), 100 °C (pressure tube), 5 h, 80 °C, 14 h; (c) SOCl2, reflux, 1 h; (d) acyl chloride to ingenol 5,20-acetonide 7 (2:1), DMAP, DIPEA (2 equiv), MeCN, 100 °C (pressure tube),
1 h; (e) Pd(Ph3P)4 (0.034 equiv), Et2NH, dioxane, rt, 1 h; (f) aq HCl/MeOH, rt.
benzyl ether 9 by reacting the 5,20-acetonide 7 with benzyl bro-
mide and cesium carbonate as base catalyst to provide
A series of mono-substituted benzoates (Table 1) showed a
clear trend that more bulkiness in the ortho-position favored sta-
bility. 3-Ingenol esters of ortho-mono-substituted benzoic acids
were more stable than the unsubstituted benzoate 10 with recov-
eries in our standard test up to 80%. The lipophilic ingenol 3-o-
hexadecanylamino-benzoate 23 had a relatively high recovery of
90%, but this measurement could not be carried out under our
usual conditions due to the very poor solubility of the substance
in aqueous buffer. We assume that highly lipophilic ingenol 3-acy-
lates will be more stable towards acyl migration because the lipo-
philic acyl group will shield the ester group from the polar catalytic
action of water and its dissociation products (H+ and OHÀ) (cf. Ref.
15). As stated above, the influence of acidity of the corresponding
acid is subordinate to steric hindrance as the ortho-methoxy ben-
zoic acid (pKa 4.1) ester 14 is considerably more stable than ben-
zoic acid (pKa 4.2) ester 10 even if the ortho bromo benzoic acid
(pKa 2.9) ester 11 has intermediate stability (Table 1). Hence, ki-
netic data are likely to reflect the migration ability better.
We explored a diverse set of ortho-substituted benzoates 11–23
containing ‘neutral’ (Me, i-Pr, Ph), electron-withdrawing (Br) and
electron-donating groups of highly variable size (MeO, i-PrO, and
H2N, MeHN versus PhO, PhNH, BnHN, C12H25HN and C16H33HN).
The anilinic compounds are also capable of forming internal hydro-
gen bonds with the ester carbonyl group which will influence the
orientation of the aniline substituent and favoring a coplanar con-
formation and affecting the ability of the carbonyl (benzoate
group) to engage in the postulated interaction in PKCd. Notably,
the potency of oxidative burst activation did not change signifi-
cantly within the series of the ortho-mono-substituted derivatives
compared to the potency of ingenol 3-benzoate 10 (Table 1). Only
ingenol 3-o-methoxy-benzoate (14) appeared to be somewhat less
potent in the cytokine release assay, contrasting to the slightly
more bulky o-isopropoxy derivative 15 with a 10-fold higher po-
tency. The methoxy derivative also displayed the lowest PKCd acti-
vation potency (25.7 nM) of the investigated ortho-mono-
substituted benzoates (Table 1). Otherwise, most of the o-mono-
substituted benzoates tested were superior, i.e., 11, 13, 15–21, to
ingenol mebutate. In terms of chemical stability, several com-
pounds had somewhat improved stability over the angelate 1, with
the phenyl 16 and phenoxy 17 being the most stable with ꢀ80%
recovered (Table 1). The most lipophilic aniline 23 had good stabil-
ity, but was an outlier with poor potency in the oxidative burst and
cytokine release assays. Poor solubility of this compound made
determination of necrotic potential impossible.
8
(Scheme 1). The usual deprotection protocol produced the benzyl
ether 9 in an overall yield of 40% from 7. As expected, it showed
complete chemical stability during the screening conditions and
it displayed very low activity in the oxidative burst and IL8 release
assays (Table 1). In accordance with these observations no activa-
tion of PKCd was observed even at a concentration of 10 lM of 9 in
contrast to the benzoate ester 10 having an EC50 of 6.1 nM (Table 1),
which supports the reported binding predictions and the impor-
tance of the ester carbonyl for activity.
To further investigate the binding of the 3-benzoate 10 to PKCd
we performed 2 ns molecular dynamics (MD) calculations of both
the 3-benzoate and the 3-benzyl ether.19,21 The MD starting con-
formation of 3-benzoate was obtained by docking the ligand into
the crystal structure of the C1 domain of PKCd (1PTR)20,21 and it
is in excellent agreement with the binding model proposed by
Pak et al.17 Thus, hydrogen bonds were observed between the hy-
droxyl groups of the ligand and Thr12, Leu21, and Gly23 in PKCd
and of particular interest between the ester carbonyl in 10 and
the Gly23 NH. Furthermore, our docking model suggests a hydro-
phobic interaction between the side chain of Leu24 and the aro-
matic ring of the benzoate group (Fig. 2).
Our docking model did not indicate an interaction between the
benzoate group and the side chain of Trp22 (Fig. 2a). However, an
analysis of the MD trajectories strongly suggests that a rotation of
the Trp22 side chain allows the aromatic ring of the benzoate
group to form a stable hydrophobic sandwich with the side chains
of Trp22 and Leu24 (Fig. 2b). It is also noteworthy, that the car-
bonyl and the phenyl ring of the benzoate is in a coplanar orienta-
tion in this hydrophobic sandwich enabling favorable
with the indole ring of Trp22 (Fig. 2c).
p–p stacking
Similarly, we performed a MD calculation for the benzyl ether 9,
using the benzoate 10 starting conformation but with the carbonyl
reduced to a methylene.19 Also in the case of the benzyl ether 9,
Trp22 rotates to form a hydrophobic sandwich, but the p–p stack-
ing is not as stable as observed for the benzoate as the spread in
torsion angles of the phenyl ring is in the range of ꢀ70° compared
to a more narrow span of ꢀ40° for the ester 10 (Fig. 3). The major
difference between the compounds is the lack of a hydrogen bond
to Gly23 NH supporting the importance of the ester carbonyl for
activity. Thus, we concentrated on the benzoate esters even if sta-
bility needed to be substantially improved. It can be noted that the
benzyl ether 9 showed a reasonable necrotic effect, which indicates
different mode of actions for immunostimulatory and necrotic
effects.
We then added extra steric hindrance (cf. Ref. 22) to the benzo-
ates with the introduction of two flanking ortho-substituents.