R. Gao et al. / European Journal of Medicinal Chemistry 62 (2013) 597e604
603
yl)benzenesulfonamide (142 mg, 0.5 mmol) and potassium car-
4.2.17. 2-Methyl-4-(4-((4-sulfamoylphenyl)amino)phthalazin-1-yl)
benzenesulfonamide (28)
bonate (138 mg, 1.0 mmol) in DME (20 mL), water (10 mL) was
degassed with Ar for 10 min. Then tetrakis(triphenylphosphine)
palladium (30 mg, 0.025 mmol) was added. The mixture was
heated to reflux for 12 h under Ar atmosphere. Subsequently, the
mixture was cooled to rt and diluted with dichloromethane and
washed with brine. The organic layer was dried over anhydrous
Na2SO4, filtered and concentrated under vacuum. The residue was
purified by flash chromatography on silica gel eluted with 0e5%
methanol in dichloromethane to give the title compound as
a brown solid. Yield: 73%, m.p. 266.1e267.2 ꢁC. 1H NMR (400 MHz,
According to the general procedure, compound 3 was treated
with compound 10 and reacted for 24 h. Then the crude product
was purified by flash chromatography on silica gel (eluted with 0e
1% methanol in CH2Cl2) to provide compound 28. Yellow solid,
yield: 46%, m.p. >300 ꢁC. 1H NMR (400 MHz, DMSO-d6)
d (ppm):
8.46 (d, J ¼ 7.2 Hz, 1H), 8.03 (d, J ¼ 7.6 Hz, 1H), 7.99e7.96 (m, 1H),
7.70 (d, J ¼ 8.0, 4H), 7.64 (s, 1H) 7.54 (s, 2H), 7.56 (s, 1H), 6.61 (d,
J ¼ 9.6 Hz, 2H), 5.91 (s, 2H), 2.68 (s, 3H). HRMS (ESI): C21H20N5O4S2
calc. 470.0957, found 470.0956.
DMSO-d6)
d
(ppm): 9.02 (s, 1H), 8.63 (d, J ¼ 8.4 Hz, 1H), 8.12 (s,
1H), 7.94e8.02 (m, 2H), 7.90 (t, J ¼ 8.0 Hz, 1H), 7.83 (d, J ¼ 8.0 Hz,
1H), 7.76 (t, J ¼ 7.6 Hz, 1H), 7.49 (s, 1H), 7.47 (s, 2H), 6.62 (d,
J ¼ 8.4 Hz, 2H), 4.92 (s, 2H). 13C NMR (100 MHz, DMSO-d6):
4.3. Biology assay
An Applied Photophysics stopped-flow instrument was used to
test the CA-catalyzed CO2 hydration activity. Phenol red (at a con-
centration of 0.2 mM) has been used as the indicator, working at the
absorbance maximum of 557 nm. The 10e20 mM HEPES (pH 7.5) or
Tris (pH 8.3) buffer solutions with 20 mM Na2SO4 or 20 mM NaClO4
was used as solvents. The rate of the CA-catalyzed CO2 hydration
reaction for a period of 10e100 s was monitored. The CO2 con-
centrations ranged from 1.7 to 17 mM for the determination of the
kinetic parameters and inhibition constants. For each inhibitor, at
least six traces of the initial 5e10% of the reactions have been used
for determining the initial rates. The uncatalyzed rates were
determined in the same manner and subtracted from the total
observed rates. Stock solutions of inhibitor (10 mM) were prepared
in distillededeionized water, and diluted up to 0.01 nM were per-
formed thereafter with distillededeionized water. Inhibitor and
enzyme solutions were preincubated together for 15 min at rt prior
to the assay study, in order to allow for the formation of the EeI
complex. The half maximal inhibitory concentration (IC50) was
obtained by nonlinear least-squares methods using PRISM 3 as
reported earlier and represented the mean from at least three dif-
ferent determinations. CA isoforms were recombinant ones
obtained as described previously [29,30].
d
152.92, 151.32, 145.34, 144.85, 138.20, 133.31, 132.59, 132.00,
129.64, 129.53, 127.10, 125.90, 125.84, 125.53, 124.45, 123.22,
118.54, 114.22. HRMS (ESI): C20H18N5O2S calc. 392.1181, found
392.1177.
4.2.14. 3-(4-((4-(tert-Butyl)phenyl)amino)phthalazin-1-yl)
benzenesulfonamide (25)
According to the general procedure, compound 13 was treated
with 3-(4,4,5,5-tetramethyl-1,3,2-dioxaborolan-2-yl)benzenesulfo-
namide and reacted for 24 h. Then the crude product was purified by
flash chromatography on silica gel (eluted with 0e1% methanol in
CH2Cl2) to provide compound 25. Yellow solid, yield: 15%, m.p.
>300 ꢁC. 1H NMR (400 MHz, DMSO-d6)
d (ppm): 9.43 (s,1H), 8.80 (d,
J ¼ 8.4 Hz,1H), 8.14 (s,1H), 8.05 (t, J ¼ 7.2 Hz,1H), 7.95e8.00 (m, 2H),
7.89 (d, J ¼ 8.8 Hz, 2H), 7.78 (t, J ¼ 8.0 Hz, 1H), 7.52 (s, 2H), 7.49 (d,
J¼ 7.2Hz, 2H), 3.99 (s, 2H),1.07(s, 9H).13CNMR(100MHz, DMSO-d6):
d
152.70,152.30,145.24,144.90,138.37,137.95,133.37,132.87,132.20,
129.67, 127.16, 126.08, 125.92, 125.67, 125.43, 123.67, 121.57, 118.81,
34.48, 31.78. HRMS (ESI): C24H25N4O2S calc. 433.1698, found
433.1703.
4.2.15. 3-(4-((4-Sulfamoylphenyl)amino)phthalazin-1-yl)
benzenesulfonamide (26)
Initial rates of 4-nitrophenyl acetate hydrolysis catalyzed by
different CA isozymes were monitored spectrophotometrically, at
400 nm, with a Cary 3 instrument interfaced with an IBM-
compatible PC. Solutions of substrate were prepared in anhydrous
ethanol; the substrate concentrations were 1 mM at 25 ꢁC. A molar
absorption coefficient of 400 Mꢀ1 cmꢀ1 was used for the 4-nitro-
phenolate formed byhydrolysis in the conditions of the experiments
(pH 7.5). Nonenzymatic hydrolysis rates were subtracted from the
observed rates. The experiments were repeated three times at each
inhibitor concentration. Stock solutions of the inhibitor (50 mM)
were prepared (which was not inhibitory at these concentrations)
and diluted up to 0.5 nM with DMSO. At least 8 different inhibitor
According to the general procedure, compound 14 was trea-
ted with 3-(4,4,5,5-tetramethyl-1,3,2-dioxaborolan-2-yl)benze-
nesulfonamide and reacted for 12 h. Then the crude product was
purified by flash chromatography on silica gel (eluted with 0e1%
methanol in CH2Cl2) to provide compound 26. Yellow solid,
yield: 39%. 1H NMR (400 MHz, DMSO-d6)
d (ppm): 8.47 (d,
J ¼ 7.2 Hz, 1H), 8.07 (s, 1H), 8.03 (d, J ¼ 8.0 Hz, 1H), 8.00e7.96
(m, 1H), 7.88 (d, J ¼ 8.0 Hz, 1H), 7.80 (t, J ¼ 7.6 Hz, 1H), 7.73e
7.67 (m, 3H), 7.52 (s, 1H), 6.61 (d, J ¼ 8.8 Hz, 2H), 5.92
(s, 2H). HRMS (ESI): C20H17N5O4NaS2 calc. 478.0620, found
478.0624.
concentrations have been used, ranging from 5 mM, 0.5 mM, 50
mM,
5
m
M, 0.5 M, 50 nM, 5 nM, 0.5 nM. Inhibitor and enzyme solutions
m
4.2.16. 2-Methyl-5-(4-((4-sulfamoylphenyl)amino)phthalazin-1-yl)
benzenesulfonamide (27)
were preincubated together for 15 min at rt prior to the assay study,
to allow for the formation of the EeI complex. Enzyme concentra-
tions were 1 ng/L for CA II, 50 ng/L for CA I [31].
According to the general procedure, compound 3 was treated
with compound 11 and reacted for 24 h. Then the crude product
was purified by flash chromatography on silica gel (eluted with 0e
1% methanol in CH2Cl2) to provide compound 27. Yellow solid,
yield: 53%, m.p. 238.4e239.9 ꢁC. 1H NMR (400 MHz, DMSO-d6)
4.4. Molecular modeling
The lead inhibitor, compound 26, was obtained through virtual
screening in our previous work (unpublished). The protein struc-
tures of CA IX, and CA II were derived from PDB, with the PDB
entries 3IAI and 3R16, respectively. Protein preparation was per-
formed to optimize the protein structures using Glide module in
Maestro 9.0 (Schrödinger Inc), and all the water molecules were
removed. The grid-enclosing box was formed based on the ligand in
the complex structure, and other parameters were set up by
default. These structures of two compounds were’ drawn using the
d
(ppm): 12.87 (s, 1H), 8.46 (d, J ¼ 7.2 Hz, 1H), 8.09 (d, J ¼ 1.6 Hz,
1H), 7.98e7.95 (m, 1H), 7.76 (dd, J1 ¼ 1.6, J2 ¼ 7.6 Hz, 1H), 7.70 (d,
J ¼ 8.4 Hz, 2H), 7.60 (d, J ¼ 7.6 Hz, 1H), 7.54 (s, 2H), 6.61 (d,
J ¼ 9.2 Hz, 2H), 5.92 (s, 2H), 5.76 (s, 2H), 2.71 (s, 3H). 13C NMR
(100 MHz, DMSO-d6):
d 153.00, 149.51, 142.93, 137.82, 135.16,
133.38, 133.17, 133.07, 132.38, 128.61, 128.38, 127.42, 126.90,
126.82, 112.95, 20.22. HRMS (ESI): C21H20N5O4S2 calc. 470.0957,
found 470.0959.