Journal of Medicinal Chemistry
Article
using UV light and/or by charring with a molybdate solution (a 0.02
M solution of ammonium cerium sulfate dihydrate and ammonium
molybdate tetrahydrate in aqueous 10% H2SO4) with heating to 150
°C for 5 min. MPLC separations were carried out on a CombiFlash Rf
from Teledyne Isco equipped with RP-18 reversed-phase flash
columns. LC-MS separations were done on a Waters system equipped
with a Waters SunFire C18 OBD (5 μm, 19 mm × 150 mm) column,
sample manager 2767, pump 2525, PDA 2525, and micromass ZQ
mass spectrometer.
powder after a final lyophilization from H2O/dioxane. [α]D +74.5 (c
1.00, MeOH). 1H NMR (500 MHz, CD3OD): δ 2.47 (s, 3H, NCH3),
2.76 (m, 4H, 2 CH2), 3.66 (ddd, J = 2.1, 5.6, 9.8 Hz, 1H, H-5), 3.71
(dd, J = 5.6, 11.8 Hz, 2H, H-6a), 3.74 (t, J = 9.7 Hz, 1H, H-4), 3.79
(dd, J = 2.1, 11.8 Hz, 2H, H-6b), 3.88 (m, 4H, 2 CH2), 3.96 (dd, J =
3.4, 9.4 Hz, 1H, H-3), 4.09 (dd, J = 1.8, 3.3 Hz, 1H, H-2), 5.48 (d, J =
1.4 Hz, 1H, H-1), 7.15 (dd, J = 2.7, 8.9 Hz, 1H, C6H3), 7.33 (d, J = 8.9
Hz, 1H, C6H3), 7.35 (d, J = 2.7 Hz, 1H, C6H3). 13C NMR (125 MHz,
CD3OD): δ 45.4 (NCH3), 47.4 (2C, 2 CH2), 55.0 (2C, 2 CH2), 62.7
(C-6), 68.2 (C-4), 71.8 (C-2), 72.3 (C-3), 76.0 (C-5), 101.2 (C-1),
119.0, 121.6, 123.8, 125.0, 135.1, 150.2 (C6H3), 164.9, 169.2 (CC),
183.3, 185.9 (2 CO). HR-MS: m/z calcd for C21H26ClN2NaO8 [M +
Na]+, 506.1306; found, 506.1303.
Expression and Purification of DC-SIGN CRD-Fc and DC-
SIGNR CRD-Fc. Plasmids containing the full-length cDNA of DC-
SIGN and DC-SIGNR were kindly provided by Daniel A. Mitchell,
Clinical Sciences Research Institute, Warwick Medical School
(Coventry, United Kingdom). Standard molecular techniques32 were
used for the cloning of the CRD of DC-SIGN (DC-SIGN CRD; aa
residues 250−404, GenBank accession no. M98457) and DC-SIGNR
(DC-SIGNR CRD; aa residue 262−398, GenBank accession no.
Q9H2x3). The DC-SIGN/DC-SIGNR CRD encoding inserts were
amplified by PCR using primers containing the restriction sites EcoRI
and NcoI, respectively. The insert was ligated into the corresponding
cloning site of the pFUSE-hIgG2-Fc2 expression vector (Invivogen,
Toulouse, France). The constructs were amplified in chemocompetent
DH5α E. coli (Novagen, Lucerne, Switzerland), and their correctness
was confirmed by DNA sequencing.
Compound Purity. The test compounds 1−3 and 5 were purified
by reversed-phase chromatography (RP-18 column, gradient of MeOH
in H2O, compound 1−35d,25) or chromatography on silica (DCM/
MeOH/H2O, compound 55g) followed by Bio-Gel P2 (exclusion limit
1800 Da, Bio-Rad Laboratories) size exclusion chromatography
(elution with water containing up to 20% MeOH at 0.25 mL/min)
prior to HPLC, HR-MS, NMR, and activity testing. Compound 4 was
purified by preparative LC-MS (Waters SunFire C18 OBD column,
H2O/MeCN + 0.2% HCO2H). The purity of all test compounds was
determined by NMR and HPLC to be ≥95% [method A (compounds
2, 3, and 5): Beckman Coulter Gold, consisting of pump 126, DAD
168 (190−410 nm), and autosampler 508; column, Waters Atlantis T3
(3 μm, 2.1 mm × 100 mm); A, H2O + 0.1% TFA; B, MeCN + 0.1%
TFA; detection, 254 or 270 nm; gradient, 5% B → 95% B (22 min);
and flow rate, 0.5 mL/min. Method B (compounds 1 and 4): Agilent
1100/1200 with UV detector (190−410 nm) and ELSD; column,
Waters Atlantis T3 (3 μm, 2.1 mm × 100 mm); A, H2O + 0.1% TFA;
B, H2O/MeCN (90:10) + 0.1% TFA; gradient, 5% B (1 min), 5% B →
70% B (15 min), 70% B (1 min), 70% B → 5% B (3 min); flow rate,
1
CHO-K1 cells (American Type Culture Collection No. CCL-61)
were cultivated in Ham's Nutrient Mixture F-12 supplemented with 2
mM L-glutamate (Invitrogen, Paisley, United Kingdom), 10% fetal calf
serum (FCS, Invitrogen), 100 U/mL penicillin, and 100 μg/mL
streptomycin (both Sigma-Aldrich, Basel, Switzerland). The CHO-K1
cells were transfected with the DC-SIGN CRD or DC-SIGNR CRD
expression vector using the FuGENE HD transfection reagent (Roche
Applied Science, Rotkreuz, Switzerland). Stably transfected CHO-K1
cells were selected by treatment with Zeocin (0.5 μg/mL, Invitrogen),
and single clones were obtained by limiting dilution. For protein
production, the cells were cultivated as described above, and the
culture medium containing the secreted DC-SIGN CRD-Fc and DC-
SIGN CRD-Fc chimera was harvested weekly. Purification of the
recombinant protein was achieved by applying conditioned medium
on a protein A-sepharose column (BioVision, Mountain View, CA)
attached to a fast protein liquid chromatography apparatus [BioLogic
(FPLC) system, BioRad, Reinach BL, Switzerland], with loading buffer
I [20 mM Tris/HCl, pH 7.6, 150 mM NaCl, and 0.05% (v/v) Tween-
20]. The protein was eluted with elution buffer I (0.5 M acetic acid/
ammonium acetate, pH 3.4). The collected protein was further
purified on a L-fucose-sepharose column (prepared in house) using
loading buffer II (20 mM Tris/HCl, pH 7.8, 0.5 M NaCl, and 25 mM
CaCl2) and elution buffer II (20 mM Tris/HCl, pH 7.8, 0.5 M NaCl,
and 2 mM EDTA). For long-term storage, the protein was stored at
−80 °C.
FimH, Human Langerin, DLEC, SP-D, Mannose Binding
Protein (MBP), Dectin-2, and MMR. The FimH CRD linked with a
thrombin cleavage site to a 6His-tag (FimH-CRD-Th-6His) was
expressed in E. coli strain HM125 and purified by affinity
chromatography as described in Rabbani et al.4d Human langerin,
DLEC, SP-D, MBP, dectin-2, and MMR were purchased from R&D
systems (Minneapolis, MN).
Competitive Binding Assay. Biotinylated trimannose (TM)-PAA
polymer (20 μL, 1 mg/mL, Lectinity, Moscow) was mixed with 80 μL
of assay buffer (20 mM HEPES, 150 mM NaCl, and 10 mM CaCl2,
pH 7.4), 20 μL of FCS, and 80 μL of streptavidin−horseradish
peroxidase conjugate (500 U/mL, Roche, Mannheim, Germany) and
incubated for 2 h at 37 °C. The complex was stable for several weeks
when stored at 4 °C.
0.5 mL/min; and detection, 254 nm or ELSD]. For the H NMR
spectrum and HPLC trace of compound 4, see the Supporting
Information.
4-Amino-2-chlorophenyl α-D-Mannopyranoside (7). A sus-
pension of 64c,26 (430 mg, 1.28 mmol), morpholine (30 μL), and PtO2
(50 mg) in MeOH (20 mL) was hydrogenated (1 atm H2) for 45 min.
Then, the mixture was filtered and concentrated in vacuo to give crude
7 (443 mg) as a colorless oil, which contained approximately 15%
morpholine and was used in the next step without further purification.
1H NMR (500 MHz, CD3OD): δ 3.71−3.81 (m, 3H, H-4, H-5, H-6a),
3.83 (dd, J = 1.7, 12.7 Hz, 1H, H-6b), 3.95 (dd, J = 3.4, 9.1 Hz, 1H, H-
3), 4.11 (dd, J = 1.8, 3.4 Hz, 1H, H-2), 5.27 (d, J = 1.7 Hz, 1H, H-1),
6.61 (dd, J = 2.7, 8.7 Hz, 1H, C6H3), 6.78 (d, J = 2.7 Hz, 1H, C6H3),
7.09 (d, J = 8.7 Hz, 1H, C6H3). 13C NMR (125 MHz, CD3OD): δ 62.6
(C-6), 68.4 (C-4), 71.9 (C-2), 72.3 (C-3), 75.7 (C-5), 102.1 (C-1),
115.7, 117.4, 121.2, 153.2 (6C, C6H3). ESI-MS: m/z calcd for
C12H17ClNO6 [M + H]+, 306.1; found, 306.0.
2-Chloro-4-[(2-ethoxy-3,4-dioxocyclobuten-1-yl)amino]-
phenyl α-D-Mannopyranoside (8).4c To a solution of 7 (443 mg)
in MeOH (15 mL) was added diethyl squarate (379 μL, 2.56 mmol)
under argon, and the reaction mixture was stirred at rt for 1 d. Then,
the solvent was removed in vacuo, and the residue was purified by
MPLC on RP-18 (H2O/MeOH) to yield 8 (337 mg, 61% from 6) as a
yellow solid. 1H NMR (500 MHz, CD3OD): δ 1.47 (t, J = 7.1 Hz, 3H,
OCH2CH3), 3.66 (dt, J = 3.7, 9.9 Hz, 1H, H-5), 3.75 (d, J = 3.7 Hz,
2H, H-6), 3.79 (t, J = 9.8 Hz, 1H, H-4), 4.00 (dd, J = 3.4, 9.6 Hz, 1H,
H-3), 4.16 (dd, J = 1.8, 3.3 Hz, 1H, H-2), 4.81 (q, J = 7.1 Hz, 2H,
OCH2CH3), 5.56 (d, J = 1.5 Hz, 1H, H-1), 7.23 (m, 1H, C6H3), 7.32
(d, J = 9.0 Hz, 1H, C6H3), 7.47 (s, 1H, C6H3). 13C NMR (125 MHz,
CD3OD): δ 15.7 (OCH2CH3), 61.4 (C-6), 67.2 (C-4), 70.8 (C-2),
71.4 (C-3), 71.6 (OCH2CH3), 74.9 (C-5), 100.0 (C-1), 119.2, 120.2,
122.4, 124.7, 134.6, 152.5 (C6H3), 168.9, 176.2 (CC), 183.3, 186.9
(2 CO). ESI-MS: m/z calcd for C18H21ClNO9 [M + H]+, 430.1;
found, 430.1.
2-Chloro-4-[(2-(4-methylpiperazin-1-yl)-3,4-dioxocyclobut-
en-1-yl)amino]phenyl α-D-Mannopyranoside (4). Compound 8
(72.5 mg, 0.169 mmol) was dissolved in MeOH (7.5 mL) at 50 °C.
After it was cooled to rt, N-methylpiperazine (28.0 μL, 0.252 mmol)
and diisopropyl-ethylamine (DIPEA) (145 μL) were added, and the
reaction mixture was stirred for 18 h at rt. Then, the solvent was
removed in vacuo, and the residue was purified by LC-MS (RP-18,
H2O/MeCN + 0.2% HCO2H) to give 4 (73.9 mg, 90%) as a white
For assay development FimH, DC-SIGN, DC-SIGNR, MBP,
langerin, DLEC, SP-D, dectin-2, and MMR were each diluted in
assay buffer (20 mM HEPES, pH 7.4, 150 mM NaCl, and 10 mM
9814
dx.doi.org/10.1021/jm3010338 | J. Med. Chem. 2012, 55, 9810−9816