Journal of Medicinal Chemistry
Article
(CH2CH2CH3), 14.64 (OCH2CH3), 22.7 (CH2CH2CH3), 36.1
(CH2CH2CH3), 41.4 (C-4), 59.7 (OCH2CH3), 99.0 (C-3), 105.4(C-
5), 125.5 (2xCHAr), 126.4 (CHAr), 128.1 (2 × CHAr), 128.6 (2 ×
CHAr), 128.9 (CHAr), 129.2 (2 × CHAr), 134.6, 136.4 (C-6CAr, C-
6), 149.4, 151.6 (C-4CAr, C-2), 168.5 (COOR); IR (NaCl) ν 3363,
2963, 2933, 2872, 1724, 1602, 1576, 1494, 1448, 1411, 1273, 1216,
1098, 698 cm−1; elemental analysis calcd (%) for C23H25NO2, C 79.51,
H 7.25, N 4.03; found, C 79.21, H 6.93, N 3.94.
Ethyl 4,6-Bis(4-chlorophenyl)-2-methyl-1,4-dihydropyri-
dine-3-carboxylate (3g). Yellow solid, mp >250 °C; 1H NMR
(CDCl3, 250 MHz) δ 1.17 (t, J = 7.1 Hz, 3H, OCH2CH3), 2.44 (s, 3H,
C-2CH3), 4.05 (q, J = 7.1 Hz, 2H, OCH2CH3), 4.69 (d, J = 5.5 Hz,
1H, C-4H), 5.15 (dd, J = 1.88, 5.5 Hz, 1H, C-5H), 5.57 (bs, 1H, NH),
7.26 (s, 4H, ArH), 7.35 (s, 4H, ArH); 13C NMR (CDCl3, 63 MHz) δ
14.7 (OCH2CH3), 21.1 (C-2CH3), 40.8 (C-4), 59.8 (OCH2CH3), 99.4
(C-3), 105.5 (C-5), 126.8 (2 × CHAr), 128.8 (2 × CHAr), 129.4 (2 ×
CHAr), 129.5 (2 × CHAr), 132.1, 134.0, 134.6, 134.8 (C-6CAr, C-6, 2
× ArCCl), 147.3, 147.5 (C-4CAr, C-2), 168.5 (COOR); IR (NaCl) ν
3348, 2982, 1724, 1597, 1491, 1270, 1231, 1091, 1015, 757 cm−1;
elemental analysis calcd (%) for C21H19Cl2NO2, C 64.96, H 4.93, N
3.61; found, C 64.78, H 4.84, N 3.43.
3H, C-2CH3), 3.91 (q, J = 7.1 Hz, 2H, OCH2CH3), 5.21 (d, J = 5.1
Hz, 1H, C-4H), 5.40 (dd, J = 1.7, 5.1 Hz, 1H, C-5H), 5.57 (bs, 1H,
NH), 7.27−7.34 (m, 1H, ArH), 7.36 (s, 4H, ArH), 7.53−7.66 (m, 2H,
ArH), 7.76 (dd, J = 1, 8.2 Hz, 1H, C-4ArH); 13C NMR (CDCl3, 63
MHz) δ 14.3 (OCH2CH3), 20.8 (C-2CH3), 37.2 (C-4), 59.8
(OCH2CH3), 98.7 (C-3), 104.7 (C-5), 123.6 (CHAr), 126.8 (2 ×
CHAr), 127.1 (CHAr), 129.4 (2 × CHAr), 131.8 (CHAr), 133.6
(CHAr), 134.3, 134.4, 135.0 (C-6CAr, C-6, ArCCl), 143.7, 148.2,
148.7 (C-4CAr, C-2, ArCNO2), 167.8 (COOR); IR (NaCl) ν 3188,
1721, 1651, 1610, 1528, 1482, 1439, 1269, 1094, 826, 747 cm−1;
elemental analysis calcd (%) for C21H19ClN2O4, C 69.22, H 5.53, N
7.69; found, C 69.11, H 5.37, N 7.66.
Ethyl 6-(Furan-2-yl)-2-methyl-4-(4-tolyl)-1,4-dihydropyri-
dine-3-carboxylate (3t). Yellow syrup; 1H NMR (CDCl3, 250
MHz) δ 1.18 (t, J = 7.1 Hz, 3H, OCH2CH3), 2.32 (s, 3H, CH3), 2.44
(s, 3H, CH3), 4.05 (q, J = 7.1 Hz, 2H, OCH2CH3), 4.64 (d, J = 5.65
Hz, 1H, C-4H), 5.37 (dd, J = 1.58, 5.65 Hz, 1H, C-5H), 5.90 (bs, 1H,
NH), 6.40−6.44 (m, 2H, furylH), 7.10 (d, J = 8.02 Hz, 2H, C-4ArH),
7.23 (d, J = 8.02 Hz, 2H, C-4ArH), 7.39−7.40 (m, 1H, furylH); 13C
NMR (CDCl3, 63 MHz) δ 14.7 (OCH2CH3), 21.1 (CH3), 21.5
(CH3), 40.1 (C-4), 59.7 (OCH2CH3), 99.7, 103.4 (C-3, C-5), 105.1
(CH-furyl), 112.0 (CH-furyl), 126.3 (C-6), 128.1 (2 × CHAr), 129.4
(2 × CHAr), 136.0 (ArCCH3), 141.9 (CH-furyl), 146.0, 146.6, 149.1
(C-4CAr, C-2, C-furyl), 168.7 (COOR); IR (NaCl) ν 3348, 2980,
1724, 1662, 1604, 1268, 1096, 751 cm−1; elemental analysis calcd (%)
for C20H21NO3, C 74.28, H 6.55, N 4.33; found, C 73.99, H 6.37, N
4.22.
Docking Calculations. The crystal structure of the CaV1.2 L-
subtype VGCC has not been described, and therefore, for molecular
modeling studies we used the CaV1.2 L-subtype VGCC model
developed by D. Tikhonov and B. S. Zhorov and kindly shared with us
by Prof. Zhorov.24 Docking was performed with the program Molegro
Virtual Docker43 using the molecular docking algorithm Moldock
score. Prior to docking, the structures of nifedipine and (S)-3n were
built and their energies were minimized using Gaussian software
(Frisch, M. J.; et al. Gaussian 03, revision B.04; Gaussian, Inc.:
Pittsbusrg, PA, 2003). Calculations were run on an iMac with a 3.4
GHz i7 processor and 16 GB DDR3. Ligand binding cavities were
identified using the Molegro expanded van der Waals molecular
surface prediction algorithm with a grid resolution of 0.5 Å. A total of
100 docking runs with a population size of 100 were calculated over a
16 Å radius surrounding the predicted DHP binding site cavity with a
grid resolution of 0.3, a maximum of 15 000 iterations per position, a
scaling factor of 0.50, and crossover rate of 0.90 using the Moldock
score algorithm. Moldock optimizer function was used to more
precisely optimize H-bond geometries by calculating the position of
the hydrogen atoms for any hydrogen donors (both in the ligand and
in the proteins). Similar positions were clustered using a root mean
squared deviation (rmsd) of 1.5 Å. Prepositioned ligands were
randomized in the predicted cavity prior to each docking run, and
docking was constrained to the predicted DHPs binding site cavity. In
order to verify that positions resulting from in silico docking represent
correctly bound conformations, each position was visually inspected
and compared. Positions were also inspected and compared with the
rerank score algorithm, protein interaction, hydrogen bonding, and
affinity interaction energies and ordered by the energy of interaction
protein−ligand. Complexes were optimized using Moloc software44
ters. During energy minimization the position of amino acid side
chains were fixed while allowing all ligand atoms to move.
Ethyl 6-(4-Chlorophenyl)-4-(3-methoxyphenyl)-2-methyl-
1
1,4-dihydropyridine-3-carboxylate (3j). Yellow syrup; H NMR
(CDCl3, 250 MHz) δ 1.17 (t, J = 7.12 Hz, 3H, OCH2CH3), 2.44 (s,
3H, C-2CH3), 3.81 (s, 3H, OCH3), 4.08 (q, J = 7.12 Hz, 2H,
OCH2CH3), 4.69 (d, J = 5.5 Hz, 1H, C-4H), 5.19 (dd, J = 1.2, 5.5 Hz,
1H, C-5H), 5.54 (bs, 1H, NH), 6.72−6.77 (dd, J = 2.5, 8.1 Hz, 1H, C-
4ArH), 6.89−6.96 (m, 2H, C-4ArH), 7.23 (t, J = 7.8 Hz, 1H, C-4ArH),
7.35 (s, 4H, C-6ArH); 13C NMR (CDCl3, 63 MHz) δ 14.7
(OCH2CH3), 21.1 (C-2CH3), 41.3 (C-4), 55.5 (OCH3), 59.7
(OCH2CH3), 99.6 (C-3), 105.9 (C-5), 111.4 (CHAr), 114.2
(CHAr), 120.6 (CHAr), 126.8 (2 × CHAr), 129.3(2 × CHAr),
129.6 (CHAr), 133.8, 134.7, 134.8 (C-6CAr, C-6, ArCCl), 147.1, 150.7
(C-4CAr, C-2), 160.0 (ArC-OCH3), 168.6 (COOR); IR (NaCl) ν
3356, 2980, 1724, 1676, 1596, 1486, 1286, 1266, 1224, 1093, 754
cm−1; elemental analysis calcd (%) for C22H22ClNO3, C 68.83, H 5.78,
N 3.65; found, C 68.59, H 5.67, N 3.72.
Allyl 6-(4-Chlorophenyl)-2-methyl-4-phenyl-1,4-dihydropyr-
idine-3-carboxylate (3o). Orange syrup; 1H NMR (CDCl3, 250
MHz) δ 2.45 (s, 3H, C-2CH3), 4.52 (dd, J = 0.85, 5.3 Hz 2H,
OCH2CHCH2), 4.74 (d, J = 5.58 Hz, 1H, C-4H), 5.10−5.23 (m,
3H, C-5H, OCH2CHCH2), 5.60 (bs, 1H, NH) 5.76−5.93 (m, 1H,
OCH2CHCH2), 7.17−7.24 (m, 1H, ArH), 7.28−7.38 (m, 8H,
ArH); 13C NMR (CDCl3, 63 MHz) δ 18.8 (C-2CH3), 38.8 (C-4), 62.1
(OCH2CHCH2), 96.8 (C-3), 103.7 (C-5), 115.0 (OCH2CH
CH2), 124.2 (CHAr), 124.4 (2 × CHAr), 125.6 (2 × CHAr), 126.3 (2
× CHAr), 130.9 (OCH2CHCH2), 131.2, 132.2, 132.3 (C-6CAr, C-
6, ArCCl), 145.2, 146.4 (C-4CAr, C-2), 165.8 (COOR); IR (NaCl) ν
3342, 2926, 1678, 1606, 1484, 1221, 1095 cm−1; elemental analysis
calcd (%) for C22H20ClNO2, C 72.22, H 5.51, N 3.83; found, C 71.97,
H 5.43, N 4.00.
Ethyl 2-Methyl-4-(2-nitrophenyl)-6-(4-tolyl)-1,4-dihydropyr-
idine-3-carboxylate (3q). Yellow syrup; 1H NMR (CDCl3, 250
MHz) δ 0.98 (t, J = 7.1 Hz, 3H, OCH2CH3), 2.38 (s, 3H, CH3), 2.49
(s, 3H, CH3), 3.92 (q, J = 7.1 Hz, 2H, OCH2CH3), 5.21 (d, J = 5.05
Hz, 1H, C-4H), 5.38 (dd, J = 1.8, 5.05 Hz, 1H, C-5H), 5.67 (bs, 1H,
NH), 7.19 (d, J = 7.95 Hz, 2H, C-6ArH), 7.25−7.33 (m, 3H, ArH),
7.55 (dt, J = 1.0, 7.42 Hz, 1H, C-4ArH), 7.66 (dd, J = 1.22, 7.87 Hz,
1H, C-4ArH), 7.74 (dd, J = 1.0, 8.08 Hz, 1H, C-4ArH); 13C NMR
(CDCl3, 63 MHz) δ 14.3 (OCH2CH3), 20.8 (CH3), 21.6 (CH3), 31.1
(C-4), 59.7 (OCH2CH3), 98.5 (C-3), 103.6 (C-5), 123.5 (CHAr),
125.3 (2 × CHAr), 126.7 (CHAr), 129.9 (2 × CHAr), 131.9 (CHAr),
133.0, 133.5, 135.1 (C-6CAr, CHAr, C-6), 144.1, 148.2, 148.9 (C-
4CAr, C-2, ArCNO2), 168.0 (COOR); IR (NaCl) ν 3332, 2976, 1674,
1608, 1524, 1486, 1355, 1221, 1084, 750 cm−1; elemental analysis
calcd (%) for C22H22N2O4, C 69.83, H 5.86, N 7.40; found, C 69.86, H
5.69, N 7.64.
Pharmacology. SH-SY5Y Neuroblastoma Cells Culture. SH-
SY5Y cells were cultured following supplier instructions in a 1:1
mixture of F12 (Ham 12) and Eagle’s MEM supplemented with 15
nonessential amino acids, 10% heat-inactivated fetal bovine serum
(FBS), 1 mM sodium pyruvate, 100 μg/mL streptomycin, and 100
units/mL penicillin. Cells were kept at 37 °C in a humidified
atmosphere of 95% air and 5% CO2. For experimental procedures,
cells were cultured in 48-well plates at a density of 1 × 105 cells/well.
Treatments were performed in 1% FBS medium unless other
concentration is stated. Cells were used up to 13 passages.
Ethyl 6-(4-Chlorophenyl)-2-methyl-4-(2-nitrophenyl)-1,4-di-
hydropyridine-3-carboxylate (3r). Yellow syrup; 1H NMR
(CDCl3, 250 MHz) δ 0.97 (t, J = 7.1 Hz, 3H, OCH2CH3), 2.49 (s,
4320
dx.doi.org/10.1021/jm500263v | J. Med. Chem. 2014, 57, 4313−4323