Crystal Growth & Design
Article
3c as a colorless oil: mp 27−30 °C; 1H NMR (CDCl3) 5.89 (ddd, 1, J =
17.0, 10.3, 9.0), 5.16 (br d, 1, J = 10.3), 5.13 (br d, 1, J = 17.0), 3.68 (s,
3), 3.67 (s, 3), 3.65 (s, 3), 2.99 (dd, 1, J = 9.0, 5.9), 2.56−2.34 (m, 3),
2.29 (ddq, 1, J = 5.9, 6.7, 6.7), 2.09 (dd, 1, J = 15.3, 10.6), 1.02 (d, 3, J =
6.8), 0.98 (d, 3, J = 6.4); 13C NMR 174.2 (C), 173.5 (C), 173.0 (C),
134.6 (CH), 118.6 (CH2), 54.6 (CH), 53.1 (CH), 51.7 (CH3), 51.6
(CH3), 51.1 (CH3), 36.2 (CH2), 21.8 (CH), 19.2 (CH3), 14.2 (CH3);
IR (neat) 3080, 1745, 1740, 1640, 995, 915 cm−1.
Analysis of 3c by capillary GC (Heliflex, 30 m × 0.25 mm; 60−150
°C at 10 degrees/min, 5 min isothermal, 150−190 °C at 20 degrees/
min, 8 min isothermal; detector temperature 280 °C, injector
temperature 240 °C) gave 6 peaks (% of total integration): 11.8 min
(1%), 12.4 min (94%, 3c), 12.8 min (2%), 14.0 min (1%), 15.0 min
(1%), and 15.8 min (2%). This indicates that crude 3c is 94% pure and
that triacid 3b precipitates in similar purity.
γ-Irradiation of 21 Under Air. Crystalline 21 (100 mg, 0.90
mmol) was placed in a glass vial, capped, and subjected to 650 kGy
(32.5 h, University of Massachusetts, Lowell) γ-rays. A 10 mg portion of
the sample was dissolved in water and acidified with concentrated HCl
(2 drops). No precipitate was observed. Another 10 mg of sample was
dissolved in D2O for NMR analysis. Integration of the spectrum
indicated that the major component (60%) was starting material 21.
Approximately 21% of trimer 22a was also observed. Another product
(16%) was sodium trans-2,3-epoxybutanoate-2-d (23a): 1H NMR
(D2O) 3.10 (q, 1, J = 4.9), 1.33 (d, 3, J = 4.9). This data matches the
published data for the potassium salt of trans-2,3-epoxybutanoate:67 1H
NMR (D2O) 3.17 (d, 1, J = 2.4), 3.11 (dq, 1, J = 2.4, 5.1), 1.35 (d, 3, J =
5.1). Finally, other peaks (4−5%) were observed from uncharacterized
products: 1H NMR (D2O) 4.59 (d, J = 6.1), 4.21 (d, J = 4.2), 1.17 (d, 3,
J = 6.7).
Preparation and Crystal Growth for Polymorphs of Sodium
trans-2-Butenoate (1). Form 1_I. Sodium trans-2-butenoate was
readily prepared by neutralizing a solution of trans-2-butenoic acid with
NaOH (1 M) to the phenolphthalein end-point. The solubility was
assessed, and numerous methods for crystal growth were attempted,
including crystallization from water and methanol as well as mixtures of
those solvents with EtOH, DMSO, DMF, triethylene glycol, acetone,
CHC13, and Et2O. Methods included slow evaporation between −10
and 50 °C, doping (dyestuffs) of aqueous solutions,81 evaporation at
reduced pressure, and crystal growth in gels/Sephadex G-25. The
highest-quality crystals were obtained by slow evaporation of a 1:1
H2O:DMSO solution at room temperature. Salt 1 is highly soluble in
H2O (solubility = 720 g L−1), and nucleation almost invariably occurs at
the solution suface. The result is very thin “cellophane-like” crystals
with a high degree of mosaicity (ω ≈ 2° from Weissenberg
photography). The chosen mixed solvent system appears to decrease
the rate of crystallization, and thus, higher-quality crystals form.
Form 1_II (for Room-Temperature Structure Determination).
Sodium hydroxide (0.80 g, 20 mmol) was added to a stirred solution of
trans-2-butenoic acid (1.96 g, 20 mmol) in 40 mL of 1:1 EtOH: H2O.
The mixture was stirred at 25 °C for 4 h and filtered. The filtrate was
placed in a 100 mL glass crystallizing dish and allowed to evaporate at
RT. The dish was covered with a Kimwipe held in place with a rubber
band. Several holes were punctured in the Kimwipe with a needle.
Crystals of 1_II are very thin and fragile, so extra care was needed to
avoid deformation. Colorless thin plate-like crystals were observed on
the surface of the solution after 2 weeks. The crystals were carefully
removed from the glass dish using a spatula and dried on filter paper.
Form 1_II (for Low-Temperature Structure Determination).
Sodium hydroxide (0.811 g, 0.0203 mol) was dissolved in 40 mL of a
1:1 mixture of ethanol and H2O. To the solution, 1.958 g (0.0227 mol)
of trans-2-butenoic acid and 3 mL of dimethyl sulfoxide were added; the
reaction mixture was stirred for 4 h, filtered, and allowed to evaporate
slowly. Colorless, very thin film-like crystals of Form 1_II were
obtained from the top of the solution after 3 weeks of slow-evaporation.
The crystals were carefully transferred to a glass slide and immediately
covered with Paratone oil prior to the X-ray analysis.
X-ray Data Collection, Solution, and Refinement for 1_I. All
operations were performed on a Syntex P21 serial diffractometer, a
graphite-monochromator, and normal-focus, sealed tube Mo Kα
radiation. A 1.5 mm collimator was used for all experiments, as the
crystals were large (max. dimension ca. 1.2 mm), mica-like in
appearance and physical nature, and could not be cut without
deformation. Data collection was carried out at 294 K. All
diffractometer manipulations, including data collection, integration,
scaling, and absorption corrections, were carried out using the Syntex
data collection software.82 Initial data reduction, absorption correc-
tions, solution, and refinement were performed using the Syntex XTL
package on a Nova 1200 32k computer.83 Completeness was 100%.
From the systematic absences, the observed metric constants and
intensity statistics, space groups P21 or P21/m (both with Z′ = 2) were
considered initially. However, while a plausible structure was obtained,
refinements would not yield R factors below ca. 22%. Further work on
the problem was abandoned at that time. We decided to re-examine the
data and solution at the time that this paper was in preparation. We
Gas Chromatographic Analysis of γ-Irradiated 1. Another
irradiated sample of 1 was acidified, concentrated without removal of
the precipitated 3b, taken up in ether, and treated with diazomethane to
give a mixture of methyl esters. GC analysis as above gave 8 peaks (% of
total integration): 4.6 min (0.4%), 5.2 min (12%, 20c), 5.7 min (1.2%),
11.8 min (6%), 12.4 min (68%, 3c), 12.8 min (7%), 15.0 min (2%), and
15.8 min (3%). Samples eluting at 4.6−5.8 min (100−120 °C) are
dimers; samples eluting at 11.8−12.8 min (150 °C) are trimers, and
samples eluting at 15.0−15.8 min (150−170 °C) are tetramers.
Capillary GC analysis of methyl 3-hydroxybutanoate (4.8 min), diester
2d (4.9 min), dimethyl (E)-2-ethylidene-3-methylpentandioate (5.3
min),66 and dimethyl (Z)-2-ethylidene-3-methylpentandioate (7.2
min)66 gave peaks distinct from those observed in the chromatograms
obtained from samples of irradiated 1. A sample of both diastereomers
of dimethyl 2-ethenyl-3-methylpentanedioate (20c)66 eluted with the
major byproduct at 5.2 min in the samples of irradiated 1. Therefore,
acid 3b is the major product (68%) and precipitates selectively upon
acidification.
The mother liquor resulting from acidification of irradiated 1 and
removal of the precipitated 3b by filtration was concentrated, taken up
in ether, and treated with diazomethane to give a mixture of methyl
esters. GC analysis as above gave 8 peaks (% of total integration): 4.6
min (1%), 5.2 min (22%, 20c), 5.7 min (1%), 11.8 min (5%), 12.4 min
(57%, 3c), 12.8 min (11%), 15.0 min (1%), and 15.8 min (2%). Not all
of the triacid 3b precipitates upon acidification because it is still the
major product in solution after removal of all the precipitated 3b.
Preparation of Sodium trans-2-Butenoate-2-d (21). trans-2-
Butenoic-2-d acid4 (1.00 g, 12 mmol) was dissolved in 20 mL of water
and sodium hydroxide (0.47 g, 12 mmol) was added. The reaction
mixture was stirred at room temperature for 1 h and concentrated under
reduced pressure to give a colorless solid that was washed with acetone
to remove any excess acid and dried to give 1.2 g (96%) of 21 as a
colorless solid, mp >220 °C.
γ-Irradiation of 21 Under Nitrogen. Preparation of rel-
(1R,2S,3S,4R,5S)-2,4-Dimethyl-6-heptene-1,3,5-tricarboxylic-
1,3,5-d3 Acid (22b). Crystalline 21 (100 mg, 0.90 mmol) was placed
in a 3 mm inside diameter glass tube and packed tightly using a glass
rod. A septum was placed at the rim of the glass tube, and the sample
was evacuated for 3 min. The sample was then placed under nitrogen for
3 min and sealed using an air/gas flame. The sample was subjected to
500 kGy (25 h, University of Massachusetts, Lowell) γ-rays. The
product was isolated by dissolving the sample in 2 mL of water and
adding a few drops of concentrated hydrochloric acid to form a
colorless precipitate that was collected and dried to give 11 mg of a 9:1
mixture of triacid 22b and unreacted acid trans-2-butenoic-2-d acid as a
colorless solid: 1H NMR (DMSO-d6) 5.83 (dd, 1, J = 10.4, 17.0), 5.10
(br d, 1, J = 10.4, 1.8), 5.09 (dd, 1, J = 17.0, 1.8), 2.22 (dq, 1, J = 11, 6.7),
2.07 (q, 1, J = 6.9), 1.85 (d, 1, J = 11.0), 0.933 (d, 3, J = 6.9), 0.918 (d, 3,
J = 6.7). Residual peaks for trans-2-butenoic-2-d acid were observed at δ
6.81−6.86 (m, 1) and 1.83 (d, 3, J = 6.7). Irradiation of the peak at δ
0.91 showed NOEs to the peaks at δ 1.85, 2.07, 2.22. Irradiation of the
peak at δ 2.07 showed an NOE to the peak at δ 0.918. Irradiation of
peak at δ 2.22 showed NOEs to the peaks at δ 1.85 (small), 0.918, and
0.933. Irradiation of the peak at δ 5.83 showed NOEs to the peaks at δ
5.09 and 5.10.
678
Cryst. Growth Des. 2021, 21, 663−682