The Journal of Organic Chemistry
Article
1
TLC (5:3:2 butanol/water/acetic acid) Rf = 0.47; FTIR (KBr pellet)
methylsulfonyl derivative as a blue solid that was pure by NMR: H
1
1383, 1516, 1593, 2184, 3418, cm−1; H NMR (CDCl3): δ 7.19 (2H,
NMR (CD3OD) δ 4.62 (4H, m), 3.05 (3H, s), 2.55 (3H, s), 1.99 (3H,
s).
d, J = 8 Hz), 6.74 (2H, d, J = 8 Hz), 4.68 (2H, t, J = 7.2 Hz), 3.91 (3H,
s) 3.06 (2H, t, J = 7.8 Hz), 2.45 (3H, s), 2.08 (3H, s); 13C NMR
(DMSO-d6) δ 171.0, 157.0, 156.3, 154.0, 148.8, 139.9, 130.1, 128.6,
128.3, 115.7, 97.1, 49.1, 35.5, 32.7, 13.3, 10.5 (see Supporting
Information for 2D NMR: HMBC and HMQC); HRMS (FAB+) m/
z: [M+H]+ Calcd for C18H21N4O2 325.1664; Found 325.1658.
6-Amino-4-[2-(1H-indol-3-yl)-ethylimino]-1,2,5-trimethyl-
1H-benzimidazole-7-one (1g). 44 mg (40%); mp 191−192 °C;
TLC (5:3:2 butanol/water/acetic acid) Rf = 0.37; FTIR (KBr pellet)
To 19 mg of the methylsulfonyl derivative dissolved into 1.5 mL of
methanol were added 24 μL of 40% aqueous methylamine. The
solution, which turns red upon addition of the amine, was stirred for
24 h in a stoppered round-bottom flask at rt. The reaction was
concentrated in vacuo giving a red colored residue, which was purified
in the same manner as 6. The methanolic eluent was first acidified with
a few drops of TFA to aid in the elution. The resulting blue solid was
recrystallized with methanol and ethyl acetate affording 1h as a blue
TFA crystalline salt: mp 158−160 °C; TLC (5:3:2 butanol/water/
acetic acid) Rf = 0.35; FTIR (KBr pellet): 1180, 1354, 1533, 1602,
1676, 3200, 3369, cm−1; 1H NMR (CD3OD) δ 4.65 (2H, t, J = 5 Hz),
4.59 (2H, t, J = 5 Hz), 3.86 (3H, s), 3.04 (3H, s), 2.56 (3H, s), 2.00
(3H, s); 13C NMR (DMSO-d6) δ 171.0, 158.9, 158.6. 156.8, 153.6,
148.4, 148.3, 140.8, 128.3, 97.3, 68.5, 45.1, 37.2, 36.0, 13.5, 10.5; (see
Supporting Information for 2D NMR: HMBC and HMQC); HRMS
(FAB+) m/z: [M+H]+ Calcd for C13H19N4O4S 327.1127, Found
327.1119. Anal. C, H, N, Calcd for C13H18N4O4S·TFA·0.7 H2O: C,
39.77; H, 4.54; N, 12.37. Found: C, 39.59; H, 4.30; N, 12.16.
2,5-Dimethyl-1-(3-methoxypropyl)-1H-benzimidazole (8). A
solution consisting of 5 mL (6.5 g, 38 mmol) of 3-nitro-4-
chlorotoluene and 10 mL of methoxypropyl amine was refluxed
under nitrogen until the reaction was complete by TLC (DCM). The
reaction solution was concentrated in vacuo, and the resulting residue
was taken up in water and extracted with DCM 3× (50 mL). The
organic extracts were washed with aqueous saturated sodium chloride
2× (50 mL), dried with sodium sulfate, and concentrated to give an
orange oil that was purified by silica gel column chromatography
(DCM).
The oil was dissolved in 50 mL of methanol and hydrogenated with
1 g of 5% Pd on carbon under 50 psi of H2 for 3 h. The catalyst was
filtered through a pad of Celite and washed with methanol, and the
filtrate was concentrated in vacuo to give the diamine, 4.75 g, 65%
yield. The diamine was dissolved in a solution consisting of 15 mL of
acetic acid and 15 mL of acetic anhydride and refluxed for 1 h. The
reaction was concentrated in vacuo to give diacetamide in quantitative
yield. The diacetamide (1 g) was refluxed in 25 mL of 4 N HCl for 2 h,
cooled to rt, and neutralized with concentrated ammonium hydroxide
(pH = 8), extracted with DCM 3× (50 mL), dried with sodium sulfate,
and concentrated to give 8 as an amber colored oil that was pure by
NMR: 1H NMR (CDCl3): δ 7.46 (1H, s), 7.17, (1H, d, J = 8 Hz), 7.05
(1H, d, J = 8 Hz), 4.21 (2H, t, J = 6 Hz), 3.32 (3H, s), 3.28 (2H, t, J =
6 Hz), 2.56 (3H, s), 2.46 (3H, s), 2.02 (2H, q, J = 6 Hz); 13C NMR
(CDCl3) δ 151.5, 142.6, 133.0, 131.4, 123.3, 118.7, 68.4, 58.5, 40.3,
28.5, 21.4, 13.5; HRMS (FAB+) m/z: [M+H]+ calcd for C13H19N2O+
219.149, Found 219.150.
1
746, 800, 1128, 1199, 1371, 1525, 1599, 1689, 3254 cm−1; H NMR
(CD3OD) δ 7.65 (1H, d, J = 8.1 Hz), 7.29 (1H, d, J = 8.1 Hz), 7.09−
6.97 (3H, m), 4.78 (2H, t, J = 7.2 Hz), 3.79 (3H, s), 3.23 (2H, t, J =
7.2 Hz), 2.41 (3H, s), 1.94 (3H, s); 13C NMR (DMSO-d6) δ 171.0,
158.4, 158.1, 156.4, 153.5, 148.6, 140.0, 136.7, 128.4, 127.6, 123.9,
121.5, 119.0, 111.9, 110.8, 97.2, 48.4, 32.6, 26.6, 13.1, 10.6; (see
Supporting Information for 2D NMR: HMBC); HRMS (FAB+) m/z:
[M+H]+ Calcd for C20H22N5O 348.1824, Found 348.1819. Anal. C, H,
N, Calcd for C20H21N5O·1.5 H2O·1.7TFA: C, 46.82; H, 4.32; N,
11.67. Found: C, 46.98; H, 3.96; N, 12.08.
Nitration of 7 To Afford 4,6-Dinitro-1-(2-nitrooxyethyl)-2,5-
dimethyl-1H-benzimidazole. To a solution consisting of 10 mL of
90% nitric acid and 5 mL of concentrated sulfuric acid were added 200
mg (1.1 mmol) of 7 (prepared as previously described14) in small
portions over 5 min at rt. After the addition, the reaction was heated to
90 °C and maintained at that temperature for 24 h. The reaction was
cooled to rt and neutralized with 30% aqueous sodium hydroxide with
the addition of ice to keep the solution cool. The resulting pale yellow
precipitate was filtered, washed with water, air-dried, and recystallized
from ethanol to give 202 mg of pale yellow needles, 69% yield: mp
165−166 °C; TLC (ethyl acetate) Rf = 0.43; FTIR (KBr pellet) 754,
1
852, 885, 1039, 1278, 1332, 1527, 1641, 3059, 3443 cm−1; H NMR
(CDCl3) δ 8.15 (1H, s), 4.82 (2H, t, J = 5 Hz), 4.58 (2H, t, J = 5 Hz),
2.74 (3H, s), 2.62 (3H, s). Anal. C, H, N, Calcd for C11H11N5O7·0.5
H2O: C, 39.53, H, 3.62; N, 20.95. Found: C, 39.59; H, 3.33; N, 20.74.
6-Amino-1-(2-hydroxyethyl)-4-imino-2,5-dimethyl-1H-ben-
zimidazole-7-one (9). A mixture consisting of 500 mg (1.5 mmol) of
the nitration product of 7, 500 mg of 5% Pd on carbon, and 30 mL of
methanol was hydrogenated under 50 psi of H2 for 3 h at rt. The
catalyst was filtered off through a pad of Celite, and the filtrate was
acidified with 5 drops of conc HCl. Concentration of the solvent in
vacuo gave the HCl salt of 4,6-diamino-1-(2-hydroxyethyl)-2,5-dimethyl-
1H-benzimidazole from ethyl acetate and methanol as tan crystals, 366
mg, 81% yield.
This HCl salt, 250 mg, was then added to a solution consisting of
688 mg (3 equiv) of Fremy’s salt in 25 mL of monobasic phosphate
buffer (pH = 2.1) and stirred for 30 min. The resulting dark purple
solution was immediately loaded on a nitrogen push reversed phase
column (phenyl BakerBond) set at 20 psi and eluted with water. The
water elution removes any buffer or salts remaining from the reaction.
After the initial water elution the eluent is changed to 100% methanol,
and the dark purple band is collected and further acidified with a few
drops of phosphoric acid. The purple methanolic solution was
concentrated in vacuo resulting in a purple solid that was recrystallized
from methanol and ethyl acetate with cooling at 4 °C for 12 h to afford
9 as a dark purple crystalline phosphate salt, 350 mg, 95% yield: mp
dec >145 °C; TLC (5:3:2 butanol/water/acetic acid), Rf = 0.38; FTIR
Nitration of 8 To Afford 2,5-Dimethyl-4,6-dinitro-1-(3-
nitrooxypropyl)-1H-benzimidazole. Compound 8 was dissolved
in 10 mL of concentrated sulfuric acid and cooled on ice. To the
cooled sulfuric acid solution 10 mL of 90% nitric acid were added
dropwise. The reaction was stirred at rt for 12 h. TLC analysis (ethyl
acetate) showed two nitration products. The reaction was then heated
to 50 °C until TLC showed one product. The reaction was poured
over ice and neutralized with sodium bicarbonate. The neutral solution
was extracted 3× (50 mL) with DCM, dried with sodium sulfate, and
concentrated giving a yellow residue. The residue was recrystallized
with hot ethyl acetate and hexane to yield 500 mg of yellow needles,
41% for two steps: mp; 140−142 °C; TLC (ethyl acetate) Rf = 0.43;
FTIR (KBr pellet): 657, 723, 856, 1020, 1168, 1327, 1440, 1529, 1639,
1
(KBr pellet) 617, 742, 1107, 1400, 1508, 1624, 3095, 3373 cm−1; H
NMR (CD3OD) δ 4.38 (2H, t, J = 6 Hz), 3.86 (2H, t, J = 6 Hz), 3.54
(3H, s) 1.99 (3H, s); 13C NMR (DMSO-d6) δ 168.5, 156.7, 155.8,
151.2, 141.4, 125.1, 95.5, 59.8, 47.9, 12.6, 8.3; HRMS (MALDI-TOF)
m/z: [M+H]+ Calcd for C11H15N4O2 235.119, Found 235.119.
6-Amino-4-methylimino-2,5-dimethyl-1-[2-(methylsulfonyl-
oxy)ethyl]-1H-benzimidazole-7-one (1h). To a solution consisting
of 205 mg (0.62 mmol) of 9 in 10 mL of dry pyridine were added 100
μL of methane sulfonyl chloride (2.1 equiv) under nitrogen at rt, and
the solution was stirred for 12 h. Pyridine was removed in vacuo, and
the resulting blue residue was purified by reversed phase
chromatography in the same manner as described for 6, giving the
3101 cm−1; H NMR (CDCl3) δ: 8.13 (1H, s), 4.49 (2H, t, J = 5.4
Hz), 4.37 (2H, t, J = 5.4 Hz), 2.70 (3H, s), 2.59 (3H, s), 2.31(2H, q, J
= 6 Hz). Nitrated 8 was used to synthesize 10 without any further
purification and characterization.
6-Amino-1-(3-hydroxypropyl)-4-imino-2,5-dimethyl-1H-
benzimidazole-7-one (10). A solution of 0.5 g (1.47 mmol) of the
nitration product of 8 in 100 mL of methanol was reduced under 50
psi H2 in the presence of 150 mg of 5% Pd on carbon for 12 h. The
catalyst was filtered off through a pad of Celite, and the filtrate was
1
G
dx.doi.org/10.1021/jo401927n | J. Org. Chem. XXXX, XXX, XXX−XXX