S. W. Kortum et al. / Bioorg. Med. Chem. Lett. 19 (2009) 5919–5923
5923
4. (a) Angiolillo, D. J.; Bhatt, D. L.; Gurbel, P. A.; Jennings, L. K. Am. J. Cardiol. 2009,
103, 40A; (b) Cannon, C. P.; Husted, S.; Harrington, R. A.; Scirica, B. M.;
Emanuelsson, H.; Peters, G.; Storey, R. F. J. Am. Coll. Cardiol. 2007, 50, 2196.
5. Parlow, J. J.; Burney, M. W.; Case, B. L.; Girard, T. J.; Hall, K. A.; Hiebsch, R. R.;
Huff, R. M.; Lachance, R. M.; Mischke, D. A.; Rapp, S. R.; Woerndle, R. S.; Ennis,
M. D. Bioorg. Med. Chem. Lett. 2009, 19, 4657.
6. Levy, D.E.; Smyth, M.S.; Scarborough, R.M. WO2003/022214.
7. (a) Gewald, K. Z. Chem. 1962, 305; (b) Chem. Abstr. 1963, 58, 6770.; (c) Gewald,
K. Chem. Ber. 1965, 98, 3571.
8. Aminothiazole synthesis of compound 3: to a mixture of sulfur (6.4 g, 200 mmol)
in DMF (25 mL) was added methyl cyanoacetate (19.8 g, 200 mmol). The
mixture was placed under nitrogen and triethylamine (15 mL, 108 mmol) was
added to form a burnt orange solution. Butyraldehyde (18 mL, 200 mmol) was
added dropwise at a sufficient rate as to keep the temperature of the mixture
between 45 and 50 °C. Once the addition was complete the mixture was
allowed to stir at room temperature for 18 h. The mixture was partitioned
between brine and ethyl acetate. The layers were separated and the organic
phase washed three times with brine, dried over anhydrous magnesium sulfate
and concentrated under reduced pressure. The residue was purified via flash
chromatography on silica gel (100 g) using 15% ethyl acetate in hexanes.
Fractions containing the desired product were concentrated under reduced
pressure, slurried in hexanes and collected via vacuum filtration to give 25.74 g
(70%) of the title compound: 1H NMR (300 MHz, chloroform-d) d ppm 1.11 -
1.31 (m, 3H) 2.61 (qd, J = 7.52, 1.21 Hz, 2H) 3.76–3.83 (m, 3H) 5.79 (br s., 2H)
6.62 (t, J = 1.31 Hz, 1H).
Compounds which exhibited the greatest affinity for the P2Y12
receptor were compounds which either contained a phenyl group
directly attached to the carbonyl such as 21k and 21d or analogs
which are small and branched immediately following the carbonyl
group as in the 2-methylpropanoyl analog 21b. Compared with the
biphenyl analog 21k, analogs such as 21a, and 21g, where the phe-
nyl ring is one methylene group removed from the carbonyl were
22–77-fold less potent in the P2Y12 binding assay respectively and
28–46-fold less potent in the hPRP aggregation assay. Only 21b
was equivalent in potency to 21k in the hPRP aggregation assay.
Here too, compounds with higher protein binding as indicated by
a large shift between the P2Y12 binding assay with and without
added protein such as 21d, 21g, and 21j showed weaker hPRP
aggregation inhibition.
Receptor binding studies were conducted on other closely re-
lated purinergic receptors such as P2Y1 and P2Y13, which share
19% and 48% homology with P2Y12, respectively. A subset of thie-
nopyrimidine analogs were tested and showed a greater than
100-fold selectivity for the P2Y12 receptor over both the P2Y1 and
P2Y13 receptors. The majority of compounds made were not tested
for selectivity against these receptors.
9. P2Y12 assays: dry compounds are diluted as 10 mM dimethylsulfoxide (DMSO)
stocks and are tested in a seven-point, threefold dilution series run in triplicate
beginning at 10 lM. A 1 mM DMSO intermediate stock is made in a dilution
We have demonstrated that the thienopyrimidine core can be
used in preparing potent P2Y12 inhibitors. Northern hydrophobic
groups combined with southern hydrophilic groups give low nano-
molar P2Y12 inhibitors with low micromolar inhibition of hPRP.
Compounds such as 15h (5 nM), 15k (4 nM), and 21k (3 nM) con-
taining the biphenyl northern substituent and highly polar amide
and acid substituents in the southern region exhibit the greatest
potency in the P2Y12 binding assay. These compounds also exhibit
the greatest potency in the hPRP aggregation assay at 4, 3, and
plate and from this the seven dilutions are made. The highest concentration is
diluted into water containing 0.02% Bovine serum albumin (BSA), and the
remaining six concentrations are diluted into assay buffer containing 0.02%
BSA. To a polypropylene assay plate the following are added: (a) 30
buffer containing one protease inhibitor cocktail tablet per 50 mL; (b) 30
1 nM 33P 2-MeSADP made in assay buffer containing 0.02% BSA and 12.5 mg/
mL ascorbic acid; (c) 30 L of cold 1.5 M 2-MeSADP for the positive control
wells, or assay buffer containing 0.02% BSA and 12.5 mg/mL ascorbic acid for
the negative control wells; (d) (Method a) 60 L of 10 g/well membranes,
(Method b) 60 L of 1 g/well membranes, (Method c) 60 L of 0.3 g/well
l
L of assay
lL of
l
l
l
l
l
l
l
l
membranes.Incubate the plates at room temperature for 1 h. Stop the reaction
using a cell harvester to aspirate/transfer the supernatant onto GF/B UniFilter
plates, and wash three times with wash buffer, aspirating between each wash.
The filter plates are dried for approximately 20 min in an oven at 50 °C. Back
seals are adhered to the filter plates and 25 lL of Microscint 20 scintillation
fluid is added. The filter plates are sealed, shaken for 30 min, and counted on a
Top Count.
5 lM, respectively. The highly polar acid and amide groups of
15k, 21k, and 15h help to offset protein binding attributes of the
highly hydrophobic biphenyl group. A smaller northern substitu-
ent such as the isopropyl amide of 21b with reduced protein bind-
ing improves the hPRP to P2Y12 ratio but was 10-fold less potent
than biphenyl 21k in the P2Y12 binding assay. As indicated by some
of the differences between assay results with and without added
protein, the presence of protein binding can negatively impact
the hPRP aggregation activity of the thienopyrimidines.
10. P2Y12 assays with added protein: the same as the P2Y12 assay without protein
with the following exceptions:(Method a) 60
with 5X human serum albumin (HSA) (1.75%) and 5X AGP (0.075%), (Method b)
60 of g/well membranes made with 5X HSA (1.75%) and 5X AGP
(0.075%), (Method c) 60 L of 0.3 g/well membranes made with 5X HSA
(1.75%) and 5X AGP (0.075%).
lL of 1 lg/well membranes made
lL
1 l
l
l
11. Human platelet-rich plasma (hPRP) preparation:Fifty millilitres polypropylene
centrifuge tubes were filled with whole blood and centrifuged at 910g ꢁ 10 s
and then 200g ꢁ 15 min at room temperature to obtain platelet-rich plasma
(PRP). PRP was removed using a wide bore transfer pipet avoiding disturbance
of the buffy coat (polymorphonuclear leukocytes (PMNLs)) and red blood cells,
and placed in a clean polypropylene tube. Remaining plasma, buffy coat and
red cells were centrifuged at 2380g ꢁ 15 min, again at room temperature, to
obtain platelet-poor plasma (PPP). PPP was removed, in the same manner as for
the PRP, and placed in a clean polypropylene tube. PRP platelet counts were
determined using a Z1 Coulter Particle Counter and individual PRP was diluted
Supplementary data
Supplementary data associated with this article can be found, in
References and notes
to 300,000 platelets/lL with autologous PPP.hPRP aggregation assay: the 96-
1. (a) BalditSollier, C.; Berge, N.; Boval, B.; Hovsepian, L.; Drouet, L. Thromb.
Haemost. 2009, 101, 116; (b) Joseph, J. E.; Machin, S. J. Blood Rev. 1997, 11, 178;
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Pharmacol. 2001, 60, 416; (c) Andre, P.; Delaney, S. M.; LaRocca, T.; Vincent, D.;
DeGuzman, F.; Jurek, M.; Koller, B.; Phillips, D. R.; Conley, P. B. J. Clin. Invest.
2003, 112, 398; (d) Hollopeter, G.; Jantzen, H.-M.; Vincent, D.; Li, G.; England,
L.; Ramakrishnan, V.; Yang, R.-B.; Nurden, P.; Nurden, A.; Julius, D.; Conley, P. B.
Nature 2001, 409, 202.
well hPRP aggregation assay monitors aggregation based on the increase of
light transmittance through a stirring suspension of platelets after stimulation
by adenosine diphosphate (ADP) as they aggregate into large particles. Assays
were performed using SpectroMax 190 Microplate Spectrophotometer with
SoftMax Pro software from Molecular Devices. Platelets were tested for their
sensitivity to compounds in 180
18 L of 10X compound and 14
Reactions were initiated by the addition of 20
l
l
L reaction volumes containing 144
L of 10X ADP in a 96-well polystyrene plate.
M ADP. Compounds were
M. Each concentration of inhibitor was
lL PRP,
l
l
tested at a final concentration of 30
tested in duplicate.
l
3. Savi, P.; Pereillo, J. M.; Uzabiaga, M. F.; Combalbert, J.; Picard, C.; Maffrand, J. P.;
Pascal, M.; Herbert, J. M. Thrombo. Haemost. 2000, 84(1), 891.