S. Alzahrani et al. / Journal of Molecular Structure 1218 (2020) 128473
7
Fig. 4. 3D models of Hirshfeld surface as d
(A), fragment patch (B) and unit-cell (C) of H2BHNH ligand.
norm
complex, which appeared cover the whole molecule. Whiles, the
LUMO levels appeared extended over the free ligand only but
concentrated on definite organic moiety in the two complexes with
absence for the two metals.
Also, important energy indices and dipole moment values were
calculated and displayed (Table 3S), for investigation. The structural
activity relationships can be predicated based on such data calcu-
lated. The lower dipole moment values for the ligand and its
complexes point to lipophilic feature of them, which is promising
for biological efficiency. Regarding the two complexes, the reduced
energy values of binding, spin polarization, exchange-correlation,
electrostatic and kinetic, signify the high stability of complexes.
3.6.2. Electrostatic potential map (MEP)
This maps (MEP) were used to discriminate electrophilic and
nucelophilic attack sites in structural forms of investigated com-
pounds. The maps of all compounds were built and shown (Fig. 9S)
three indicating colours. The blue area mentioned to electron-poor
region that obvious for reagents have nucelophilic attack ability. On
the other hand, the red area mentioned to electron rich region that
obvious for reagents have electrophilic attack ability. In addition to,
the green area specified to neutral electrostatic potential region
Fig. 5. Theoretical XRD pattern for H2BHNH ligand.
in its features. This has been enhanced by 2D-fingerprint plots
(Fig. 5S), which displayed the elemental contribution in surface
contact, separately [27]. As typed on the figures, the significant
contribution was recorded from carbon (8.7, 9.6%) and oxygen
(3.2e3.7%) atoms in three packing systems.
XRD patterns were computationally drawn for the ligand and its
complexes by using Crystal Maker 6.8 software (Figs. 5 & 6S), for
comparison. The ligand pattern appeared distinctly different from
that of two complexes, while the complexes appeared quietly
compatible. Miller indices (hkl) were estimated as 001(ligand), 010
(Zn (II) complex) and 100 (Cd (II) complex). Also, the d-spacing
were 17.61, 18.02 and 17.30 Å, respectively. Practical XRD patterns
couldn’t executed due to unavailability of technique, so the com-
parison is completely missing.
3.7. Biological efficiency
MIC was evaluated for three compounds towards different mi-
croorganisms in comparing to certified antibacterial drug (cipro-
floxacin) and other antifungal drug (fluconazole). The data obtained
(Table 4S) reflect the high efficiency of the ligand towards all mi-
crobes, while Zn(II) complex displayed a sufficient inhibition to-
wards B. subtilis and A. flavus. It was known that, the mild inhibition
of complexes are preferable than the high efficiency of pure organic
ligands in agreement with chelation theory [31]. Antioxidant
behaviour for the tested compounds were assessed by credible and
precise method (ABTS) [32]. The data obtained (Table 5S) reflect the
successful antioxidant behaviour of all tested compounds particu-
larly the complexes. The two complexes displayed a compatible
results with reference used (ascorbic acid). Furthermore, the
cytotoxic behaviour was also evaluated versus colorectal carcinoma
cell line (HCT-116) (Table 6S) in parallel with 5-fluorouracil drug (5-
FU). Highly reduced IC50 values recorded, particularly with Cd(II)
3.6. Computational studies
3.6.1. Conformational studies
Using DFT method on DMOL3 module, the structural optimi-
zation was executed for the ligand and its complexes (Fig. 7S). The
exported files displayed various significances among that, the bond
angles which compared between ligand and complexes, to support
complex geometries. The following angles C (8)-N (7)-C (4), O (12)-
C (8)-N (7), O (12)-C (8)-C (9), N (13)-C (10)-C (11), C (15)-N (14)-N
(13), H (34)-N (14)-N (13) O (23)-C (18)-C (16) and O (23)- C (18)eC
(19) " were monitored after complexation. A confidential changes
were observed with such angles in two complexes in agreement
with octahedral configuration (sp3d2 hybridization) [28]. In addi-
tion to, the bonds of C (4)eN (7), N (7)eC (8), N (14)eC (15), N (13)e
N (14) and C (18)eO (23) suffer elongation within two complexes
[29]. Whereas, HOMO and LUMO maps were established on opti-
mized structures and exhibited (Fig. 8S). The HOMO levels were
mainly focused on definite organic moiety except with Zn(II)
complex (3.16 mg/mL), which denote a promising antitumor feature
of such compounds.
3.8. Inhibitory simulation
Using MOE module (Vs. 2015) behaviour of the ligand and its
complexes was deliberately monitored by using this advanced
program. Two microorganism’s proteins were chosen for this