Journal of Medicinal Chemistry
Article
overnight. The solvent was removed to dryness to give N-benzyl-2-
chloro-N-(2-chloroethyl)ethanamine hydrochloride (26, 23.78 g,
100% crude yield), which was used in the next step without further
solution of tetrahydro-2H-pyran-4-carbonitrile (28, 4.85 g, 43.6
mmol) in dry THF (41 mL), cooled at −78 °C, LDA solution
(30.5 mL, 1.5 M in a mixture of THF/ethylbenzene/heptane, 45.8
mmol) was added dropwise under a nitrogen atmosphere. The
mixture was stirred at −50 °C for 45 min, and then, it was cooled at
−78 °C. A solution of tert-butyl 4-oxopiperidine-1-carboxylate (29,
8.69 g, 43.6 mmol) in dry THF (5.2 mL) was added, and the reaction
mixture was stirred at −78 °C for 2 h. Then, NH4Cl saturated
aqueous solution was added, and the mixture was extracted with ethyl
acetate. The organic phases were combined, dried over MgSO4,
filtered, and concentrated to dryness. The residue was purified by
flash chromatography on silica gel, gradient DCM to MeOH/DCM
(10:90), to give tert-butyl 4-(4-cyanotetrahydro-2H-pyran-4-yl)-4-
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purification. H NMR (400 MHz, CDCl3): δ 7.76−7.63 (m, 2H),
7.57−7.42 (m, 3H), 4.38 (s, 2H), 4.06 (t, J = 6.8 Hz, 4H), 3.47 (t, J =
6.8 Hz, 4H). HPLC-MS: m/z = 232 [M + H]+.
Step 2. Compound 26 (10.37 g, 38.61 mmol) was added to a
solution of ethyl 1-aminocyclopropanecarboxylate hydrochloride (6.4
g, 38.6 mmol) and NaHCO3 (17.5 g, 208.5 mmol) in EtOH (200
mL). The reaction mixture was stirred at 80 °C for 4 h and overnight
at rt. The solvent was concentrated, and the crude product was
diluted with ethyl acetate and water. The layers were separated, and
the organic layer was dried over Na2SO4, filtered, and concentrated.
The crude residue was purified by flash chromatography on silica gel
and eluents CH/ethyl acetate (100:0 to 0:100) to give ethyl 1-(4-
benzylpiperazin-1-yl)cyclopropanecarboxylate (2.86 g, 24% yield).
HPLC-MS: m/z = 289 [M + H]+. The previous compound (2.36 g,
8.21 mmol) was dissolved in EtOH (100 mL), and KOH (5.4 g, 82.07
mmol) in EtOH (50 mL) was added. The solution was heated at 120
°C for 5 h. The reaction mixture was cooled at 0 °C, and acetic acid
(4.7 mL, 82.07 mmol) was added. After stirring for 10 min, the
mixture was concentrated under vacuum. The residue was treated
with ethyl acetate, and the solid thus obtained was filtered and washed
several times with water. Then, it was dried in vacuo to afford 1-(4-
benzylpiperazin-1-yl)cyclopropanecarboxylic acid (27) as a beige
1
hydroxypiperidine-1-carboxylate (30, 7.11 g, 53% yield). H NMR
(400 MHz, CDCl3): δ 4.21−3.95 (m, 4H), 3.72 (td, J = 2.5, 12.0 Hz,
2H), 3.03 (t, J = 12.3 Hz, 2H), 1.91−1.71 (m, 6H), 1.71−1.60 (m,
2H), 1.46 (s, 9H). HPLC-MS: m/z = 255 [M + H − 56]+ (−tBu, Boc
fragmentation).
Step 2. To a solution of compound 30 (6.10 g, 19.7 mmol) in
toluene (71 mL), (methoxycarbonylsulfamoyl)triethylammonium
hydroxide inner salt (“Burgess reagent”, 7.03 g, 29.5 mmol) was
added, and the mixture was heated at 90 °C overnight under a
nitrogen atmosphere. It was then cooled to rt, and water and DCM
were added. The aqueous phase was back-extracted with DCM. The
organic phases were combined, washed with saturated NaHCO3
solution, dried over Na2SO4, filtered, and concentrated to dryness
to give tert-butyl 4-(4-cyanotetrahydro-2H-pyran-4-yl)-5,6-dihydro-
pyridine-1(2H)-carboxylate (31, 6.14 g crude product, 5.75 g
theoretical weight; quantitative yield). 1H NMR (400 MHz,
CDCl3): δ 5.78 (br s, 1H), 4.06−3.94 (m, 4H), 3.84−3.73 (m,
2H), 3.54 (t, J = 5.6 Hz, 2H), 2.27−2.18 (m, 2H), 1.90−1.77 (m,
4H), 1.48 (s, 9H). HPLC-MS: m/z = 237 [M + H − 56]+ (−tBu, Boc
fragmentation).
1
solid (1.76 g, 82% yield). H NMR (400 MHz, CD3OD): δ 7.60−
7.37 (m, 5H), 4.19 (s, 2H), 3.37−3.17 (m, 4H), 3.13−2.94 (m, 4H),
1.27 (q, J = 3.8 Hz, 2H), 0.95 (q, J = 3.7 Hz, 2H). HPLC-MS: purity
100%, m/z = 261 [M + H]+.
Step 3. N-[(Dimethylamino)-1H-1,2,3-triazolo-[4,5-b]pyridin-1-
ylmethylene]-N-methylmethanaminium hexafluorophosphate N-
oxide (HATU, 6.3 g, 17 mmol), TEA (4.2 mL, 30 mmol), and
ammonium bicarbonate (1.19 g, 15 mmol) were added to a solution
of 27 (12.7 g, 15.07 mmol) in DMF (100 mL) at 0 °C, and the
mixture was stirred at rt for 2 days. The reaction mixture was
partitioned between water and ethyl acetate/Et2O (1/1), and the
combined organic layers were washed twice with water, dried over
MgSO4, filtered, and concentrated to afford 1-(4-benzylpiperazin-1-
yl)cyclopropanecarboxamide (1.75 g, 45% yield). HPLC-MS: m/z =
260 [M + H]+. A solution of LiAlH4 (1 M in THF, 13.5 mL, 13.5
mmol) was added to a −10 °C cooled solution of the previous
compound (1.75 g, 6.76 mmol) in dry THF (20 mL). The reaction
mixture was stirred at this temperature for 5 h, allowed to reach rt,
and stirred overnight. The suspension thus obtained was cooled down
to 0 °C, and diluted aqueous NaOH was added. The mixture was
filtered and rinsed with ethyl acetate. The filtrate was washed with
H2O, and the combined organic layers were dried over Na2SO4,
filtered, and concentrated to give (1-(4-benzylpiperazin-1-yl)-
cyclopropyl)methanamine as an oil (0.9 g, 54% yield). HPLC-MS:
m/z = 246 [M + H]+. A portion of this compound (665 mg, 2.7
mmol), 2-bromo-6-(trifluoromethyl)pyridine (12-1, 735 mg, 3.26
mmol), Pd2(dba)3 (101.2 mg, 0.163 mmol), BINAP (124 mg, 0.136
Step 3. A mixture of compound 31 (6.14 g crude, 19.7 mmol) and
palladium (1.23 g, 5% wt on charcoal, wet) in EtOH (115 mL) was
stirred at rt under 1 bar of H2 overnight. Then, the solids were filtered
off over a pad of Celite, and the solvent was evaporated to dryness.
The residue was purified by flash chromatography, silica gel, gradient
DCM to MeOH/DCM (10:90), to give tert-butyl 4-(4-cyanotetrahy-
dro-2H-pyran-4-yl)piperidine-1-carboxylate (32, 4.04 g, 70% yield).
1H NMR (400 MHz, CDCl3): δ 4.38−4.12 (m, 2H), 4.05−3.93 (m,
2H), 3.71 (td, J = 1.9, 12.4 Hz, 2H), 2.65 (t, J = 11.4 Hz, 2H), 1.88
(dd, J = 2.0, 13.5 Hz, 2H), 1.80 (d, J = 10.9 Hz, 2H), 1.60 (ddd, J =
4.5, 10.0, 17.0 Hz, 2H), 1.46 (s, 9H), 1.50−1.34 (m, 3H). HPLC-MS:
purity 91%, m/z = 239.1 [M + H − 56]+ (−tBu, Boc fragmentation).
Step 4. To a solution of compound 32 (4.0 g, 13.6 mmol) in DCM
(40 mL), TFA (10.4 mL, 136 mmol) was added, and the reaction
mixture was stirred at rt for 1 h. The solvent was evaporated to
dryness to give 4-(piperidin-4-yl)tetrahydro-2H-pyran-4-carbonitrile
trifluoroacetate (7.18 g, 4.19 g theoretical weight, quantitative yield).
This crude compound and benzaldehyde (1.3 mL, 17.7 mmol) were
dissolved in dry THF (92 mL), and AcOH (1.73 mL, 30.2 mmol) was
added. The mixture was stirred at rt for 15 min, and then, sodium
triacetoxyborohydride (7.99 g, 40.8 mmol) was added in portions.
The resulting mixture was stirred at rt overnight. Then, concentrated
NH4OH (50 mL) was carefully added, and it was extracted with ethyl
acetate. The organic phases were combined, washed with brine, dried
over MgSO4, filtered, and concentrated to dryness. The residue was
purified by flash chromatography, silica gel, gradient DCM to MeOH/
DCM (25:75), to give 4-(1-benzylpiperidin-4-yl)tetrahydro-2H-
t
mmol), and BuOK (395 mg, 3.52 mmol) were added to a Schlenk
tube, that was evacuated and backfilled with argon (three cycles).
Then, anydrous THF (15 mL) was added, and the reaction mixture
was stirred at 50 °C overnight. The solvents were evaporated, and the
residue was dissolved in ethyl acetate and aqueous saturated NaHCO3
solution. The aqueous layer was extracted with ethyl acetate, and the
combined organic layers were dried over Na2SO4, filtered, and
concentrated. The crude product was purified by flash chromatog-
raphy on silica gel, gradient CH/ethyl acetate from (100:0) to
(0:100), to give N-((1-(4-benzylpiperazin-1-yl)cyclopropyl)methyl)-
6-(trifluoromethyl)pyridin-2-amine (13-4a) as a solid (628 mg, 53%
1
pyran-4-carbonitrile (33, 1.75 g, 45% yield). H NMR (400 MHz,
CDCl3): δ 7.34−7.29 (m, 4H), 7.28−7.22 (m, 1H), 3.97 (ddt, J = 1.0,
4.6, 12.3 Hz, 2H), 3.71 (td, J = 1.9, 12.3 Hz, 2H), 3.50 (s, 2H), 3.06−
2.93 (m, 2H), 1.93 (td, J = 2.4, 11.9 Hz, 2H), 1.86 (dq, J = 2.5, 13.5
Hz, 2H), 1.81−1.72 (m, 2H), 1.65−1.50 (m, 4H), 1.31 (tt, J = 3.7,
12.1 Hz, 1H). HPLC-MS purity 98%; m/z 285 [M + H]+.
1
yield). H NMR (400 MHz, CD3OD): δ 7.48 (ddq, J = 0.7, 7.3, 8.7
Hz, 1H), 7.33−7.20 (m, 5H), 6.82 (dd, J = 0.7, 7.2 Hz, 1H), 6.64 (dq,
J = 0.7, 8.6 Hz, 1H), 3.54 (s, 2H), 3.48 (s, 2H), 2.84 (t, J = 4.9 Hz,
4H), 2.50−2.32 (m, 4H), 0.68−0.62 (m, 2H), 0.62−0.54 (m, 2H).
HPLC-MS: purity 95%, m/z = 391 [M + H]+.
N-((4-(1-Benzylpiperidin-4-yl)tetrahydro-2H-pyran-4-yl)methyl)-
N-(6-(trifluoromethyl)pyridin-2-yl)propionamide (36). Step 1. To a
Step 5. Following a similar procedure to the one described in step 2
of the synthesis of compound 15r, (4-(1-benzylpiperidin-4-yl)-
tetrahydro-2H-pyran-4-yl)methanamine (34) was obtained (879 mg,
1
50% yield). H NMR (400 MHz, CDCl3): δ 7.33−7.28 (m, 4H),
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J. Med. Chem. 2021, 64, 10139−10154