194
O. Rau et al.
Arch. Pharm. Chem. Life Sci. 2008, 341, 191–195
compounds 8 and 9 with single butyl or hexyl substitu- Chemistry
ents. Thus, suggesting an a-positioned di-methyl substitu-
Bromo-naphtalen-1-yl-acetic acid ethyl ester 1i
tion to be a contributor for PPARa preference.
Dibenzoyl peroxide (0.031 g, 0.13 mmol) was added to a stirred
mixture of ethyl-2-naphtylethanoate (5 g, 23.34 mmol) and NBS
(4.98 g, 28 mmol) in abs. carbon tetrachloride (70 mL). The reac-
tion mixture was heated at reflux for 3.5 h, filtered and concen-
trated in vacuo. Purification by distillation at 128–1308C and
0.002 mbar yielded compound 1i (80%).
Based on 14 crystal structures, Pirard introduced a che-
mometrical approach to formally classify the ligand-
binding pockets of the PPARs into a pocket accepting the
acidic head group, a pocket proximal to the carboxyl
group-accepting substituents, which are a- or b-posi-
tioned and a linker region, accepting the lipophilic back-
bone, which is commonly represented by a b- or c-posi-
tioned aromatic system [17]. While the proximal pocket
is suggested to exhibit only minor contribution to recep-
tor-subtype selectivity, a left and a right distal pocket
seem to be major determinants of subtype selectivity.
This hypothesis is consistent with our experimental
observations in which a-substitution alone did not dis-
criminate between PPARa and PPARc agonism.
It is a well established concept that substitution in a-
position to the acidic head group has an impact on PPAR
activitiy. Here, we show for the first time that a system-
atic variation of the chain length of an a-alkyl substitu-
tion leads to gradual differences in the PPARa and PPARc
activation profile with an optimal induction of both
PPARa and PPARc agonism at a chain length of a butyl
and a hexyl residue.
2-(4,6-Dichloro-pyrimidin-2-ylsulfanyl)-2-methyl-propionic
acid ethyl ester 3k
LiHMDS (1.0 M, 11.23 mL) and HMPA (1.96 mL) were added to a
solution of the ester 3a (3 g, 11.23 mmol) in abs. THF (100 mL) at
–788C. After 30 min at –788C, methyl iodide (1.59 g,
11.23 mmol) was introduced. The reaction was allowed to warm
to rt (room temperature) over 3.5 h, then cooled to –788C before
a second equiv of LiHMDS and HMPA was added. The reaction
was allowed to warm up to rt slowly and was stirred over night
for 18 h. The resulting solution was then partitioned between
EtOAc (100 mL) and water (100 mL). The organic phase was
washed with water (100 mL), saturated NaHCO3 solution
(100 mL) and once more with water (100 mL), dried over magne-
sium sulphate, filtered, and concentrated in vacuo. Purification
by silica gel chromatography with n-hexane/ethyl acetate (25 : 1)
gave 3k as pale yellow oil (52%).
2-[4-Chloro-6-(2,3-dimethyl-phenylamino)-pyrimidin-2-
ylsulfanyl]-hexanoic acid 8
We gratefully acknowledge Mona Tawab for carefully revi-
sing the manuscript.
The authors have declared no conflict of interest.
Mp. = 120–1218C. 1H-NMR (300.13 MHz, (CD3)2SO): d 0.80–0.83
(m, 3H, CH3 (n-Bu)), 1.21–1.38 (m, 4H, CH2 (n-Bu)), 1.68–1.78 (m,
2H, CH2 (n-Bu)), 2.05 (s, 3H, Ph-2-CH3), 2.26 (s, 3H, Ph-3-CH3), 4.19 (s
(br), 1H, S-CH), 6.21 (s, 1H, Pyr-5-H), 7.06–7.10 (m, 3H, Ph-4,5,6-H),
9.51 (s (br), 1H, NH), 12.82 (s (br), 1H, COOH). 13C-NMR
(50.32 MHz, (CD3)2SO): d 13.67 (Ph-2-CH3), 14.00 (CH3 (n-Bu)), 20.07
(Ph-3-CH3), 21.60 (CH2 (n-Bu)), 28.65 (CH2 (n-Bu)), 31.71 (CH2 (n-Bu)),
46.68 (S-CH), 98.94 (Pyr-5-C), 124.02 (Ph-6-C), 125.69 (Ph-4-C),
127.85 (Ph-5-C), 132.41 (Ph-2-C), 135.63 (Ph-3-C), 137.60 (Ph-1-C),
157.73 (Pyr-4-C), 162.17 (Pyr-2-C), 169.63 (Pyr-6-C), 172.47 (COOH).
MS (ESI–): m/e = 377.9 [M – 1]. Anal. (C18H22ClN3O2S) C, H, N: Anal.
Calcd. C 56.91, H 5.84, N 11.06; Found C 57.09, H 5.86; N 10.87.
Experimental
General
All commercially available chemicals and solvents are of reagent
grade and were used without further purification unless speci-
fied otherwise. Syntheses of compounds 1i and 3k were carried
out under argon atmosphere. Melting points were determined
on a Bꢀchi-Tottoli melting point apparatus (Bꢀchi Labortechnik,
2-[4-Chloro-6-(2,3-dimethyl-phenylamino)-pyrimidin-2-
ylsulfanyl]-octanoic acid 9
1
1
Flawil, Switzerland) and are uncorrected. H-NMR and 13C-NMR
Mp. = 958C. H-NMR (300.13 MHz, (CD3)2SO): d 0.83 (t, 3H, CH3
spectras were measured in CDCl3 or DMSO-d6 on a Bruker ARX
300 (1H-NMR) and AC 200 E (13C-NMR) spectrometer (Bruker,
Rheinstetten, Germany). Chemical shifts are reported in parts
per million (ppm) using tetramethylsilane (TMS) as internal
standard. Mass spectra were obtained on a Fisons Instruments
VG Platform II spectrometer measuring in the positive or nega-
tive ion mode (ESI–MS system). Column chromatography was
carried out on Merck silica gel 60 (Merck, Darmstadt, Germany).
Elemental analysis has been performed by the Microanalytical
Laboratory of the Institute of Organic Chemistry and Chemical
Biology, University of Frankfurt, on a Foss Heraeus CHN–O–
rapid elemental analyzer (Heraeus, Hanau, Germany).
(Hex), J = 6.3 Hz), 1.15–1.22 (m, 8H, CH2 (Hex)), 1.68–1.78 (m, 2H,
CH2 (Hex)), 2.05 (s, 3H, Ph-2-CH3), 2.26 (s, 3H, Ph-3-CH3), 4.21 (t (br),
1H, S-CH), 6.21 (s, 1H, Pyr-5-H), 7.07–7.11 (m, 3H, Ph-4,5,6-H), 9.51
(s (br), 1H, NH), 12.85 (s (br), 1H, COOH). 13C-NMR (50.32 MHz,
(CD3)2SO): d 13.79 (Ph-2-CH3), 13.94 (CH3 (Hex)), 20.00 (Ph-3-CH3),
21.85 (CH2 (Hex)), 26.34 (CH2 (Hex)), 28.03 (CH2 (Hex)), 30.89 (CH2
(Hex)), 31.91 (CH2 (Hex)), 46.89 (S-CH), 98.81 (Pyr-5-C), 123.94 (Ph-6-
C), 125.62 (Ph-4-C), 127.78 (Ph-5-C), 132.30 (Ph-2-C), 135.58 (Ph-3-C),
137.53 (Ph-1-C), 157.67 (Pyr-4-C), 162.11 (Pyr-2-C), 169.58 (Pyr-6-C),
172.42 (COOH). MS (ESI–): m/e = 406.1 [M – 1]. Anal. Calcd.
(C20H26ClN3O2S) C, H, N: Calc. C 58.88, H 6.42, N 10.30; Found C
58.63, H 6.32; N 10.24.
i 2008 WILEY-VCH Verlag GmbH & Co. KGaA, Weinheim