Trigonal Pyramidal Iron
tive of substrate binding at the central (“belt”) iron atoms.9
The most convincing evidence in this regard is the fact that
reducing the size of the amino acid Val-70 allows binding
of substituted acetylenes with substituents that engage in
hydrogen bonding to His-195 (residue numbering from the
a subunit of A. Vinelandii protein).10,11 Because acetylene
reduction is inhibited by N2 in these mutants, this binding
site is probably the same as that for N2.
Because of the likely role of the six belt iron atoms of the
FeMoco in catalysis, chemists desire to understand them in
detail. In the isolated, reduced cofactor, they exist as part of
a mixed-valence Fe2+/Fe3+ cluster (MN),12 and the crystal
structures invariably show that the geometry of each belt
iron atom is distorted away from tetrahedral, with the iron
atom near the plane of the three sulfur ligands. The
Mo¨ssbauer parameters of the belt iron atoms suggests strong
bonding to the three bridging sulfides, but a weak ionic
interaction with X.13 We have speculated that further
reduction of the cofactor could disrupt the Fe-X interaction,
leading to N2 binding.14-16 Computational studies have not
reached a consensus regarding the structural effects of
reduction on the core of the cofactor.7 Spectroscopic studies
using extended X-ray absoption fine structure (EXAFS)
indicate that the aVerage Fe-Fe distance contracts upon
reduction but (because of the complexity of the cofactor)
Figure 1. Structure of the iron-molybdenum cofactor of molybdenum-
iron nitrogenase.
do not give more detailed insight into bond forming/
breaking.17 The geometry, distortions, and cooperative move-
ments of the iron atoms in the FeMoco are likely to play an
important role in the observed reactivity.
Structurally Analogous Synthetic Complexes. Numerous
synthetic iron complexes have been studied in order to
provide a comparative basis for understanding the iron-
molybdenum cofactor.18 However, no detailed analysis of
the stereochemistry of its metal atoms has been undertaken,
and that is a relevant piece of information that must be taken
into account when trying to mimic the chemical activity of
the active site in model complexes. We thus need to focus
both in the local coordination geometry of the Fe atoms (that
can be modeled by mononuclear compounds) and on the
global shape of the Fe7Mo entity that can be modeled with
polynuclear compounds. Because the belt iron atoms are
coordinated to three bridging sulfides, in addition to a weak
interaction with X, models of the local coordination geometry
should include three strong donor ligands and one weaker
bond. Complexes of this type are rare in the synthetic
literature because iron(II) chemistry is dominated by com-
plexes with four or more strong donor ligands.
Iron-sulfur clusters make up one class of candidate
compounds, and they are well known in synthetic chemis-
try.19 In Fe4(µ3-S)4 clusters, iron atoms are coordinated by
three sulfides, and the fourth position is typically occupied
by a strongly bound ligand (e.g., chloride). In some cases,
use of phosphines has led to “prismane” and “basket” clusters
in which some iron atoms have a geometry that approach a
trigonal pyramid.20 Power has also synthesized a tris-
thiolatoiron(II) complex with no strong fourth donor but
which may have an agostic interaction of a C-H bond to
the iron.21 Another interesting family is the octanuclear M2-
Fe6 complexes, with M ) Mo or V and sulfido or thiolato
bridges.22 In these clusters, the Fe atoms are four-coordinate
and the global topology resembles that of FeMoco, with two
M atoms capping an Fe6 core.
(7) (a) Dance, I. Chem. Commun. 2003, 324-325. (b) Hinnemann, B.;
Norskøv, J. K. J. Am. Chem. Soc. 2003, 125, 1466-1467. (c) Lovell,
T.; Liu, T.; Case, D. A.; Noodleman, L. J. Am. Chem. Soc. 2003,
125, 8377-8383. (d) Schimpl, J.; Petrilli, H. M.; Blo¨chl, P. E. J. Am.
Chem. Soc. 2003, 125, 15772-15778. (e) Vrajmasu, V.; Munck, E.;
Bominaar, E. L. Inorg. Chem. 2003, 42, 5974-5988. (f) Huniar, U.;
Ahlrichs, R.; Coucouvanis, D. J. Am. Chem. Soc. 2004, 126, 2588-
2601. (g) Cao, Z.; Zhou, Z.; Wan, H.; Zhang, Q. Int. J. Quantum
Chem. 2005, 103, 344-353.
(8) (a) Chatt, J.; Dilworth, J. R.; Richards, R. L. Chem. ReV. 1978, 78,
589-625. (b) Laplaza, C. E.; Cummins, C. C. Science 1995, 268,
861-3. (c) Yandulov, D. V.; Schrock, R. R. Science 2003, 301, 76-
78.
(9) (a) Christiansen, J.; Dean, D. R.; Seefeldt, L. C. Annu. ReV. Plant
Physiol. Plant Mol. Biol. 2001, 52, 269-295. (b) Seefeldt, L. C.;
Dance, I. G.; Dean, D. R. Biochemistry 2004, 43, 1401-1409. (c)
Dos Santos, P. C.; Igarashi, R. Y.; Lee, H.-I.; Hoffman, B. M.; Seefeldt,
L. C.; Dean, D. R. Acc. Chem. Res. 2005, 38, 208-214.
(10) Igarashi, R. Y.; Dos Santos, P. C.; Niehaus, W. G.; Dance, I. G.; Dean,
D. R.; Seefeldt, L. C. J. Biol. Chem. 2004, 279, 34770-34775.
(11) Similar mutations have enabled the trapping of some substrates on
the FeMoco: (a) Barney, B. M.; Laryukhin, M.; Igarashi, R. Y.; Lee,
H.-I.; Dos Santos, P. C.; Yang, T.-C.; Hoffman, B. M.; Dean, D. R.;
Seefeldt, L. C. Biochemistry 2005, 44, 8030-8037. (b) Barney, B.
M.; Yang, T.-C.; Igarashi, R. Y.; Dos Santos, P. C.; Laryukhin, M.;
Lee, H.-I.; Hoffman, B. M.; Dean, D. R.; Seefeldt, L. C. J. Am. Chem.
Soc. 2005, 127, 14960-14961.
(17) Christiansen, J.; Tittsworth, R. C.; Hales, B. J.; Cramer, S. P. J. Am.
Chem. Soc. 1995, 117, 10017-24.
(18) Lee, S. C.; Holm, R. H. Proc. Natl. Acad. Sci. U.S.A. 2003, 100, 3595-
3600.
(19) Holm, R. H. Electron Transfer: Iron-Sulfur Clusters. In ComprehensiVe
Coordination Chemistry 2; McCleverty, J., Meyer, T. J., Eds.;
Elsevier: Oxford, 2004; Vol. 8, pp 61-90.
(20) Snyder, B. S.; Holm, R. H. Inorg. Chem. 1990, 29, 274-279 and
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(12) Yoo, S. J.; Angove, H. C.; Papaefthymiou, V.; Burgess, B. K.; Mu¨nck,
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(14) Holland, P. L. Can. J. Chem. 2005, 83, 296-301.
(15) Evidence for flexibility of the FeMoco comes from EPR studies:
George, G. N.; Prince, R. C.; Bare, R. E. Inorg. Chem. 1996, 35, 434-
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(16) Computational studies support flexibility of the FeMoco: (a) Schimpl,
J.; Petrilli, H. M.; Blo¨chl, P. E. J. Am. Chem. Soc. 2003, 125, 15772-
15778. (b) Huniar, U.; Ahlrichs, R.; Coucouvanis, D. J. Am. Chem.
Soc. 2004, 126, 2588-2601. (c) Igarashi, R. Y.; Dos Santos, P. C.;
Niehaus, W. G.; Dance, I. G.; Dean, D. R.; Seefeldt, L. C. J. Biol.
Chem. 2004, 279, 34770-34775. (d) Dance, I. J. Am. Chem. Soc.
2004, 126, 11852-11863. (e) Dance, I. J. Am. Chem. Soc. 2005, 127,
10925-10942. (f) Ka¨stner, J.; Hemmen, S.; Blo¨chl, P. E. J. Chem.
Phys. 2005, 123, 074306/1-07430.6/8. (g) Dance, I. Biochemistry
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(21) (a) MacDonnell, F. M.; Ruhlandt-Senge, K.; Ellison, J. J.; Holm, R.
H.; Power, P. P. Inorg. Chem. 1995, 34, 1815-22. (b) Evans, D. J.;
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Inorganic Chemistry, Vol. 46, No. 1, 2007 61