468
N.K. Paul et al. / European Journal of Medicinal Chemistry 87 (2014) 461e470
þ
2
4
83 nm. EI HRMS: calcd. for C27
37.1742.
23
H N
3
O
3
, 437.1739 [M ], found:
1H,J ¼ 9 Hz, AreH), 7.33e7.48 (m, 7H, AreH), 7.78 (s, 2H, AreH),
13
8.77e8.79 (m, 4H, AreH). C NMR:
d 47.29, 112.78, 113.05, 115.29,
1
24.17, 131.44, 135.34, 144.90, 142.08, 150.93, 151.34, 165.97, 186.53.
ꢂ1
3.3.5. (3E,5E)-1-((E)-3-(4-Nitrophenyl)acryloyl)-3,5-bis(pyridin-4-
IR (Nujol):
n
3170, 2953, 2851, 1656, 1600, 1460, 1376, 1154 cm . UV
ylmethylene)piperidin-4-one (12)
(MeOH):
l
max 272 nm. APCI HRMS: calcd. for C24 , 398.1505
19 3 3
H N O
Yield: 41%; m.p. 91e94 C. 1H NMR(CDCl
ꢄ
): d 4.94 (bs, 4H,
[MþH], found: 398.1501.
3.4. Biological evaluations
3.4.1. Cytotoxicity evaluations
3
NHeCH
2
), 6.48e6.53 (d, 1H, J ¼ 15.2 Hz, C]CH), 7.24e7.27 (d, 2H,
J ¼ 8.7 Hz, AreH), 7.29e7.34 (m, 4H, AreH), 7.56e7.61 (d, 1H,
J ¼ 15.6 Hz, AreH), 7.79 (s, 2H, C]CH), 8.16e8.19 (d, 2H, J ¼ 8.7 Hz,
1
3
AreH), 8.77e8.79 (m, 4H, AreH). C NMR:
d 47.65, 120.04, 124.15,
1
1
1
24.58, 128.56, 135.09, 140.83, 141.87, 141.99, 148.78, 150.96, 165.14,
86.17. IR (KBr Disc): 2925, 1734, 1684, 1675, 1576, 1521, 1429,
384, 1343 cm . UV (MeOH): max 204, 299 nm. ESI-HRMS: calcd.
for C26
, 453.1596 [MþH], found: 453.1565.
The Molt4/C8, CEM and L1210 assays were conducted using a
literature methodology [34] and the resulting data are reported in
Table 1. The human tumor cell line screen at the National Cancer
Institute (NCI) was undertaken by a reported procedure [36] using
n
ꢂ1
l
21 4 4
H N O
57 or 59 tumor cell lines. The data are summarized in Table 2.
3.3.6. (3E,5E)-1-((E)-3-(3,4-Dichlorophenyl)acryloyl)-3,5-
bis(pyridin-4-ylmethylene) piperidin-4-one (13)
3.4.2. Culture of human fibroblasts
ꢄ
1
Human fibroblasts or WI-38 cells (ATCC® CCL-75™) were ob-
tained from Cederlane Labs (Burlington, ON, Canada) and cultured
according to the supplier's instructions. The cells were maintained
Yield: 42%; m.p. 184e186 C. H NMR(CDCl
NHeCH
), 6.36e6.51 (m, 4H, AreH, ¼CH), 7.34e7.41 (m, 5H, AreH,
C]CH), 7.76 (s, 2H, C]CH), 8.75e8.77 (m, 4H, AreH). C NMR:
44.91, 117.50, 124.17, 126.83, 129.69, 131.30, 133.67, 134.77, 135.17,
3
): d 4.91 (bs, 4H,
2
13
2
ꢄ
d
in 75 cm culture flasks at a temperature of 37 C in a humidified
1
42.17, 151.02, 165.49, 186.28. IR (KBr Disc):
n
3050, 2925, 1645,
incubator (VWR International, Mississauga, ON) supplied with 95%
air and 5% CO . WI-38 cells were supplied with DMEM medium,
2
ꢂ1
1619, 1600, 1545, 1416, 1384, 823, 759, 597, 522 cm . UV (MeOH):
l
max 204, 300 nm. ESI HRMS: calcd. for C26
H19Cl
2
N
3
O
2, 476.0933
supplemented with 10% FBS and 100 mg/L of penicillin and strep-
tomycin. The growth medium of cultured cells was changed every
þ
[M ], found: 476.0910 and 478.0908.
4
8 h.
3.3.7. (3E,5E)-1-((E)-3-(3,4-Dimethoxyphenyl)acryloyl)-3,5-
bis(pyridin-4-ylmethylene) piperidin-4-one (14)
3.4.3. Topoisomerase assays
ꢄ
1
Yield: 67%; m.p. 82e86 C. H NMR(CDCl
.74 (s, 3H, OCH ), 4.95 (bs, 4H, NHeCH
AreH, ¼CH), 7.29e7.34 (m, 5H, AreH, C]CH), 7.78 (s, 2H, C]CH),
3
):
d
3.60 (s, 3H, OCH
3
),
All test compounds were assayed at a concentration of 50 mM
3
3
2
), 6.75e6.86 (m, 4H,
using a commercial kit, (Topogen Inc, Columbus, OH). The com-
pounds were challenged against 4 units of topoisomerase enzyme
using pHOT1 DNA as the substrate. The assay is based upon eval-
uating the formation of DNA cleavage products, primarily linearized
DNA (interfacial poisons) and/or supercoiled product (catalytic
inhibitory compounds). All the preparatory and analysis steps were
followed according to the manufacturer's instructions and all
samples were loaded directly onto a 2% agarose gel in 1x TBE (Tris/
Borate/EDTA) running buffer. Gels were run until the dye front was
about 80% down the gel and then stained using Gel red nucleic acid
dye (VWR, ON, Canada). In addition to VP16 (etoposide), sorafenib
and cisplatin were also used as drug standards in the analysis. The
DNA bands were visualized by placing gels on a UV sample tray,
followed by exposure to UV light using gel Doc™ EZ System (Biorad,
ON, Canada). After general screening of all compounds, the active
compounds were run at different concentrations to obtain IC50
values for their topoisomerase II inhibition potential. The band-
wise topoisomerase inhibition was calculated using Gel Doc™
EZ's software SYBR safe by measuring the relative front of each
band with an exposure time of 0.25 s through a UV trans-
illumination mode.
1
3
8
1
1
1
.73e8.75 (m, 4H, AreH). C NMR:
15.50, 116.69, 117.26, 124.25, 124.33, 135.35, 140.83, 142.21, 150.80,
53.30, 153.80, 166.84, 186.25. IR (Nujol): 3025, 2955, 2922, 1658,
637, 1591, 1579, 1460, 1376 cm . EI-HRMS: calcd. for C28
d 48.02, 56.11, 56.15, 112.61,
n
ꢂ1
25 3 4
H N O ,
þ
4
67.1845 [M ], found: 467.1847.
3.3.8. (3E,5E)-1-((E)-3-(Benzo[d][1,3]dioxol-5-yl)acryloyl)-3,5-
bis(pyridin-4-ylmethylene) piperidin-4-one (15)
ꢄ
1
Yield: 45%; m.p. 177e180 C. H NMR(CDCl
3
): d 4.90 (bs, 4H,
NHeCH ), 6.02 (s, 2H, OeCH
2
2
eO), 6.18e6.23 (d, 1H, J ¼ 15.3 Hz, C]
CH), 6.54 (s, 1H, AreH), 6.74e6.77 (m, 2H, AreH), 7.29e7.34 (m, 4H,
AreH), 7.48e7.53 (d, 1H, J ¼ 15 Hz, C]CH), 7.76 (s, 2H, C]CH),
13
8
.76e8.78 (m, 4H, AreH). C NMR: d 47.40, 102.04, 106.38, 108.96,
1
1
1
13.44, 124.49, 129.15, 135.46, 140.10, 144.77, 141.99, 148.71, 149.97,
50.98, 165.30, 186.60. IR (KBr Disc): 3070, 3049, 2970, 1678, 1647,
593,1260,1245, 839, 698, 509 cm . UV (MeOH): max 205, 235, 292.
, 451.1537 [M ], found: 451.1532.
n
ꢂ1
l
þ
21 3 4
EI-HRMS: calcd. for C27H N O
3.3.9. (3E,5E)-1-((E)-3-(3,4,5-Trimethoxyphenyl)acryloyl)-3,5-
bis(pyridin-4-ylmethylene) piperidin-4-one (16)
ꢄ
1
Yield: 62%; m.p. 198e200 C. H NMR(CDCl
OCH ), 3.86 (s, 3H, OCH ), 4.95 (bs, 4H, NHeCH ), 6.33e6.38 (d, 1H,
5 Hz, C]CH), 6.46 (s, 2H, AreH), 7.32e7.35 (m, 4H, AreH),
.51e7.56 (d, 1H, J ¼ 15 Hz, C]CH), 7.79 (s, 2H, AreH), 8.75e8.77
3
):
d
3.78 (s, 6H,
3.4.4. Antioxidant activity assays
3
3
2
3.4.4.1. Ferric reducing ability of a plasma (FRAP) assay. The FRAP
assay was performed according to the method described earlier [8].
Briefly, the FRAP working reagent was prepared by adding 300 mM
acetate buffer (pH 3.6), 10 mM TPTZ solution and 20 mM ferric
1
7
(
13
m, 4H, AreH). C NMR:
23.21, 129.42, 134.53, 140.25, 141.33, 144.09, 149.96, 153.06, 165.19,
85.23. IR (KBr Disc): 3025, 2945, 2922, 1683, 1634, 1591, 1504,
455, 1124 cm . ESI HRMS: calcd. for C29
, 498.2029 [MþH]
d 44.66, 55.81, 60.38, 105.00, 113.89,
1
chloride in the ratio of 10:1:1. The test compounds (20
mL) and FRAP
1
n
working reagent (180 L) were added to 96-well microplates and
m
ꢂ1
1
H
27
N
3
O
5
absorbance was read at 590 nm using the FLUOstar OPTIMA plate
reader (BMG Labtech, Durham, NC, USA). The anti-oxidant capacity
þ
,
found: 498.2012.
ꢂ1
results were expressed as
mM TE L of solution.
3.3.10. (3E,5E)-1-((E)-3-(Furan-2-yl)acryloyl)-3,5-bis(pyridin-4-
ylmethylene)piperidin-4-one (17)
3.4.4.2. Oxygen radical absorbance capacity (ORAC) assay. The
ORAC assay was performed according to the method described
earlier [8]. Briefly, 35 mL of trolox standard or sample, 130 mL of
Yield: 40%; m.p. 93e96 C. 1H NMR(CDCl
NHeCH ), 6.35e6.40 (d, 1H, 15 Hz, C]CH), 6.91e6.94 (d,
ꢄ
):
d
4.91 (bs, 4H,
3
2