10.1002/chem.201604831
Chemistry - A European Journal
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step of 11 or 13 data points, using the Savitzky–Golay function[33]
.
[4] P. Moscarelli, F. Boraldi, B. Bochicchio, A. Pepe, A. M. Salvi and D.
Quaglino, Matrix Biol 2014, 36, 15-27.
Second derivatives of the spectra were obtained using a step of 13
datapoints to identify discrete absorption bands that make up the
complex amide profiles. Quantitative analysis of the individual component
bands of amide I was achieved by using the peak fitting module
implemented in the Origins ® Software (Microcalc Inc.). In the curve
fitting procedure, the Voigt peak shape has been used for all peaks. The
Voigt shape is a combination of the Gaussian and Lorentzian peak
shapes and accounts for the broadening present in the FT-IR spectrum.
[5] O. Seitz, Chembiochem 2000, 1, 214-246.
[6] a) J. Huang and A. Heise, Chem Soc Rev 2013, 42, 7373-7390; b) M.
Delbianco, P. Bharate, S. Varela-Aramburu and P. H. Seeberger, Chem
Rev 2016, 116, 1693-1752; c) M. Y. Mistou, I. C. Sutcliffe and N. M.
van Sorge, FEMS Microbiol Rev 2016, 40, 464-479.
[7] a) T. Buskas, S. Ingale and G. J. Boons, Glycobiology 2006, 16, 113R-
136R; b) H. Hojo and Y. Nakahara, Biopolymers 2007, 88, 308-324.
[8] a) Q. Y. Hu, F. Berti and R. Adamo, Chem Soc Rev 2016, 45, 1691-1719;
b) J. M. Langenhan and J. S. Thorson, Current Organic Synthesis 2005,
2, 59-81.
Atomic force microscopy (AFM)
[9] a) S. Ramesh, P. Cherkupally, T. Govender, H. G. Kruger, F. Albericio and
B. G. de la Torre, Org Lett 2015, 17, 464-467; b) J. Kalia and R. T.
Raines, Angew Chem Int Ed Engl 2008, 47, 7523-7526.
[10] H. C. Kolb, M. G. Finn and K. B. Sharpless, Angew Chem Int Ed Engl
2001, 40, 2004-2021.
Ten microliters of the suspension were deposited on Silicon (100) wafer
substrate (Aldrich, Saint Louis, Mo, USA). The silicon wafers were
cleaned by using a two-solvent method consisting in the immersion of Si
wafer in warm acetone bath for a period of 10 min. Then a methanol bath
for a period of 5 min immediately followed with MilliQ water rinses.
Samples were stored in a Petri dish and air-dried overnight at room
temperature. Each sample was observed at room temperature by Atomic
Force Microscope (Park System XE-120). Data acquisition was carried
out in intermittent contact mode at scan rates between 0.2 and 1 Hz,
using rectangular Si cantilevers (TAP300Al-G, Budget Sensors) having
the radius of curvature less than 10 nm and with the nominal resonance
frequency and force constant of 300 kHz and 40 N m-1, respectively.
[11] L. M. Campos, K. L. Killops, R. Sakai, J. M. J. Paulusse, D. Damiron, E.
Drockenmuller, B. W. Messmore and C. J. Hawker, Macromolecules
2008, 41, 7063−7070.
[12] A. Dondoni, A. Massi, P. Nanni and A. Roda, Chemistry 2009, 15, 11444-
11449.
[13] K. Griesbaum, Angew Chem Int Ed Engl 1970, 9, 273-287.
[14] J. R. Kramer and T. J. Deming, J Am Chem Soc 2012, 134, 4112-4115.
[15] a) W. Chen, L. Gu, W. Zhang, E. Motari, L. Cai, T. J. Styslinger and P. G.
Wang, ACS Chem Biol 2011, 6, 185-191; b) S. Sarkar, S. A. Lombardo,
D. N. Herner, R. S. Talan, K. A. Wall and S. J. Sucheck, J Am Chem
Soc 2010, 132, 17236-17246; c) S. Sarkar, A. C. Salyer, K. A. Wall and
S. J. Sucheck, Bioconjug Chem 2013, 24, 363-375; d) P. Karmakar, K.
Lee, S. Sarkar, K. A. Wall and S. J. Sucheck, Bioconjug Chem 2016, 27,
110-120.
Transmission Electron Microscopy (TEM)
Twenty microliters of the suspension were deposited onto carbon coated
copper grids. Negative staining was performed by applying few drops of
1% uranyl acetate in MilliQ water used to increase the contrast and the
electron density of the samples. After air-drying, grids were observed by
transmission electron microscopy (Fei Tecnai G2 20 Twin) operating at
100 kV.
[16] S. Balzaretti, V. Taverniti, S. Guglielmetti, W. Fiore, M. Minuzzo, H. N.
Ngo, J. B. Ngere, S. Sadiq, P. N. Humphreys and A. P. Laws, Appl
Environ Microbiol 2016.
[17] a) L. G. Griffith and S. Lopina, Biomaterials 1998, 19, 979-986; b) L.
Russo and L. Cipolla, Chemistry 2016, 22, 13380-13388.
[18] J. Zhang, J. Mao, H. Chen and M. Cai, Tetrahedron: Asymmetry 1994, 5,
2283-2290.
Scanning Electron Microscopy (SEM)
Twenty microliters of the suspension were deposited on Silicon (100)
wafer substrate (Aldrich, Saint Louis, Mo, USA). Prior to imaging the
sample was freeze-fractured after immersion in liquid nitrogen and then
mounted using carbon tape on aluminum SEM stubs and sputtered with
a thin gold layer. The sample was observed by a scanning electron
microscope (Philips-Fei ESEM XL30-LaB6) operating at 30 kV.
[19] a) Y. M. Angell, J. Alsina, G. Barany and F. Albericio, The Journal of
Peptide Research 2002, 60, 292-299; b) Y. Han, F. Albericio and G.
Barany, J Org Chem 1997, 62, 4307-4312.
[20] a) A. F. Drake, G. Siligardi and W. A. Gibbons, Biophys. Chem. 1988, 31,
143-146; b) G. Siligardi and A. F. Drake, Biopolymers 1995, 37, 281-
292; c) B. Bochicchio and A. M. Tamburro, Chirality 2002, 14, 782-792.
[21] E. A. Bienkiewicz, A. Moon Woody and R. W. Woody, J Mol Biol 2000,
297, 119-133.
Acknowledgements
[22] A. Perczel, M. Hollosi, P. Sandor and G. D. Fasman, Int J Pept Protein
Res 1993, 41, 223-236.
[23] a) K. Chockalingam, M. Blenner and S. Banta, Protein Eng Des Sel 2007,
20, 155-161; b) D. E. Meyer and A. Chilkoti, Nat Biotechnol 1999, 17,
1112-1115.
This work was supported by the following grants: MIUR (PRIN
2010LSH3K). We thank and acknowledge from University of
Basilicata, Dr. Maria Antonietta Crudele for technical assistance,
Mr. Alessandro Laurita and Mr. Antonio V. Romano (ex-CIGAS)
for TEM and AFM images, respectively.
[24] a) H. Cui, M. J. Webber and S. I. Stupp, Biopolymers 2010, 94, 1-18; b) R.
Orbach, L. Adler-Abramovich, S. Zigerson, I. Mironi-Harpaz, D. Seliktar
and E. Gazit, Biomacromolecules 2009, 10, 2646-2651; c) C. Tang, R.
V. Ulijn and A. Saiani, Langmuir 2011, 27, 14438-14449.
[25] R. Mammadov, A. B. Tekinay, A. Dana and M. O. Guler, Micron 2012, 43,
69-84.
Keywords: Glycopeptides • Elastin • Atomic Force Microscopy •
Circular dichroism • Self-assembly
[26] L. Russo, A. Gautieri, M. Raspanti, F. Taraballi, F. Nicotra, S. Vesentini
and L. Cipolla, Carbohydr Res 2014, 389, 12-17.
[1] J. E. Wagenseil and R. P. Mecham, Birth Defects Res C Embryo Today
2007, 81, 229-240.
[27] D. A. Grant and N. Kaderbhai, Biochem J 1986, 234, 131-137.
[28] J. Srivastava, A. Khare and N. K. Khare, Carbohydr Res 2008, 343, 2822-
2825.
[2] B. Bochicchio, A. Bracalello and A. Pepe, Chirality 2016, 28, 606-611.
[3] a) B. Bochicchio, A. Pepe, M. Crudele, N. Belloy, S. Baud and M. Dauchez,
Soft Matter 2015, 11, 3385-3395; b) L. Gotte, M. G. Giro, D. Volpin and
R. W. Horne, J Ultrastruct Res 1974, 46, 23-33.
[29] B. M. Pinto, D. G. Morissette and D. R. Bundle, Journal of the Chemical
Society, Perkin Transactions 1 1987, 9-14.
[30] B. Meng, Z. Zhu and D. C. Baker, Org Biomol Chem 2014, 12, 5182-5191.
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