Synthesis of ligand 2
(dichloromethan/methanol, 90/10, Rf: 0.26). The pure product
is isolated as a colorless oil which solidifies with time (187 mg,
30%).
Biotin N-hydroxysuccinimide ester A (ref. 16). To a stirred
solution of biotin (Sigma, Ref. B-4501, 99%, 5 g, 20.47 mmol)
and N-hydroxysuccinimide (Aldrich, Ref. 13,067-2, 97%,
2.36 g, 20.47 mmol) in anhydrous DMF (150 mL), 1.3 eq. of
1,3-dicyclohexylcarbodiimide (Aldrich, Ref. D8,000-2, 99%,
5.49 g, 24.44 mmol) is added. The mixture is stirred at room
temperature for 48 h. The formed dicyclohexylurea is filtered
off and the solvent is evaporated under reduced pressure to
dryness. 500 mL of diethyl ether are added to the residue and
the solution is stirred for 2 h, giving a white precipitate. After
filtration, this solid is recrystallized in isopropanol, yielding the
pure product as a white powder (6.5 g, 93%).
d1 (200.13 MHz, CDCl3) 6.75, 6.55, 6.44, 5.93 (4 6 1H,
H
4 6 br, NH, SH), 4.52 (1H, m, H1), 4.35 (1H, m, H4), 3.70–3.50
(12H, m, HG–L), 3.40–3.30 (4H, m, HN 1 HE), 3.16 (1H, m,
H3), 2.96–2.88 (2H, m, H2), 2.52 (2H, m, HX), 2.17 (2H, m, HO),
1.85–1.50 (14H, m, HA,B,C,F,M,P,W), 1.50–1.20 (12H, m, HQ–V).
d13 (56.32 MHz, CDCl3) 173.4, 173.2, 172.6, 164.0, 70.4,
C
70.0, 69.8, 61.9, 60.3, 55.5, 40.5, 37.8, 37.6, 36.8, 35.9, 34.0,
29.4, 29.3, 29.1, 29.0, 28.3, 28.1, 28.0, 25.8, 25.5, 25.4, 24.6.
m/z (DCI NH3 1 Isobutane) 647 (M 1 H)1.
d1 (200.13 MHz, CDCl3) 4.31 (1H, m, H1), 4.16 (1H, m,
Preparation of water-soluble, biotinylated nanocrystals
H
Ligand 2 (20 mL, 250 g L21 in dry chloroform) and ligand 1
(24.4 mg) are mixed with CdSe/ZnSe nanocrystals3 (core
diameter 3.7 nm, shell thickness 0.7 nm; 500 mL, 8 g L21 in dry
chloroform) in a 2 mL microtube under argon (molar ratio ~
95 mol% of ligand 1 and 5 mol% of ligand 2). The mixture is
stirred for 48 h at 30 uC in the dark. Then water (500 mL) and
acetone (100 mL) are added and the microtube is vigorously
shaken for 1 h. The aqueous layer is separated and evaporated
to dryness to give a colored solid, which is redispersed in water
(200 mL) and centrifuged (45 s, 10,000 rpm). The supernatant is
filtered with a 30000 d Vivaspin# filter, rinsed twice with water
(100 mL), vacuum-dried and stored at 4 uC.
H4), 3.10 (1H, m, H3), 2.89 (1H, m, H2), 2.81 (5H, s, HE 1 H2’),
2.67 (2H, m, HD), 1.80–1.35 (6H, m, HA,B,C).
m/z (DCI NH3 1 Isobutane) 342 (M 1 H)1.
N-(13-Amino-4,7,10-trioxatridecanyl) biotinamide B (ref. 17).
Biotin N-hydroxysuccinimide ester A (4 g, 11.71 mmol) is
dissolved in 100 mL of dry DMF. Under inert atmosphere, this
solution is added dropwise within 1 h to a solution of 4,7,10-
trioxa-1,13-tridecanediamine (Aldrich, Ref. 36,951-9, 97%,
12.91 g, 58.6 mmol) in 4 mL of triethylamine. After stirring
the reaction mixture at room temperature for 72 h, the solid
formed is filtered off and DMF is evaporated under reduced
pressure. The resulting oil is added dropwise to 1 L of hexane.
A white precipitate is formed after a few minutes. It is
recrystallized in isopropanol (2 h at reflux, 12 h without heating
and stirring), yielding 3.55 g of the pure product as white
crystals (67%).
Labeling of agarose beads with biotinylated nanocrystals
Biotin–agarose beads (Sigma, Ref. B 0519) in PBS (50 mL) are
rinsed twice with 100 mL of PBS (Sigma, Ref. P 4417). After
centrifugation, the surpernatant is removed. A solution of
streptavidin (Sigma, Ref. S 4762) in PBS (50 mL, 2.5 mg mL21
)
is added to the beads and the reaction mixture is kept at room
temperature during 15 minutes. The beads are then rinsed twice
with PBS (100 mL). Biotinylated nanocrystals are dispersed
in 50 mL of ultrapure water. 5 mL of this dispersion are
poured into the solution of streptavidin-conjugated beads.
After 5 minutes, the beads are rinsed twice with PBS (30 mL)
and placed on microscopy slides.
Fp: 111–113 uC
d1H (200.13 MHz, D2O) 4.40 (1H, m, H1), 4.25 (1H, m, H4),
3.60–3.35 (12H, m, HG–L), 3.25–3.10 (3H, m, H3 1 HE),
2.90–2.81 (2H, m, H2), 2.67 (2H, m, HN), 2.12 (2H, m, HD),
1.75–1.50 (8H, m, HA,B,C,M), 1.42 (2H, m, HF).
m/z (DCI NH3 1 Isobutane) 447 (M 1 H)1.
11-Mercaptoundecanoyl-N-hydroxysuccinimide ester C (ref. 18).
N-Hydroxysuccinimide (Aldrich, Ref. 13,067-2, 97%, 1.00 g,
8.7 mmol) is stirred in dichloromethane (500 mL) for 30 min.
11-Mercaptoundecanoic acid (MUA) (1.88 g, 8.62 mmol),
dissolved in 10 mL of dichloromethane, is poured into the first
solution. Then 1,3-dicyclohexylcarbodiimide (DCC) (Aldrich,
Ref. D8,000-2, 99%, 1.96 g, 9.5 mmol), dissolved in 50 mL
of dichloromethane, is added dropwise within 30 min. The
resulting mixture is stirred at room temperature for 24 h. The
dicyclohexylurea formed is filtered off and the solvent is
evaporated under reduced pressure. The resulting residue is
purified by flash chromatography (pentane/diethyl ether, 50/50,
Rf: 0.4) to yield compound C as a white solid (1.63 g, 60%).
d1H (200.13 MHz, CDCl3) 2.84 (4H, s, H12), 2.60 (2H, t, J ~
7.40 Hz, H2), 2.52 (2H, pseudo dt, H11), 1.85–1.50 (4H, m,
H10 1 H3), 1.50–1.10 (12H, m, H4–H9).
R-Phycoerythrin labeled agarose beads are prepared in the
same way, but using 2 mL of a solution of R-Phycoerythrin-
biotin conjugate (Molecular Probes, Ref. P 811) instead of
biotinylated nanocrystals.
Labeling of neuronal cells with biotinylated nanocrystals
Neuronal cells from mouse embryo cerebellum (stage E14) are
grown for 5 days on polylysin glass covers in neurobasal medium
supplemented with glutamine. The cells are then fixed for
20 minutes in 4% paraformaldehyde in phosphate-buffered saline
(PBS in mM: 3.16 NaH2PO4, 6.84 Na2HPO4, 0.15 NaCl, pH 7.2).
Fixation and all subsequent steps are performed at room
temperature. After permeabilization for 30 minutes in PBS 1
0.1% Triton X-100, the cells are blocked for 2 h with reagent 2
from a CSA amplification kit (DAKO), supplemented with
0.01 mg mL21 streptavidin. Subsequently, the cells are washed
3 times with PBS 1 0.1% Tween20 and incubated for 30 minutes
with the neuron specific anti-class III b-tubulin antibody (TuJ1,
BAbCO, dilution 1/500 in PBS 1 0.1% Tween20 1 5 mM biotin).
In the following, the buffer used for all incubation and washing is
PBS 1 0.1% Tween20. The cells are washed again 3 times and
incubated for 30 minutes with biotinylated anti-(mouseIgG)-
antibody (reagent 4 of CSA kit, DAKO). After three additional
washes, the cells are incubated either with Cy3-streptavidin
(Amersham) or with unlabeled streptavidin (10 mg mL21) for
30 minutes and washed again 3 times. Cells labeled with Cy3-
streptavidin can then be mounted in an antifading medium
(DAKO) and directly observed, whereas cells incubated with
unlabeled straptavidin are further incubated for 30 minutes with
d13C (56.32 MHz, CDCl3) 169.1, 168.6, 34.0, 30.9, 29.3, 29.2,
29.0, 28.7, 28.3, 25.6, 24.6, 24.5.
m/z (DCI NH3 1 Isobutane) 218 (MUA), 236 (MUA 1
NH41), 316 (M 1 H)1, 333 (M 1 NH41).
Ligand 2 (ref. 18). Under inert atmosphere, N-(13-amino-
4,7,10-trioxatridecanyl) biotinamide B (446 mg, 1 mmol) is
added to a solution of 11-mercaptoundecanoyl-N-hydroxy-
succinimide ester C (315 mg, 1 mmol) in 50 mL of dry
chloroform and 200 mL of triethylamine. The reaction mixture
is stirred at room temperature for 1.5 h (control by thin layer
chromatography). Chloroform is evaporated under reduced
pressure and the residue is purified by flash chromatography
J . M a t e r . C h e m . , 2 0 0 4 , 1 4 , 2 6 3 8 – 2 6 4 2
2 6 4 1