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A.Z. El-Sonbati et al. / Journal of Molecular Liquids 221 (2016) 51–60
In the study simulates the actual docking process in which the li-
2.4. pH metric titration
gand–protein pair-wise interaction energies are calculated using
Docking Server [13]. The MMFF94 Force field was for used energy min-
imization of ligand molecule using Docking Server. Gasteiger partial
charges were added to the ligand atoms. Non-polar hydrogen atoms
were merged and rotatable bonds were defined. Docking calculations
were carried out on 2Q7K hormone protein model. Essential hydrogen
atoms, Kollman united atom type charges and solvation parameters
were added with the aid of AutoDock tools [14]. Affinity (grid) maps
of 20 × 20 × 20 Å grid points and 0.375 Å spacing were generated
using the Autogrid program [15]. AutoDock parameter set- and dis-
tance-dependent dielectric functions were used in the calculation of
the van der Waals and the electrostatic terms, respectively.
The experimental procedure involved the titration of the following
solutions (total volume = 50 ml) against a standard CO2-free
(0.002 M) NaOH solution. The following mixtures (i)–(iii) were pre-
pared and titrated potentiometrically at 298 K against standard
0.002 M NaOH in a 40% (by volume) ethanol–water mixture:
i) 5 cm3 0.001 M HCl + 5 cm3 1 M KCl + 20 cm3 ethanol.
ii) 5 cm3 0.001 M HCl + 5 cm3 1 M KCl + 15 cm3 ethanol + 5 cm3
0.00 l M ligand.
iii) 5 cm3 0.001 M HCl + 5 cm3 l M KCl + 15 cm3 ethanol + 5 cm3
0.001 M ligand + 10 cm3 0.0001 M metal chloride.
2.2. Materials
For each mixture, the volume was made up to 50 cm3 with bidistilled
water before the titration. These titrations were repeated for tempera-
tures of 308 K and 318 K.
The ligands solutions (0.001 M) were prepared by dissolving an ac-
curately weighed amount of the solid in ethanol. Metal ion solutions
(0.0001 M) were prepared from analar metal chlorides in bidistilled
water and standardized with EDTA [16]. Solutions of 0.001 M HCl and
1 M KCl were also prepared in bidistilled water. A carbonate-free sodi-
um hydroxide solution in 40% (by volume) ethanol–water mixture
was used as titrant and standardized against analar oxalic acid [17].
All chemicals used in this investigation were chemically pure grade
derived from BDH. They include chlorides of Mn2+, Co2+, Ni2+ and
Cu2+, sodium hydroxide (NaOH) (97%), sodium nitrite (NaNO2)
(97%), hydrochloric acid (HCl) (37%); purchased from BDH. The stan-
dard chemicals aniline (99%) and 4-alkylanilines (alkyl: OCH3 (99%)
and NO2 (98%)) purchased from Aldrich, Fluka and Merck and were
used without any further purification. Water used was bidistilled
water; distillation process was carried out using both of condensation
process and ion exchange technique.
2.3. Preparation of azo rhodanines (HL1−3
)
3. Results and discussion
The ligands (HL1–3) were prepared previously [3,5] by coupling of 2-
thioxo-4-thiazolidinone with aniline or its derivatives. 25 cm3 of dis-
tilled water containing 0.01 mol concentrated hydrochloric acid was
added to aniline (0.01 mol) or p-derivatives (–OCH3 and –NO2). To the
resulting mixture was cooled to 0 °C, a solution of 0.01 mol of sodium
nitrite in 20 ml of water was added dropwise. The formed diazonium
chloride was consecutively coupled with an alkaline solution of
0.01 mol 2-thioxo-4-thiazolidinone, in 10 ml of pyridine. The colored
precipitate, which formed immediately, was filtered through sintered
glass crucible, washed several times with water. The crude products
were purified by recrystallization from hot ethanol and then dried in a
vacuum desiccator over CaCl2. The purity of the compounds was
checked by elemental analyses [3].
3.1. Molecular docking
Molecular docking aims to achieve an optimized conformation for
both the protein and drug with relative orientation between them
such that the free energy of the overall system is minimized [18,19].
The data of molecular docking between ligands (HL1–3) and receptor
prostate cancer 2Q7K hormone showed a possible arrangement be-
tween ligands (HL1–3) and receptor (2Q7K). On a docking study show-
ing a favorable interaction between ligands (HL1–3) and the receptor
prostate cancer 2Q7K hormone and the calculated of energy are listed
in Table 1 and Fig. 1. 2D plot curves of docking with ligands (HL1–3
)
are shown in Fig. 2. This interaction could activate apoptosis in cancer
cells energy of interactions with ligands (HL1–3). Binding energies are
most widely used mode of measuring binding affinity of ligands. Thus,
decrease in binding energy due to mutation will increase the binding af-
finity of the ligands (HL1–3) towards the receptor. The characteristic fea-
ture of ligands (HL1–3) represent in presence of several active sites
available for hydrogen bonding.
The resulting formed ligands are:
HL1: 4-hydroxy-5-(4-methoxyphenylazo)thiazole-2(3H)-thione.
HL2: 4-hydroxy-5-(phenylazo)thiazole-2(3H)-thione.
3.2. Potentiometric studies
The interaction of a metal with an electron donor atom of li-
gands (HLn) is usually followed by the release of H+. Alkaline po-
tentiometric titrations are based on the detection of the protons
released upon complexation. The main advantage of this technique,
compared to other methods is that from the titration curves it is
possible to follow complexation continuously as a function of pH
and to detect exactly at which pH complexation takes place. Fur-
thermore, it is possible to calculate the dissociation constants and
HL3: 4-hydroxy-5-(4-nitrophenylazo)thiazole-2(3H)-thione.
Table 1
Energy values obtained in docking calculations of ligands (HL1−3) with the receptor of prostate cancer 2Q7K hormone.
Compound Est. free energy of binding
(kCal/mol)
Est. inhibition constant
(Ki) (μM)
vdW + bond + desolv energy
(kCal/mol)
Electrostatic energy
(kCal/mol)
Total intercooled energy
(kCal/mol)
Interact
surface
HL1
HL2
HL3
−6.90
−6.33
−5.69
67.98
22.93
8.73
−7.67
−7.25
−6.72
−0.10
−0.06
−0.06
−7.76
−7.31
−6.78
490.428
479.373
445.858