M.S.C. Pedras et al. / Bioorg. Med. Chem. 20 (2012) 225–233
231
against black spot and other major fungal diseases of economically
important crops.
7.50 (m, 2H), 7.41 (m, 1H), 5.16 (br s, NH), 3.74 (s, 3H). 13C NMR
(125.8 MHz, CD CN): d 157.3, 136.1, 133.5, 133.0, 128.7, 127.9,
27.8, 126.4, 126.2, 126.1, 125.8, 52.4, 45.4. HRMS-EI: m/z (%)
215.0943 (100) (215.0946 calcd for C13H13NO ), 200 (62), 156 (40),
3
1
4
4
. Experimental
2
1
41 (41), 129 (46).
.1. Materials and general procedures
4
.2.3. Methyl (1-naphthalenylmethyl)carbonate (19)
Chemicals were purchased from Sigma-Aldrich Canada (Oak-
1-Naphthalenylmethanol (23, 100 mg, 0.63 mmol) in THF
ville, ON) and chromatography media and buffers from GE Health-
care. All operations regarding protein extraction, purification and
assays were carried out at 4 °C, except where noted otherwise.
All compounds were characterized using NMR spectral data (re-
corded on Bruker 500 MHz spectrometers) and HRMS-EI data.
HPLC analyses were carried out with Agilent systems equipped
with a quaternary pump, an automatic injector, a photodiode array
detector (wavelength range 190–600 nm) and a degasser. Elution
(1 mL) was added to a cold solution of NaH (75 mg suspension in
oil, 1.9 mmol) in THF (3 mL), the reaction mixture was stirred at
0 °C for 30 min, and then methyl chloroformate (94.5 lL,
0.82 mmol) was added. After stirring for 5 h at rt, the reaction mix-
ture was cooled to 0 °C, diluted with water, the solvent layer sep-
arated and the aqueous reextracted with EtOAc, the combined
organic extract was dried over Na SO and concentrated to dry-
2
4
ness. Purification of the crude product (SiO , EtOAc–hexanes) affor-
2
method A: an Eclipse XDB-C18 column (5
50 mm ꢁ 4.6 i.d.), mobile phase linear gradient of H
50:50 to 0:100) for 25.0 min and a flow rate 0.75 mL/min; elution
method B (for detection of amines) a Zorbax SB C18 column
3.5
m particle size silica, 100 ꢁ 3 mm i.d.), a linear gradient of
O–CH OH (each solvent containing 0.01% n-propylamine,
l
m particle size silica,
ded methyl 1-naphthalenylmethyl)carbamate (19) as a white
semi-solid (109 mg, 0.50 mmol, 80% yield). H NMR (500.3 MHz,
1
1
(
2
O–CH OH
3
CDCl ): d 8.10 (m, 1.6H), 7.90 (m, 3.4H), 7.63–7.45 (m, 6.4H),
3
13
5.70 (s, 0.6H), 5.68 (s, 2H), 3.86 (s, 0.6H), 3.84 (s, 3H). C NMR
(
H
l
(125.8 MHz, CDCl ): d 155.8, 133.7, 131.6, 130.8, 129.6, 128.7,
3
2
3
127.7, 126.8, 126.0, 125.2, 123.5, 68.1, 54.9. HRMS-EI: m/z mea-
4
0:60 to 0:100), for 10 min and a flow rate of 0.5 mL/min.
sured 216.0792 (216.0786 calcd for C13H12O3).
High-resolution mass spectral (HRMS) data were obtained using
an Agilent HPLC 1100 series directly connected to a QSTAR XL Mass
Spectrometer (Hybrid Quadrupole-TOF LC/MS/MS) with turbo
4.2.4. Methyl (2-naphthalenylmethyl)carbonate (20)
As reported above for 19, but using 2-naphthalenylmethanol
(24, 100 mg, 0.63 mmol). Purification of the crude product (SiO2,
EtOAc–hexanes) afforded methyl 2-naphthalenylmethyl)carba-
mate (20) as a white solid (34 mg, 0.16 mmol, 51% yield based on
recovered starting material, 50 mg; mp 51–52 °C).
spray ESI source. Samples were dissolved in CH
using a Hypersil ODS C-18 column (5 m particle size silica,
00 ꢁ 2.1 mm i.d.). The mobile phase consisted of a linear gradient
of H O–CH CN (each solvent containing 0.1% formic acid, 75:25 to
5:75 in 35 min to 0:100 in 5 min) and a flow rate of 1.0 mL/min.
3
CN and analyzed
l
2
1
2
3
H NMR
2
3
(500.3 MHz, CD CN): d 7.86 (m, 4H), 7.50 (m, 3H), 5.35 (s, 2H),
1
3
Data acquisition was carried out in either positive or negative
polarity mode per LC run. Data processing was carried out by Ana-
lyst QS Software. HRMS-EI spectral data were obtained using a VG
3.83 (s, 3H). C NMR (125.8 MHz, CD CN): d 156.0, 133.4, 133.3,
3
132.8, 128.6, 128.2, 127.9, 127.7, 126.6, 126.5, 125.9, 70.0, 55.1.
HRMS-EI: m/z measured 216.0781 (216.0786 calcd for C13H12O3).
7
0 SE mass spectrometer using a solids probe.
4
.3. Antifungal bioassays and biotransformations of compounds
4
.2. Synthesis
12–20 by Alternaria brassicicola
Compounds 1,13 1a, 12, 13, and 14–16 were prepared as pre-
6
6
13
Compounds 12–20 were used in antifungal bioassays, carried
out as previously described. In brief, 7-day-old cultures of A. bras-
3
viously reported, and their purity determined to be P98% by HPLC
1
and H NMR.
sicicola on PDA under constant light at 23 ± 1 °C were used for
mycelial radial growth assays. Plugs (4 mm) were cut from the
edges of mycelia and placed inverted onto 12-well agar plates
amended with test compounds (dissolved in DMSO). The final con-
centrations of each compound in agar varied from 0.10 to 0.50 mM,
with a DMSO concentration of 1%. The plates were allowed to grow
under constant light at 23 ± 1 °C; the diameter of the mycelial mat
was measured after 96 h and compared to control cultures grown
on plates containing DMSO only.
4
.2.1. Methyl N-[(1-naphthalenyl)methyl]carbamate (17)
Methyl chloroformate (58 L, 0.73 mmol) and triethylamine
183 L, 1.3 mmol) were added to a solution of 1-naphthalenylme-
thanamine (21, 100 mg, 0.64 mmol) in CH Cl (5 mL), and the reac-
tion mixture was stirred at rt for 2 h. The reaction mixture was
diluted with water, extracted with EtOAc, the combined organic
l
(
l
2
2
extract was dried over Na
2
SO
4
and concentrated to dryness. Purifi-
, EtOAc–hexanes) afforded methyl
-naphthalenylmethyl)carbamate (17) as a white solid (134 mg,
cation of the crude product (SiO
2
Liquid cultures of each pathogen were grown in 250 ml Erlen-
meyer flasks containing 100 mL of minimal medium inoculated
1
0
(
1
6
.62 mmol, 97% yield; mp 74–75 °C). H NMR (500.3 MHz, CD
two rotamers 0.2:0.8) d 8.09 (d, J = 8.2 Hz, 0.2H), 8.04 (d, J = 8.2 Hz,
3
OD):
fungal spores for a final concentration of 1 ꢁ 10 /100 mL. After
48 h at 23 ± 1 °C, under constant light a solution of each compound
0
5
.8H), 7.84 (d, J = 7.5 Hz, 1H), 7.81–7.75 (m, 1H), 7.53–7.38 (m, 4H),
3
(12–20) in CH CN (100–250 lL depending on solubility) was added
.06 (s, 0.4H), 4.72 (s, 1.6), 3.65 (br s, 3H).14 13C NMR (125.8 MHz,
to the cultures, for a final concentration of 0.10 mM. Similar control
solutions containing compounds only or mycelia were prepared.
The flasks were returned to the shaker, samples (5–10 mL) were
withdrawn at various times and immediately frozen or extracted
with EtOAc. The extracts were analyzed by HPLC using elution
method A for compounds 12–20.
3
CD OD): (two rotamers) d 159.6, 138.1, 135.6, 135.4, 132.8, 132.7,
1
1
29.8, 129.7, 129.2, 129.1, 127.4, 127.2, 126.9, 126.8, 126.5, 126.4,
26.2, 124.8, 124.4, 63.5, 52.7, 43.6. HRMS-EI: m/z (%) 215.0950
(
2
15) (215.0946 calcd for C13H13NO ), 158 (60), 141 (21), 129 (100).
4
.2.2. Methyl N-[(2-naphthalenyl)methyl]carbamate (18)
As reported above for 17, but using 2-naphthalenylmethanamine
4.4. Isolation, chromatographic purification and activity assay
of BHAb
(
22, 91 mg, 0.58 mmol). Purification of the crude product (SiO
EtOAc–hexanes) afforded methyl 2-naphthalenylmethyl)carbamate
18) as a white solid (120 mg, 0.56 mmol, 96% yield; mp 110–
2
,
(
1
A. brassicicola (isolate ATCC 96866) spores and liquid cultures
1
were obtained under the conditions described previously.1 For
3
11 °C). H NMR (500.3 MHz, CDCl ): d 7.83 (m, 3H), 7.72 (s, 1H),