18.
19.
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Ramírez–Prada, J.; Robledo, S.M.; Vélez, I.D.; del Pilar
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Trypanosoma brucei assay: The growth inhibitory activity
of the compounds was evaluated using the Alamar blue
assay. Bloodstream forms of T. brucei brucei (strain 427)
cultured in HMI-9-medium supplemented with 10% FBS,
Nefertiti, A.; Batista, M.; Da Silva, P.; Batista, D.; Da
Silva, C.; Peres, R.; Torres-Santos, E.; Cunha-Junior, E.;
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10%
Serum
plus
(SAFC),
0.05
mM
mM
bathocuproinesulfonate, 1.5 mM L-cysteine,
1
hypoxanthine, 0.2 mM β-mercaptoethanol, 0.16 mM
thymidine, 1 mM pyruvate, and 0.0125% Tween 80 were
dispensed into sterile 96-well plates at 5 X 103 cells/well,
and treated with compounds for 48 hours. The compounds
were prepared in DMSO and were tested in triplicates
with a total assay volume of 100 µL. Next, Alamar blue
(20 µL) was added and the plate was incubated at 37°C
Carvalho, L., Martínez-García, M., Pérez-Victoria, I.,
Manzano, J.I., Yardley, V., Gamarro, F. and Pérez-
Victoria, J.M. Antimicrob Agents Ch 2015, 59, 6151-
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for
4
hours. Immediately following incubation,
fluorescence signals were read (λex 530 nm, λem 590nm).
IC50 values were determined by testing compounds in a
dose range of 0.3 – 50 µM. Suramin was used as positive
control.
a. Scory, S.; Caffrey, C. R.; Stierhof, Y. D.; Ruppel, A.;
Steverding, D. Exp. Parasitol 1999, 91, 327-333.; b.
Troeberg, L.; Morty, R. E.; Pike, R. N.; Lonsdale-Eccles,
J. D.; Palmer, J. T.; McKerrow, J. H.; Coetzer, T. H. Exp.
Parasitol 1999, 91, 349-355.; c. Steverding, D.; Sexton,
D. W.; Wang, X.; Gehrke, S. S.; Wagner, G. K.; Caffrey,
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15.
Cytotoxicity Assay: Human hepatocarcinoma cell line
(Hep G2, CRL-11997™) was used for cytotoxicity
studies. The cells were grown in complete medium
(DMEM: F12 containing L-glutamine and sodium
bicarbonate, 10% FBS, 1% penicillin/streptomycin,
0.0125% Tween 80) incubated at 37°C in a 5% CO2
environment. Once 80-90% confluent, the cells were
washed with phosphate-buffered saline (PBS), treated
with 0.25% (w/v) of trypsin/EDTA, counted and
suspended in fresh complete media. Into 96-well plates,
198 µL of 5 x 105 cells/mL were seeded and incubated for
about 24 hours. Cells were treated with the compounds
prepared in DMSO for 72 hours. After 72 hours, the old
cell medium is removed and fresh DMEM:F12 medium
containing MTT (5 mg/mL in PBS) was added to the
cells, and incubated for 1.5 hour. The MTT-containing
medium was gently removed and replaced with DMSO
(200 μL/well). Lyzed cells were then repeatedly
resuspended in DMSO using multichannel pipette in order
to allow the formazan crystals to dissolve. Plates were
incubated for 10 minutes and absorbance were measured
at 550 nm. All compounds were tested in triplicates. SDS
(10%) was used as assay positive control and
podophyllotoxin was used as cytotoxicity control.
23.
24.
Ettari, R.; Tamborini L.; Angelo I. C.; Micale N.; Pinto
A.; De Micheli C.; Conti P. J Med Chem. 2013, 56, 5637.
Mott, B.; Ferreira, R.; Simeonov, A.; Jadhav, A.; Ang, K.;
Leister, W.; Shen, M.; Silveira, J.; Doyle, P.; Arkin, M.;
McKerrow, J.; Inglese, J.; Austin, C.; Thomas, C.;
Shoichet, B.; Maloney, D. J. Med. Chem. 2010, 53, 52.
25.
26.
Kiemele, E.R.; Wathier, M.; Bichler, P.; Love, J.A. Total
synthesis of K777: Successful application of transition-
metal-catalyzed alkyne hydrothiolation toward the
modular synthesis of a potent cysteine protease inhibitor.
Org lett 2016, 18, 492-495.
a. T. brucei cathepsin L (rhodesain) was expressed in
Pichia pastoris. The inhibition assays were carried out in
50 mM sodium acetate (assay buffer) pH 5.5, containing 2
mM DTT and 0.01% Triton X-100. The enzyme (5 µL,
final concentration of 0.8 nM) and test compound (5 µL,
final concentration of 20 μM) mixtures were pre-
incubated for 1 hour, followed by the addition of 100 μL
of the substrate, Z-Phe-Arg-AMC (10 µM), in sodium
acetate buffer pH 5.5. Fluorescence (RFU/sec) resulting
from proteolytic cleavage of the substrate was monitored
at 25 °C (λex 355 nm and λem 460 nm) on a PolarStar
Omega plate reader (BMG LABTECH, Germany). E-64
(10 µM) was used as positive control (100% inhibition).
For time dependent inhibition studies, rhodesain-
compound assay mixture includes 30 µL of compound 27
in DMSO, 30 µL of rhodesain in assay buffer, and 180 µL
of assay buffer. Aliquots (10 µL) of rhodesain-27 mixture
were assayed every 10 minutes using Z-Phe-Arg-AMC
(10 µM) as substrate. Fluorescence (RFU/sec) resulting
from proteolytic cleavage of the substrate was monitored
for 7 minutes as described above. Compound 27 was
assayed at the following concentrations: 0, 0.06, 0.12,
0.24, 0.97, and 3.9 µM.; b. Cathepsin L (CatL) from
human liver (Millipore Sigma) was used for protease
16.
In vivo assay: T. b. brucei STIB795-Luc model was used
for in vivo studies. The studies were conducted at the
Swiss Tropical and Public Health Institute (Basel,
Switzerland). They were approved by the veterinary office
of the Canton Basel-Stadt, Switzerland under license
number 2813. Four female NMRI mice were used per
experimental group. A control group and two treatment
groups (50 mg/kg/day and 100 mg/kg/day). Each mouse
was inoculated intraperitoneally (ip) with 1 x 104
bloodstream forms of STIB795-Luc. Treatments were
administered ip in water (plus 10% DMSO) 3 days post-
infection. All mice were monitored for parasitemia by live
imaging. Moribund mice were euthanized after detection
of parasitemia.
17.
Parhizgar, A.R.; Tahghighi, A. Iran J Med Sci 2017, 42,
115.