Constrained Derivatives of Stylostatin 1
J ournal of Medicinal Chemistry, 2003, Vol. 46, No. 26 5831
to yield a light yellow oil, which was purified by semiprepara-
tive RP-HPLC. After lyophilization of the pure cyclopeptides
they were white solids.
as in the general method to yield stylostatin 1 (2, 9.6 mg, 50%)
as a white solid.
Cycliza tion of P ep tid e 8 To Give Ben zyl-ψ-stylosta tin
(3) a n d epi-Ben zyl-ψ-stylosta tin (10). Following the general
procedure, from linear peptide 8 (20 mg, 0.022 mmol), PyBOP
(14 mg, 0.027 mmol), and DIPEA (9.2 µL, 0.053 mmol),
cyclization was completed after 2 h as determined by analytical
reversed-phase HPLC. The crude product was purified by
semipreparative RP-HPLC and lyophilized to yield ψ-stylo-
statin 3 (6.2 mg, 32%) and its Ile epimer 10 (3.7 mg, 19%) as
white solids. Ben zyl-ψ-stylosta tin (3): Analytical HPLC (tR
19.5 min, characterization conditions); ES-MS calcd for
Cycliza tion of 6 To Give Stylosta tin 1 (2) a n d epi-
Stylosta tin (9). Following the general procedure for cycliza-
tion, from compound 6 (20 mg, 0.026 mmol), PyBOP (16.2 mg,
0.031 mmol), and DIPEA (11 µL, 0.063 mmol), the cyclization
was completed after 28 h, as determined by analytical reversed-
phase HPLC. The crude product was purified by semiprepara-
tive RP-HPLC and lyophilized to yield stylostatin 1 (2) (4.5
mg, 23%) and its Ile epimer 9 (7.7 mg, 40%) as white solids.
Stylosta tin 1 (2): Analytical HPLC (tR 15.6 min, character-
ization conditions); ES-MS calcd for C36H54N8O9 742.4, found
C
45H62N8O10 874.4, found m/z 875.5 [M + H+]. Tr a n s-3
1
1
m/z 743.4 [M + H+]; NMR (DMSO-d6) ser in e unit, H 3.67-
r ota m er : NMR (DMSO-d6) {ser in e} unit, H 3.00-3.05 (m,
1H, H-5), 3.32-3.42 (m, 1H, H-5), 3.65 (br t, J ) 7.3 Hz, 1H,
H-2), 4.03-4.06 (m, 1H, H-4), 4.12 (br d, J ) 8.4 Hz, 1H, H-3),
4.61 (d, J ) 12 Hz, 1H, CHAPh), 4.67 (d, J ) 12 Hz, 1H,
CHBPh), 5.10-5.20 (br s, 1H, OH), 7.10-7.34 (m, 5H, H-Ph),
9.07 (br s, 1H, NH); 13C 41.6 (C-5), 55.3 (C-2), 67.7 (C-3), 70.7
(OCH2Ph), 73.3 (C-4), 125.9-128.6 (C-Ph); a la n in e unit, 1H
1.30 (d, J ) 7 Hz, 3H, H-3), 4.25-4.34 (m, 1H, H-2), 7.71 (br
s, 1H, NH); 13C 18.6 (C-3), 50.2 (C-2); isoleu cin e unit, 1H 0.92
(d, J ) 6.7 Hz, 3H, H-5), 0.79-0.86 (m, 3H, C(3)-CH3), 1.36-
1.45 (m, 2H, H-4), 1.92-1.95 (m, 1H, H-3), 4.50-4.56 (m, 1H,
H-2), 7.16-7.20 (m, 1H, NH); 13C 11.2 (C-5), 16.0 (C(3)-CH3),
3.69 (m, 2H, H-3), 3.85 (dd, J ) 9.2 and 4 Hz, 1H, H-2), 8.46
(d, J ) 3.6 Hz, 1H, NH); 13C 58.8 (C-2), 60.4 (C-3); a la n in e
unit, 1H 1.13 (d, J ) 6.5 Hz, 3H, H-3), 4.44-4.46 (m, 1H, H-2),
7.32 (d, J ) 7.2 Hz, 1H, NH); 13C 15.9 (C-3), 47.4 (C-2);
isoleu cin e unit, 1H 0.77-0.82 (m, 9H, C(3)-CH3, H-5), 1.22-
1.30 (m, 1H, H-4), 1.50-1.55 (m, 1H, H-4), 1.71 (m, 1H, H-3),
4.02 (dd, J ) 8.7 and 5 Hz, 1H, H-2), 8.65 (d, J ) 4.8 Hz, 1H,
NH); 13C 10.5 (C-5), 14.4 (C(3)-CH3), 24.4 (C-4), 35.2 (C-3),
56.6 (C-2); p r olin e unit, 1H 0.68-0.77 (m, 1H, H-4), 1.49-
1.60 (m, 2H, H-4 and H-3), 2.15 (dd, J ) 12.4 and 7.1 Hz, 1H,
H-3), 2.6 (t, J ) 10.6 Hz, 1H, H-5), 3.23 (dt, J ) 10.6 and 7.9
Hz, 1H, H-5), 4.42 (d, J ) 7.1 Hz, 1H, H-2); 13C 20.7 (C-4),
29.7 (C-3), 45.1 (C-5), 60.1 (C-2); p h en yla la n in e unit, 1H 3.02
(under the H2O signal, 1H, H-3), 3.14 (dd, J ) 14 and 4 Hz,
1H, H-3), 4.15 (ddd, J ) 12, 7.8 and 4.4 Hz, 1H, H-2), 7.12 (d,
J ) 7.1 Hz, 2H, H-oPh), 7.20 (t, J ) 7.3 Hz, 1H, H-pPh), 7.27
1
22.9 (C-4), 37.2 (C-3), 54.4 (C-2); p r olin e unit, H 1.60-1.65
(m, 1H, H-4), 1.65-1.70 (m, 1H, H-3), 1.77-1.83 (m, 1H, H-3),
1.90-2.00 (m, 1H, H-4), 3.33-3.50 (m, 1H, H-5), 3.70-3.75
(m, 1H, H-5), 3.90-3.96 (m, 1H, H-2); 13C 24.9 (C-4), 27.9 (C-
1
3), 46.8 (C-5), 61.4 (C-2); p h en yla la n in e unit, H 3.26-3.32
(m, 1H, H-3), 3.75-3.80 (m, 1H, H-3), 3.75-3.80 (m, 1H, H-2),
(d, J ) 7.3 Hz, 2H, H-mPh), 8.58 (d, J ) 7.8 Hz, 1H, NH); 13
C
7.10-7.34 (m, 5H, H-Ph), 8.43 (br s, 1H, NH); 13C 33.6 (C-3),
36.8 (C-3), 57.5 (C-2), 126.3 (C-pPh), 128.2 (C-mPh), 128.4 (C-
oPh); leu cin e unit, 1H 0.77-0.82 (m, 3H, H-5), 0.83 (d, J )
6.2 Hz, 3H, H-5), 1.48-1.52 (m, 1H, H-4), 1.53-1.63 (m, 2H,
H-3), 4.27-4.31 (m, 1H, H-2), 8.03 (d, J ) 9.6 Hz, 1H, NH);
13C 21.0 and 22.9 (C-5), 24.2 (C-4), 39.9 (C-3), 51.3 (C-2);
1
56.4 (C-2), 125.9-128.9 (C-Ph); leu cin e unit, H 0.74 (d, J )
6.2 Hz, 3H, H-5), 0.79-0.86 (m, 3H, H-5), 1.36-1.42 (m, 1H,
H-4), 1.55-1.60 (m, 2H, H-3), 5.03-5.08 (m, 1H, H-2); 13C 20.3
and 23.0 (C-5), 23.0 (C-4), 34.1 (C-3), 52.8 (C-2); a sp a r a gin e
1
unit, H 2.50-2.60 (m, 1H, H-3), 2.27 (dd, J ) 15 and 5.2 Hz,
1
a sp a r a gin e unit, H 3.04-3.08 (m, 2H, H-3), 4.27-4.31 (m,
1H, H-3), 4.70-4.76 (m, 1H, H-2), 6.92 (br s, 1H, CONH2),
1H, H-2), 7.26-7.30 (m, 1H, CONH2), 7.74 (d, J ) 5.4 Hz, 1H,
NH), 7.78 (sa, 1H, CONH2); 13C 35.7 (C-3), 49.5 (C-2). epi-
Stylosta tin (9): Analytical HPLC (tR 16.9 min, characteriza-
tion conditions); ES-MS calcd for C36H54N8O9 742.9, found m/z
7.16-7.20 (m, 1H, CONH2), 8.15 (d, J ) 8.8 Hz, 1H, NH); 13
C
37.5 (C-3), 50.0 (C-2). Cis-3 r ota m er : NMR (DMSO-d6)
{ser in e} unit, 1H 3.05 (br d, J ) 10.5 Hz, 1H, H-5), 3.32-
3.42 (m, 1H, H-5), 3.65 (br t, J ) 7.3 Hz, 1H, H-2), 3.96-3.99
(m, 1H, H-4), 4.03-4.06 (m, 1H, H-3), 4.59 (d, J ) 12 Hz, 1H,
CHAPh), 4.66 (d, J ) 12 Hz, 1H, CHBPh), 5.10-5.20 (br s, 1H,
OH), 7.10-7.34 (m, 5H, H-Ph), 8.96 (d, J ) 6.1 Hz, 1H, NH);
13C 42.3 (C-5), 56.2 (C-2), 68.5 (C-3), 70.7 (OCH2Ph), 73.5 (C-
4), 125.9-128.6 (C-Ph); a la n in e unit, 1H 1.30 (d, J ) 7 Hz,
3H, H-3), 4.50-5.56 (m, 1H, H-2), 7.94 (d, J ) 8.8 Hz, 1H,
1
743.9 [M + H]+; NMR (DMSO-d6) ser in e unit, H 3.72 (ddd,
J ) 11.6, 4.8 and 3 Hz, 1H, H-3), 3.96-4.03 (m, 1H, H-3), 4.17-
4.25 (m, 1H, H-2), 5.13 (m, 1H, OH), 7.22-7.28 (m, 1H, NH);
13C 55.5 (C-2), 62.2 (C-3); a la n in e unit, 1H 1.23 (d, J ) 7.3
Hz, 3H, H-3), 4.25-4.27 (m, 1H, H-2), 7.22-7.27 (m, 1H, NH);
1
13C 18.1 (C-3), 48.7 (C-2); D-a llo-isoleu cin e unit, H 0.73 (d,
J ) 7 Hz, 3H, C(3)-CH3), 0.81-0.86 (m, 3H, H-5), 0.91-0.97
(m, 1H, H-4), 1.27-1.33 (m, 1H, H-4), 1.84-1.90 (m, 1H, H-3),
4.37 (t, J ) 9 Hz, 1H, H-2), 7.46 (br s, 1H, NH); 13C 11.2 (C-5),
14.0 (C(3)-CH3), 26.0 (C-4), 34.8 (C-3), 53.6 (C-2); p r olin e
unit, 1H 1.54-1.64 (m, 1H, H-3), 1.74-1.80 (m, 2H, H-4), 1.8-
1.91 (m, 1H, H-3), 3.3 (under the H2O signal, 1H, H-5), 3.48
(dt, J ) 10.2 and 5.8 Hz, 1H, H-5), 4.08 (t, J ) 7.2 Hz, 1H,
H-2); 13C 24.3 (C-4), 28.8 (C-3), 46.8 (C-5), 59.6 (C-2); p h en yl-
1
NH); 13C 16.2 (C-3), 47.2 (C-2); isoleu cin e unit, H 0.75 (d, J
) 6.4 Hz, 3H, H-5), 0.79-0.86 (m, 3H, C(3)-CH3), 1.10-1.17
(m, 1H, H-4), 1.48-1.53 (m, 1H, H-4), 1.60-1.65 (m, 1H, H-3),
4.08 (dd, J ) 8.4 and 6 Hz, 1H, H-2), 7.99 (d, J ) 6 Hz, 1H,
NH); 13C 10.8 (C-5), 14.2 (C(3)-CH3), 24.2 (C-4), 36.2 (C-3),
55.2 (C-2); p r olin e unit, 1H 1.07-1.16 (m, 1H, H-4), 1.54-
1.60 (m, 1H, H-4), 1.65-1.70 (m, 1H, H-3), 2.05 (dd, J ) 12
and 6.5 Hz, 1H, H-3), 2.78 (br t, J ) 10.3 Hz, 1H, H-5), 3.24-
3.30 (m, 1H, H-5), 4.56-4.62 (m, 1H, H-2); 13C 21.0 (C-4), 29.0
(C-3), 44.9 (C-5), 59.9 (C-2); p h en yla la n in e unit, 1H 2.90 (dd,
J ) 13.8 and 10.7 Hz, 1H, H-3), 3.17 (dd, J ) 13.8 and 4.5 Hz,
1H, H-3), 4.36 (ddd, J ) 10.8, 7.5 and 4.5 Hz, 1H, H-2), 7.10-
7.34 (m, 5H, H-Ph), 8.52 (d, J ) 7.5 Hz, 1H, NH); 13C 37.0
(C-3), 55.2 (C-2), 125.9-128.6 (C-Ph); leu cin e unit, 1H 0.76
(d, J ) 6.2 Hz, 3H, H-5), 0.79-0.86 (m, 3H, H-5), 1.42-1.47
(m, 1H, H-4), 1.60-1.65 (m, 2H, H-3), 5.10 (dd, J ) 10.7 and
5.5 Hz, 1H, H-2); 13C 20.4 and 23.0 (C-5), 22.9 (C-4), 34.2 (C-
3), 53.0 (C-2); a sp a r a gin e unit, 1H 2.50-2.60 (m, 1H, H-3),
4.45 (dd, J ) 13 and 6 Hz, 1H, H-2), 6.98 (br s, 1H, CONH2),
7.44 (s, 1H, CONH2), 7.56 (d, J ) 7.3 Hz, 1H, NH); 13C 37.2
(C-3), 49.6 (C-2).
1
a la n in e unit, H 3.09 (br t, J ) 14 Hz, 1H, H-3), 3.16 (dd, J
) 14 and 4.4 Hz, 1H, H-3), 3.92-4.00 (m, 1H, H-2), 7.16 (d, J
) 7.1 Hz, 2H, H-oPh), 7.20 (t, J ) 7.3 Hz, 1H, H-pPh), 7.28 (t,
J ) 7.5 Hz, 2H, H-mPh), 8.69 (br s, 1H, NH); 13C 34.3 (C-3),
56.3 (C-2), 126.3 (C-pPh), 128.2 (C-mPh), 128.4 (C-oPh);
1
leu cin e unit, H 0.81-0.86 (m, 3H, H-5), 0.89 (d, J ) 6.8 Hz,
3H, H-5), 1.45 (ddd, J ) 14, 9.2 and 4.6 Hz, 1H, H-3), 1.54-
1.64 (m, 1H, H-3), 1.65-1.73 (m, 1H, H-4), 3.92-4.00 (m, 1H,
H-2), 8.34 (br s, 1H, NH); 13C 21.0 and 22.7 (C-5), 24.0 (C-4),
1
39.3 (C-3), 52.0 (C-2); a sp a r a gin e unit, H 2.66 (dd, J ) 15.4
and 7 Hz, 1H, H-3), 2.75 (br d, J ) 15.4 Hz, 1H, H-3), 4.23-
4.31 (m, 1H, H-2), 6.91 (br s, 1H, CONH2), 7.46 (br s, 1H,
CONH2), 8.10 (br s, 1H, NH); 13C 35.5 (C-3), 50.5 (C-2).
Cycliza t ion of P ep t id e 11 To Give St ylost a t in 1 (2).
Operating as in the general method, from peptide 11 (20 mg,
0.026 mmol), PyBOP (16.2 mg, 0.031 mmol), and DIPEA (11
µL, 0.063 mmol), the cyclization was completed after 5 min.
The crude product was purified by semipreparative RP-HPLC
epi-Ben zyl-ψ-stylosta tin 10: Analytical HPLC (tR 20.5
min, characterization conditions); ES-MS calcd for C45H62N8O10
874.4, found m/z 875.6 [M + H+]; NMR (DMSO-d6) {ser in e}
unit, 1H 3.05 (dd, J ) 12.5 and 2.3 Hz, 1H, H-5), 3.36 (dd, J )
12.5 and 5.6 Hz, 1H, H-5), 3.55 (t, J ) 6 Hz, 1H, H-3), 3.99-