Polarizability in Biomimetic Catalysis
J . Org. Chem., Vol. 61, No. 13, 1996 4359
negativity, hydrophobicity, steric size, π donor/acceptor
ability ...) correlates with the kcat/kun data.
In all macrocyclizations, enantiomerically pure ethenoan-
thracenes were coupled, although both R,R and S,S forms were
used. Workup of the macrocyclic products differed slightly
from that previously reported for host 1. After the macro-
cyclizations were complete, the reactions were filtered and the
In contrast, the correlation of kcat/kun with the polar-
izability data of Table 1 is very good. Adding substitu-
ents near a reacting center leads to a consistent rate
effect that correlates with the extent to which the
substituent is polarizable. As such, we consider the
current findings to support the model that increasing the
polarizability of the microenvironment in which a reac-
tion is occurring leads to a rate increase. That is, London
dispersion forces, working in concert with electrostatics
3
DMF or CH CN removed. The residues were then flash
chromatographed over silica eluting first with methylene
chloride and then ether in order to separate the macrocyclic
compounds from baseline impurities. The macrocycles were
then isolated from oligomers using preparative centrifugal
thin-layer chromatography (silica plates, 0-5% ether in
CH
2 2
Cl ).
1
Host 3, Tetr a m eth yl Ester . Yield 6%; H NMR (CDCl
3
)
(the cation-π interaction), hydrophobic interactions, and
δ 7.08 (d, J ) 8, 4H), 6.98 (s, 4H), 6.90 (d, J ) 2, 4H), 6.38 (dd,
other forces can be an important contributor to catalysis.
We have previously noted the similarity of the dealky-
lation reaction studied here to the important class of
J ) 2, 8, 4H), 5.23 (s, 4H), 4.98 (s, 8H), 3.78 (s, 12H), 2.14 (s,
+
+
12H); FAB-MS m/ e 964 (M
calcd for C60 12Li: 971.3619.
3
Host 5, Tetr a m eth yl Ester . Yield 8%; H NMR (CDCl )
); HRMS of M - Li 971.3621,
52
H O
1
biological methylation reactions involving the sulfonium
compound S-adenosylmethionine (SAM).11 We also specu-
δ 7.40 (s, 4H), 7.13 (d, J ) 8, 4H), 6.93 (d, J ) 2, 4H), 6.43 (dd,
J ) 2, 8, 4H), 5.25 (s, 4H), 5.04 (AB, J ) 14, ∆υ ) 52 Hz, 8H),
lated that perhaps cation-π interactions would be promi-
nent in the active sites of enzymes that mediate such
transformations. Recently, this speculation has received
some support from an X-ray structure of a DNA methy-
lase enzyme.12 The sulfonium of SAM is positioned in
van der Waals contact with a tryptophan from the
+
3
1
.78 (s, 12H); FAB-MS m/ e M - Li cluster 1050-1060 (1053
+
00 integral % within cluster); HRMS of M - Li 1051.1422,
35
calcd for C56
40 4
H O12 Cl Li: 1051.1434.
1
3
Host 6, Tetr a m eth yl Ester . Yield 10%; H NMR (CDCl )
δ 7.56 (s, 4H), 7.13 (d, J ) 8, 4H), 6.94 (d, J ) 2, 4H), 6.44 (dd,
J ) 2, 8, 4H), 5.26 (s, 4H), 4.99 (AB, J ) 14, ∆υ ) 39 Hz, 8H),
2
3.78 (s, 12H); FAB-MS m/ e M cluster 1220-1230 (1224 100
+
enzyme, in an ideal arrangement for cation-π interac-
+
integral % within cluster); HRMS of M - Li 1226.9399, calcd
tions.
7
9
for C56
40 4
H O12 Br Li: 1226.9413.
In a more general context, it will always be true that
any organic structure will be more polarizable than
water. Thus, it seems safe to say that any enzyme active
site will be more polarizable than water and so better
able to employ London dispersion forces for catalysis. Of
course, there is considerable variability in the polariz-
abilities of amino acid side chains, and it will be interest-
ing to consider which reaction types are best suited to
strong influence by London dispersion interactions.
Ester Hyd r olysis. All tetraacid macrocycles were prepared
from the corresponding tetramethyl esters using the following
hydrolytic procedure. The tetraesters were dissolved in 1-2
mL of DMSO. Thirty equivalents of aqueous CsOH (1.0 M
solution) were added, which caused a white precipitate to form.
Water (1-2 mL) was then added, and the solution was allowed
to stir for 24 h. The solution was then frozen and lyophilized.
The resulting residue was dissolved in a minimum amount of
water and loaded onto a cation exchange column (neutral pH,
+
Dowex 50 × 4, NH
4
form). The material was eluted with
water that had been passed through a Milli-Q purification
system. The fractions containing host were identified by their
UV activity on TLC silica gel plates. The appropriate fractions
were then combined and lyophilized to give the acid com-
pounds. Standard aqueous solutions of these host compounds
were prepared by dissolving them in borate-d buffer (50-70%
yields).
Con clu sion s
The current studies establish that precisely positioning
substituents within putative van der Waals contact with
a transition state can enhance catalysis. Interestingly,
the effectiveness of a given substituent correlates well
with the polarizability of the substituent, suggesting a
special role for London dispersion interactions in transi-
tion state stabilization. This is a potentially general
effect that should have significant implications for a
number of biological catalysts.
1
Host 3, Tetr a a cid .
3
H NMR (10% CD CN/90% borate,
referenced to internal DMG δ 1.09) δ 7.21 (d, J ) 8, 4H), 7.17
(s, 4H), 7.07 (bs, 4H), 6.63 (d, J ) 8, 4H), 5.19 (s, 4H), 5.05
(
AB, J ) 13, ∆υ ) 37 Hz, 8H), 2.20 (s, 12H).
1
Host 5, Tetr a a cid . H NMR (10% CD
3
CN/90% borate,
referenced to internal DMG δ 1.09) δ 7.57 (s, 4H), 7.24 (d, J )
8
, 4H), 7.09 (bs, 4H), 6.65 (d, J ) 8, 4H), 5.22 (s, 4H), 5.13
Exp er im en ta l Section
(AB, J ) 14, ∆υ ) 48 Hz, 8H).
Host 6, Tetr a a cid . 1H NMR (10% CD
CN/90% borate,
Gen er a l Meth od s. Instrumental and analytical methods
3
1
,10,13
were as in previous work from these laboratories.
referenced to internal DMG δ 1.09) δ 7.71 (s, 4H), 7.25 (d, J )
8, 4H), 7.10 (bs, 4H), 6.64 (d, J ) 8, 4H), 5.22 (s, 4H), 5.09
(AB, J ) 14, ∆υ ) 52 Hz, 8H).
Hosts 1, 2, and 4 were synthesized according to literature
1
procedures. Compound 8 was commercially available. Guests
9
and 10 were prepared by exhaustive alkylation of the
Kin etics of Su lfon iu m Sa lt Dea lk yla tion . Stock solu-
tions of hosts 1-6 were prepared in borate-d buffer. Stock
solutions of KI, KSCN, KHP (internal integration standard,
potassium hydrogen phthalate), 7, and 8 for the HPLC studies
were made by weighing each solid and dissolving it in the
nondeuterated borate buffer. The reaction rates were moni-
tored by integration of substrate and internal standard peak
areas from an HPLC trace using a Waters Baseline 810
software package. Each kinetic run was performed at least
twice. A representative reaction mixture consisted of 316 µM
host 1, 338 µM guest 7, 0.01160 M KI, and 513 µM KHP for a
total volume of 500 µL in borate buffer. The ratio of host to
guest was varied with the binding constant to keep the
percentage of guest bound in the range of 60 to 80%.
appropriate quinoline and amine with iodomethane. Guest 7
was prepared by refluxing trimethyloxonium tetrafluoroborate
with the corresponding sulfide.
Ma cr ocycliza tion s. The tetramethyl ester of hosts 3, 5,
and 6 were prepared by a condensation of the appropriate
ethenoanthracene with the corresponding bis(halomethyl)-
benzene in a suspension of cesium carbonate in anhydrous
CH
CN or DMF following the procedure developed for host 1.1
3
(11) Cantoni, G. L. Annu. Rev. Biochem. 1975, 49, 435; Maw, G. A.
The Chemistry of the Sulphonium Group; Wiley: New York, 1981;
Chapter 17. Lederer, E. Q. Rev. Chem. Soc. 1969, 23, 453. Walsh, C.
Enzyme Reaction Mechanisms; Freeman: New York, 1979; pp 851-
8
63.
(
For each experiment, the reaction solution is prepared in
an Eppendorf tube without the nucleophile. The solution of
nucleophile is then added, and the tube is shaken vigourously
just prior to the first injection of sample for the first time point.
12) Cheng, X.; Kumar, S.; Posfai, J .; Pflugrath, J . W.; Roberts, R.
J . Cell 1993, 74, 299-307.
13) Barrans, R. E., J r.; Dougherty, D. A. Supramol. Chem. 1994,
, 121-130.
(
4