14641-93-1Relevant academic research and scientific papers
Characterization of properties and transglycosylation abilities of recombinant α-galactosidase from cold-adapted marine bacterium pseudoalteromonas KMM 701 and its C494N and D451A mutants
Bakunina, Irina,Slepchenko, Lubov,Anastyuk, Stanislav,Isakov, Vladimir,Likhatskaya, Galina,Kim, Natalya,Tekutyeva, Liudmila,Son, Oksana,Balabanova, Larissa
, (2018/10/20)
A novel wild-type recombinant cold-active α-D-galactosidase (α-PsGal) from the cold-adapted marine bacterium Pseudoalteromonas sp. KMM 701, and its mutants D451A and C494N, were studied in terms of their structural, physicochemical, and catalytic properties. Homology models of the three-dimensional α-PsGal structure, its active center, and complexes with D-galactose were constructed for identification of functionally important amino acid residues in the active site of the enzyme, using the crystal structure of the α-galactosidase from Lactobacillus acidophilus as a template. The circular dichroism spectra of the wild α-PsGal and mutant C494N were approximately identical. The C494N mutation decreased the efficiency of retaining the affinity of the enzyme to standard p-nitrophenyl-α-galactopiranoside (pNP-α-Gal). Thin-layer chromatography, matrix-assisted laser desorption/ionization mass spectrometry, and nuclear magnetic resonance spectroscopy methods were used to identify transglycosylation products in reaction mixtures. α-PsGal possessed a narrow acceptor specificity. Fructose, xylose, fucose, and glucose were inactive as acceptors in the transglycosylation reaction. α-PsGal synthesized -α(1→6)- and -α(1→4)-linked galactobiosides from melibiose as well as -α(1→6)- and -α(1→3)-linked p-nitrophenyl-digalactosides (Gal2-pNP) from pNP-α-Gal. The D451A mutation in the active center completely inactivated the enzyme. However, the substitution of C494N discontinued the Gal-α(1→3)-Gal-pNP synthesis and increased the Gal-α(1→4)-Gal yield compared to Gal-α(1→6)-Gal-pNP.
The kinetics of p-nitrophenyl-β-d-cellobioside hydrolysis and transglycosylation by Thermobifida fusca Cel5Acd
Dingee, John W.,Anton, A. Brad
scheme or table, p. 2507 - 2515 (2011/01/04)
The hydrolysis of p-nitrophenyl-β-1,4-cellobioside (pNP-G2) by the catalytic domain of the retaining-family 5-2 endocellulase Cel5A from Thermobifida fusca (Cel5Acd) was studied. The dominant reaction pathway involves hydrolysis of the aglyconic bond, producing cellobiose (G2) and a 'reporter' species p-nitrophenol (pNP), which was monitored spectrophotometrically to track the reaction. We also detected the production of cellotriose (G3) and p-nitrophenyl-glucoside (pNP-G1), confirming the presence of a competing transglycosylation pathway. We use a mechanistic model of hydrolysis and transglycosylation to derive an expression for the rate of pNP-formation as a function of enzyme concentration, substrate concentration, and several lumped kinetics parameters. The derivation assumes that the quasi-steady-state assumption (QSSA) applies for three intermediate species in the mechanism; we determine conditions under which this assumption is rigorously justified. We integrate the rate expression and compare its integral form to pNP-versus-time data collected for a range of enzyme and substrate concentrations. The integral comparison gives a stringent test of the mechanistic model, and it serves to quantify the lumped kinetics parameters with good statistical precision, particularly a previously unidentified parameter that determines the selectivity of hydrolysis versus transglycosylation. The integrated rate expression accounts well for pNP-versus-time data under all circumstances we have investigated.
Synthesis and characterization of bis(glycosylamino)benzenes based on reducing disaccharides
Metlitskikh,Koroteev,Nifantyev
, p. 1272 - 1275 (2007/10/03)
Synthesis of bis(glycosylamino)benzenes, derived from disaccharides lactose, maltose, and cellobiose, by direct condensation and their characterization are described.
Synthesis and characterisation of novel chromogenic substrates for human pancreatic α-amylase
Damager, Iben,Numao, Shin,Chen, Hongming,Brayer, Gary D.,Withers, Stephen G.
, p. 1727 - 1737 (2007/10/03)
Derivatives of maltose and maltotriose were chemically synthesised as substrates for human pancreatic α-amylases and subjected to kinetic analysis. Rates measured were shown to reflect both hydrolysis and transglycosylation reactions. 4-O-Methylated derivatives of these substrates underwent only hydrolysis, thereby simplifying kinetic analyses. These modified substrates may be used for the detection and kinetic analysis of α-amylases, and are useful in rapidly screening for novel α-amylase inhibitors and for subsequent kinetic characterisation.
Study of the action of human salivary alpha-amylase on 2-chloro-4-nitrophenyl α-maltotrioside in the presence of potassium thiocyanate
Suganuma, Toshihiko,Maeda, Yoshiaki,Kitahara, Kanefumi,Nagahama, Tomonori
, p. 219 - 227 (2007/10/03)
The degradation mechanism of a synthetic substrate, 2-chloro-4-nitrophenyl α-maltotrioside (CNP-G3), by human salivary alpha-amylase (HSA) was investigated by kinetic and product analyses. It was observed that the enzyme attacked the various CNP-maltooligosaccharides (CNP-G3, to CNP-G6) releasing free CNP. Addition of 500 mM potassium thiocyanate (KSCN) was also found to greatly increase the rates of CNP-release. It was the fastest with CNP-G3, and, in the presence of KSCN, was almost comparable to that of degradation of maltopentaose (G5). On the other hand, addition of KSCN decreased the rate of cleavage between glucan-glucan bonds in maltopentaose. Product analysis showed that KSCN addition altered the cleavage distribution which occurred 100% at the bond between CNP and G3, and that product distribution of free CNP was largely dependent on substrate concentration. Formation of CNP-G6, a larger product than the original substrate CNP-G3, was found to be present in the digest at high concentrations of substrate and in the presence of KSCN. Based on these results, a degradation pathway for CNP-G3 involving transglycosylation besides direct hydrolysis is proposed. The increase of the CNP-release by the addition of KSCN would result from a corresponding increase in the interaction between the CNP moiety and the corresponding subsite near the catalytic site, as well as the enhancement of the catalytic efficiency.
Subsite mapping of porcine pancreatio alpha-amylase I and II using 4-nitrophenyl-α-maltooligosaccharides
Ajandouz, El Hassan,Marchis-Mouren, Guy J.
, p. 267 - 278 (2007/10/02)
The catalytic efficiency (kcat/Km) and the cleaved bond distribution for the nitrophenylated maltooligosaccharides, p-NPGIcn (2n7) hydrolysed by porcine pancreatic alpha-amylase isozymes I and II were determined. the subsite affinities (Ai) were calculated from the p-NPGlcn (4n7) hydrolysis data.Five subsites (-3 to 2) bind glucosidic residues with a positive affinity.No additional subsites could be detected both at the reducing end (3,4,5)and at the nonreducing end (-4,-5,-6).The energetic profiles of both isozymes are similar.The energetic profile of PPA differs from other alpha-amylases by having both a small number of subsites, and a catalytic subsite with a high positive affinity.Excellent agreement was found between observed catalytic efficiency values and those calculated from the subsite affinities. Keywords: alpha-Amylase isozymes; Active centre; Subsite structure; Energetic profile; Porcine pencreatic alpha-amylaseKeywords: alpha-Amylase isozymes; Active centre; Subsite structure; Energetic profile; Porcine Pancreatic alpha-amylase
Stereoselective Thioglycoside Syntheses. Part 6. Aryl 4-Thiomaltooligosacchrides as Chromogenic Substrates for Kinetic Studies with α-Amylase
Blanc-Muesser, Michele,Defaye, Jacques,Driguez, Hugues,Marchis-Mouren, Guy,Seigner, Christiane
, p. 1885 - 1889 (2007/10/02)
Nucleophilic bimolecular substitution, of either o- or p-nitrophenyl 2,3,6-tri-O-benzoyl-4-O-trifluoromethylsulphonyl-α-D-galactopyranoside (1) or (2) with the sodium salt of 1-thio-α-D-glucopyranose in hexamethylphosphoramide afforded, after the usual deprotection sequences, o- and p-nitrophenyl 4-thio-α-maltosides (7) and (8).A similar synthetic scheme with (1) and the 1-α-thiolate of 4-thiomaltose (12) led to o-nitrophenyl 4,4'-dithio-α-maltotrioside (15).These 4-thio-oligosaccharides and their corresponding oxygen analogues were used, in comparative assays, as chromogenic substrates with porcine and human pancreatic α-amylases.In both series, enzymic velocity was higher for the maltotrioside derivatives than for the maltodisaccharides. o-Nitrophenyl glycosides behave as better substrates than the corresponding para isomers.Replacement of intersaccharide oxygen atoms by sulphur increased slightly the Michaelis constant, but had a negative effect on the hydrolysis rate.As a consequence, 4-thiomaltosyloligosaccharides were less sensitive substrates for pig pancreatic α-amylase as compared with their O-glycosyl counterparts.However, as the former class of compounds is split exclusively at the chromogenic site, they appear to be substrates of interest for direct kinetic studies with α-amylases.
