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5-Chlorouridine, a derivative of uridine, is a synthetic nucleoside that has been modified with a chlorine atom at the 5-position of the pyrimidine ring. This modification provides unique properties and potential applications in various fields, particularly in the study of cellular processes and enzyme activity.

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  • 2880-89-9 Structure
  • Basic information

    1. Product Name: 5-Chlorouridine
    2. Synonyms: 5-Chloro-1-[(3R,4S,5R)-3,4-dihydroxy-5-(hydroxymethyl)oxolan-2-yl]pyrimidine-2,4-dione;5-CHLOROURIDINE;5-Chloro-D-uridine;NSC 146433
    3. CAS NO:2880-89-9
    4. Molecular Formula: C9H11ClN2O6
    5. Molecular Weight: 278.65
    6. EINECS: 1806241-263-5
    7. Product Categories: Pharmaceutical Raw Materials;Nucleotides and Nucleosides;Bases & Related Reagents;Nucleotides
    8. Mol File: 2880-89-9.mol
  • Chemical Properties

    1. Melting Point: 215-217°C
    2. Boiling Point: N/A
    3. Flash Point: N/A
    4. Appearance: /
    5. Density: 1.804 g/cm3
    6. Refractive Index: 1.677
    7. Storage Temp.: -20?C Freezer
    8. Solubility: DMSO (Slightly), Methanol, Water (Slightly, Sonicated)
    9. PKA: 7.73±0.10(Predicted)
    10. CAS DataBase Reference: 5-Chlorouridine(CAS DataBase Reference)
    11. NIST Chemistry Reference: 5-Chlorouridine(2880-89-9)
    12. EPA Substance Registry System: 5-Chlorouridine(2880-89-9)
  • Safety Data

    1. Hazard Codes: N/A
    2. Statements: N/A
    3. Safety Statements: N/A
    4. WGK Germany:
    5. RTECS:
    6. HazardClass: N/A
    7. PackingGroup: N/A
    8. Hazardous Substances Data: 2880-89-9(Hazardous Substances Data)

2880-89-9 Usage

Uses

Used in Biochemical Research:
5-Chlorouridine is used as a biochemical tool for determining the activity of enzymes that convert cytosine derivatives to uracil derivatives in cells, tissues, and organisms. Its unique chemical structure allows for the specific detection and measurement of these enzyme activities, providing valuable insights into cellular processes and potential therapeutic targets.
Used in Enzyme Activity Assays:
In enzyme activity assays, 5-Chlorouridine serves as a substrate or inhibitor, enabling researchers to study the kinetics and mechanisms of enzymes involved in the conversion of cytosine to uracil. This information is crucial for understanding the role of these enzymes in various biological processes and for the development of targeted therapies.
Used in Drug Discovery and Development:
5-Chlorouridine's ability to modulate enzyme activity makes it a valuable compound in drug discovery and development. By studying its interactions with enzymes, researchers can identify potential drug targets and design novel therapeutic agents that can regulate these enzymes, leading to the development of new treatments for various diseases.
Used in Diagnostic Applications:
Due to its unique chemical properties, 5-Chlorouridine can be used in diagnostic applications to detect and measure the activity of specific enzymes in biological samples. This can aid in the diagnosis of certain conditions and the monitoring of treatment efficacy.

Check Digit Verification of cas no

The CAS Registry Mumber 2880-89-9 includes 7 digits separated into 3 groups by hyphens. The first part of the number,starting from the left, has 4 digits, 2,8,8 and 0 respectively; the second part has 2 digits, 8 and 9 respectively.
Calculate Digit Verification of CAS Registry Number 2880-89:
(6*2)+(5*8)+(4*8)+(3*0)+(2*8)+(1*9)=109
109 % 10 = 9
So 2880-89-9 is a valid CAS Registry Number.
InChI:InChI=1/C9H11ClN2O6/c10-3-1-12(9(17)11-7(3)16)8-6(15)5(14)4(2-13)18-8/h1,4-6,8,13-15H,2H2,(H,11,16,17)/t4-,5-,6-,8-/m1/s1

2880-89-9SDS

SAFETY DATA SHEETS

According to Globally Harmonized System of Classification and Labelling of Chemicals (GHS) - Sixth revised edition

Version: 1.0

Creation Date: Aug 20, 2017

Revision Date: Aug 20, 2017

1.Identification

1.1 GHS Product identifier

Product name 5-Chlorouridine

1.2 Other means of identification

Product number -
Other names 5-chloro-uridine

1.3 Recommended use of the chemical and restrictions on use

Identified uses For industry use only.
Uses advised against no data available

1.4 Supplier's details

1.5 Emergency phone number

Emergency phone number -
Service hours Monday to Friday, 9am-5pm (Standard time zone: UTC/GMT +8 hours).

More Details:2880-89-9 SDS

2880-89-9Relevant articles and documents

An efficient synthetic approach to 6,5′-(S)- and 6,5′-(R)- cyclouridine

Theile, Christopher S.,McLaughlin, Larry W.

, p. 5587 - 5589 (2012)

Here we present new routes for the efficient syntheses of 6,5′-(S)- and 6,5′-(R)-cyclouridine. The syntheses utilize readily accessible uridine as a starting material. This route to the R diastereomer is significantly more efficient than previous synthetic efforts, allowing us to obtain large amounts of pure material for future biological testing.

Use of nucleoside phosphorylases for the preparation of 5-modified pyrimidine ribonucleosides

Alexeev, Cyril S.,Drenichev, Mikhail S.,Dorinova, Evgeniya O.,Esipov, Roman S.,Kulikova, Irina V.,Mikhailov, Sergey N.

, (2019/11/13)

Enzymatic transglycosylation, a transfer of the carbohydrate moiety from one heterocyclic base to another, is catalyzed by nucleoside phosphorylases (NPs) and is being actively developed and applied for the synthesis of biologically important nucleosides. Here, we report an efficient one-step synthesis of 5-substitited pyrimidine ribonucleosides starting from 7-methylguanosine hydroiodide in the presence of nucleoside phosphorylases (NPs).

Direct One-Pot Synthesis of Nucleosides from Unprotected or 5-O-Monoprotected d -Ribose

Downey, A. Michael,Richter, Celin,Pohl, Radek,Mahrwald, Rainer,Hocek, Michal

supporting information, p. 4604 - 4607 (2015/09/28)

New, improved methods to access nucleosides are of general interest not only to organic chemists but to the greater scientific community as a whole due their key implications in life and disease. Current synthetic methods involve multistep procedures employing protected sugars in the glycosylation of nucleobases. Using modified Mitsunobu conditions, we report on the first direct glycosylation of purine and pyrimidine nucleobases with unprotected d-ribose to provide β-pyranosyl nucleosides and a one-pot strategy to yield β-furanosides from the heterocycle and 5-O-monoprotected d-ribose.

In search of flavivirus inhibitors: Evaluation of different tritylated nucleoside analogues

Chatelain, Grégory,Debing, Yannick,De Burghgraeve, Tine,Zmurko, Joanna,Saudi, Milind,Rozenski, Jef,Neyts, Johan,Van Aerschot, Arthur

, p. 249 - 255 (2013/10/01)

Following up on a hit that was identified in a large scale cell-based antiviral screening effort, a series of triphenylmethyl alkylated nucleoside analogues were synthesized and evaluated for their in vitro antiviral activities against the dengue virus (DENV) and the yellow fever virus (YFV). Hereto, trityl moieties were attached at various positions of the sugar ring combined with subtle variations of the heterocyclic base. Several triphenylmethyl modified nucleosides were uncovered being endowed with submicromolar in vitro antiviral activity against the YFV. The most selective inhibitor in this series was 3′,5′-bis-O-tritylated-5-chlorouridine (1b) affording a selectivity index of over 90, whereas the 3′,5′-bis-O-tritylated inosine congener (5b) displayed the highest activity, but proved more toxic. The finding of these lipophilic structures being endowed with high antiviral activity for flaviviruses, should stimulate the interest for further structureeactivity research.

Triazole pyrimidine nucleosides as inhibitors of Ribonuclease A. Synthesis, biochemical, and structural evaluation

Parmenopoulou, Vanessa,Chatzileontiadou, Demetra S.M.,Manta, Stella,Bougiatioti, Stamatina,Maragozidis, Panagiotis,Gkaragkouni, Dimitra-Niki,Kaffesaki, Eleni,Kantsadi, Anastassia L.,Skamnaki, Vassiliki T.,Zographos, Spyridon E.,Zounpoulakis, Panagiotis,Balatsos, Nikolaos A.A.,Komiotis, Dimitris,Leonidas, Demetres D.

, p. 7184 - 7193 (2013/01/15)

Five ribofuranosyl pyrimidine nucleosides and their corresponding 1,2,3-triazole derivatives have been synthesized and characterized. Their inhibitory action to Ribonuclease A has been studied by biochemical analysis and X-ray crystallography. These compounds are potent competitive inhibitors of RNase A with low μM inhibition constant (Ki) values with the ones having a triazolo linker being more potent than the ones without. The most potent of these is 1-[(β-d-ribofuranosyl)-1,2,3-triazol-4-yl]uracil being with Ki = 1.6 μM. The high resolution X-ray crystal structures of the RNase A in complex with three most potent inhibitors of these inhibitors have shown that they bind at the enzyme catalytic cleft with the pyrimidine nucleobase at the B1 subsite while the triazole moiety binds at the main subsite P1, where P-O5′ bond cleavage occurs, and the ribose at the interface between subsites P1 and P0 exploiting interactions with residues from both subsites. The effect of a susbsituent group at the 5-pyrimidine position at the inhibitory potency has been also examined and results show that any addition at this position leads to a less efficient inhibitor. Comparative structural analysis of these RNase A complexes with other similar RNase A - ligand complexes reveals that the triazole moiety interactions with the protein form the structural basis of their increased potency. The insertion of a triazole linker between the pyrimidine base and the ribose forms the starting point for further improvement of these inhibitors in the quest for potent ribonucleolytic inhibitors with pharmaceutical potential.

Ionic liquid mediated synthesis of 5-halouracil nucleosides: Key precursors for potential antiviral drugs

Kumar, Vineet,Malhotra, Sanjay V.

experimental part, p. 821 - 834 (2010/08/20)

Synthesis of antiviral 5-halouracil nucleosides, also used as key precursors for the synthesis of other potential antiviral drugs, has been demonstrated using ionic liquids as convenient and efficient reaction medium.

Highly efficient method for C-5 halogenation of pyrimidine-based nucleosides in ionic liquids

Kumar, Vineet,Yap, Jeremy,Muroyama, Andrew,Malhotra, Sanjay V.

experimental part, p. 3957 - 3962 (2010/03/26)

A novel, highly efficient, convenient, and benign methodology for C-5 halogenation of pyrimidine-based nucleosides has been developed using N-halosuccinimides as halogenating reagents without using any catalyst in ionic liquid medium. The ionic liquids were successfully recovered and reused for all the reactions. Georg Thieme Verlag Stuttgart.

Anti-HCV nucleoside derivatives

-

, (2008/06/13)

The present invention comprises novel and known purine and pyrimidine nucleoside derivatives which have been discovered to be active against hepatitis C virus (HCV). The use of these derivatives for the treatment of HCV infection is claimed as are the novel nucleoside derivatives disclosed herein.

Lipid esters of nucleoside monophosphates and their use as immunosuppressive drugs

-

, (2008/06/13)

The present invention is directed to new nucleoside monophosphate derivatives of lipid ester residues of general formula (I) wherein R1 represents an optionally substituted alkyl chain having 1-20 carbon atoms; R2 represents hydrogen, an optionally substituted alkyl chain having 1-20 carbon atoms; R3, R4 and R5 represent hydrogen, hydroxy, azido, amino, cyano, or halogen; X represents a valence dash, oxygen, sulfur, a sulfinyl or sulfonyl group; Y represents a valence dash, an oxygen or sulfur atom; B represents a purine and/or pyrimidine base; with the proviso that at least one of the residues R3 or R5 is hydrogen; to their tautomers and their physiologically acceptable salts of inorganic and organic acids and/or bases, as well as to processes for their preparation, and to drugs containing said compounds.

A mild and efficient methodology for the synthesis of 5-halogeno uracil nucleosides that occurs via a 5-halogeno-6-azido-5,6-dihydro intermediate

Kumar,Wiebe,Knaus

, p. 2005 - 2010 (2007/10/02)

A mild and efficient methodology for the synthesis of 5-halogeno (iodo, bromo, or chloro) uracil nucleosides has been developed. 5-Halo-2'-deoxyuridines 4a-c (84-95%), 5-halouridines 7a-c (45-95%), and 5-haloarabinouridines 8a-c (65-95%) were synthesized in good to excellent yields by the reaction of 2'-deoxyuridine (2), uridine (5) and arabinouridine (6), respectively with iodine monochloride, or N-bromo (or chloro)succinimide, and sodium azide at 25-45°C. These C-5 halogenation reactions proceed via a 5-halo-6-azido-5,6-dihydro intermediate (3), from which HN3 is eliminated, to yield the 5-halogeno uracil nucleoside. The 5-halo-6-azido-5,6-dihydro intermediate products (10a, 10b) could be isolated from the reaction of 3',5'-di-O-acetyl-2'-deoxyuridine (9) with iodine monochloride or N-bromosuccinimide and sodium azide at 0°C. The isolation of 10a, 10b indicates that the C-5 halogenation reaction proceeds via a 5-halo-6-azido-5,6-dihydro intermediate.

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