ACS Medicinal Chemistry Letters
Letter
activity as in 12t and 12w. In these cases, the inhibition
constants were approximately 2- and 3-fold lower for the 3- vs
4- halogenated analogues, cf. 12t/12u and 12w/12x. A 3-fluoro
substituent (12t) provided the most potent compound in this
series with a Ki = 0.28 μM. The incorporation of a halogen at
C2 removed all activity (see 12s and 12v) as did the
introduction of a second fluoro substituent as in 12y. Again
all active compounds in this series showed excellent selectivity
for SaBPL over the human homologue. In addition, 12t, 12u,
12w, and 12x did not show cytotoxicity toward mammalian
HepG2 cells at a single concentration of 40 μg/mL.
ASSOCIATED CONTENT
* Supporting Information
The Supporting Information is available free of charge on the
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Biological assays, synthetic procedures, and data for
AUTHOR INFORMATION
Corresponding Author
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Finally, to demonstrate that compounds inhibited protein
biotinylation in vivo, antibacterial susceptibility assays were
performed using a S. aureus strain engineered to overexpress the
BPL target. Similar approaches to establish the mechanism of
action have been employed on M. tuberculosis,10 but not
previously for S. aureus. Bacteria were grown in media
containing 16 μg/mL of either 12g (series 1) or 12t (series
2) for 16 h, with the optical density of the culture measured
every 30 min. Overexpression of the BPL target abolished the
antibacterial activity of both compounds, as S. aureus grew at
the same rate as nontreated controls (Figure 5b,c). Bacteria
harboring the parent cloning vector pCN5122 that did not
express additional BPL, remained highly sensitive to both
inhibitors and failed to grow in their presence. Together these
data show that the mechanism of action of 12g (from series 1)
and 12t (series 2) is clearly via the inhibition of BPL.
The 1-benzyl substituted 1,2,3-triazoles reported here
represent a new class of BPL inhibitors that lack the adenine
group, or analogue thereof, found in all other isostere-based
BPL inhibitors. These compounds have much reduced
molecular weight and are relatively easy to prepare.
Importantly, the biochemical and microbiological data provide
a clear relationship between in vitro inhibition of BPL and anti-
S. aureus activity, with our most potent enzyme inhibitors
generally providing our most promising antibacterials (see 12j,
12p, 12r, 12t, 12u, and 12w). In antibiotic drug discovery, this
is not always the case as a number of external factors contribute
to bioactivity, such as cell permeability and susceptibility to
efflux mechanisms and metabolic degradation.
The best lead compound in this new series (12t) with a 3-
fluoro substituted benzyl group, has a Ki of 280 nM against
SaBPL and demonstrated mechanism of antibacterial activity
consistent with the inhibition of protein biotinylation. It is
essentially nontoxic to mammalian HepG2 cells and is devoid
of activity against human BPL. This compares to the extended
1,2,3-triazole 11 that has Ki of 90 nM against SaBPL. This
compound provides clear interactions with both the biotin and
adenine pockets of SaBPL and, like the new benzyl series, is
essentially inactive against human BPL.3 Our initial SAR data
on the new benzyl series provides confidence that further
optimization of in vitro inhibition will lead to improved
antibacterial activity. In silico docking supports a binding
mechanism in which the benzyl group interacts with the ribose
pocket of SaBPL. The compounds reported here provide
important new scaffolds for further chemical modification and
activity optimization, specifically to interact with the adjacent
adenyl-binding site in the enzyme. Such studies are currently
underway, particularly the inclusion of extended substituents on
the benzyl group and also substitution at C5 of the triazole.
Present Address
∥School of Medical Sciences (Pharmacology) and Bosch
Institute, The University of Sydney, Sydney, New South
Wales 2006, Australia.
Author Contributions
The manuscript was written through contributions of all
authors. Medicinal chemistry was performed by J.F., W.T., S.C.,
and A.D.A., biochemical assays were performed by A.S.P. and
S.W.P., antibacterial susceptibility assays were performed by
D.H. and A.H. under the guidance of S.W.P. and G.W.B., and
cell culture assays were performed by A.H. and S.W.P.
Funding
This work was supported by the National Health and Medical
Research Council of Australia (application APP1068885), the
Centre for Molecular Pathology, University of Adelaide, and
Adelaide Research and Innovation’s Commercial Accelerator
Scheme. We are grateful to the Wallace and Carthew families
for their financial support of this work.
Notes
The authors declare no competing financial interest.
ACKNOWLEDGMENTS
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We are grateful to the Institute for Photonics and Advanced
Sensing (IPAS) for providing access to analytical HPLC and
the National Health and Medical Research Council (NHMRC)
and Australian Research Council (ARC) for funding. We also
thank Dr. Beatriz Blanco Rodriguez for her critical comments
on the manuscript.
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