SCHEME 4. Synthesis of Ether-Linked Dinucleosides with
Ribose and Xylose Stereochemistry
4H), 4.08-4.28 (m, 4H), 4.33 (dd, J ) 3.9, 11.6 Hz, 1H), 4.49 (d,
J ) 10.5 Hz, 1H), 4.63 (t, J ) 3.7 Hz, 1H), 4.72 (t, J ) 3.6 Hz,
1H), 5.23 (d, J ) 10.2 Hz, 1H), 5.33 (d, J ) 17.2 Hz, 1H),
5.76-5.77 (m, 2H), 5.89-6.02 (m, 1H). A mixture of 64 (0.27 g,
1.03 mmol), 5 (1 g, 2.08 mmol), tetrabutylammonium bromide
(0.067 g, 0.20 mmol), and NaOH (0.66 g, 16.5 mmol) in water
(5.0 mL) was heated with stirring at 70 °C for 70 h. The mixture
was then extracted with CH2Cl2, and the organic layer was washed
with water and dried. Removal of solvent afforded a syrupy residue,
which was chromatographed (EtOAc-petroleum ether, 3:17) giving
7 (0.45 g, 82%) as a colorless sticky liquid: [R]25D +119.0 (c 0.44,
CHCl3); IR (neat) 1375, 1654 cm-1; MS (FAB) m/z 667 (M +
1
Na), 629 (M - CH3); H NMR δ 1.35 (s, 6H), 1.36 (s, 3H), 1.37
(s, 3H), 1.45 (s, 3H), 1.55 (s, 3H), 1.59 (s, 3H), 1.60 (s, 3H),
3.77-3.95 (m, 6H), 3.97-4.06 (m, 3H), 4.08-4.13 (m, 5H),
4.34-4.35 (m, 1H), 4.59 (t, J ) 4.0 Hz, 1H), 4.66 (t, J ) 3.9 Hz,
1H), 4.71 (t, J ) 3.7 Hz, 1H), 5.22 (d, J ) 9.6 Hz, 1H), 5.32 (d,
J ) 17.2 Hz, 1H), 5.73-5.76 (m, 3H), 5.90-6.03 (m, 1H); 13C
NMR δ 25.1 (CH3), 26.1 (CH3), 26.4 (CH3), 26.7 (CH3), 65.0 (CH2),
67.7 (CH2), 68.2 (CH2), 71.5 (CH2), 74.8 (CH), 77.0 (CH), 77.1
(CH), 77.4 (CH), 77.7 (CH), 77.8 (CH), 78.0 (CH), 78.4 (CH),
78.5 (CH), 79.3 (CH), 103.7 (CH), 103.71 (CH), 103.9 (CH), 109.5
(q), 112.6 (q), 112.64 (q), 112.7 (q), 117.6 (CH2), 134.5 (CH). Anal.
Calcd for C31H48O14, C, 57.75; H, 7.50. Found: C, 57.51; H, 7.63.
General Method of Preparation of Uracil Nucleosides. The
general method of the preparation of uracil nucleosides is illustrated
by that of 12 via the combination of method A and method B.
Method A: Deprotection of Pseudosaccharide Methyl Ethers
and Subsequent Acetylation. A stock solution was prepared by
mixing CH3CN, water, and concd H2SO4 in a volumetric ratio 18:
6:1. A mixture of 10 (0.4 g, 0.68 mmol) in this solution (15 mL)
was stirred at 25 °C for 24 h. The solution was neutralized by adding
solid CaCO3, and the mixture was filtered. The residue was washed
with acetonitrile and the combined washings were concentrated
under reduced pressure. To a solution of the resulting deprotected
compound in pyridine (10 mL) were added acetic anhydride (0.52
mL, 5.77 mmol) and a catalytic amount of DMAP at 0 °C. The
mixture was stirred at 25 °C for 4 h. Excess Ac2O was destroyed
by adding water, and the resulting AcOH was removed by
azeotropic distillation with toluene. The residue was chromato-
graphed (EtOAc-petroleum ether, 9:1) to give 11 as a syrupy liquid,
which was transglycosylated as described below.
Method B: Transglycosylation with Uracil. To a solution of
this material (0.35 g, 0.49 mmol) in CH3CN (15 mL) containing
uracil (0.33 g, 2.92 mmol) was added with stirring BSA (1.8 mL,
7.29 mmol), and the mixture was heated at reflux for 1 h. Then
TMSOTf (0.5 mL, 2.48 mmol) was added at 0 °C, and the mixture
was heated at 50 °C for 15 h. The reaction was quenched with
cold saturated NaHCO3 solution. After removal of solvent, the
residue was extracted with ethyl acetate, washed with brine, dried,
and concentrated to afford a sticky liquid, which was chromato-
graphed (CHCl3-MeOH, 24:1) to give 12 (0.3 g, 50%) as a white
solid: mp 138-140 °C; [R]25D -8.4 (c 0.21, CHCl3); IR (neat) 1380,
1695, 1738, 3209, 3509 cm-1; MS (FAB) m/z 899 (M + Na), 877
(M + H); 1H NMR δ 2.11 (s, 3H), 2.13 (s, 3H), 2.15 (s, 3H), 3.46
(s, 3H), 3.51-3.57 (m, 2H), 3.73-4.08 (m, 7H), 4.16-4.27 (m,
6H), 5.18-5.39 (m, 5H), 5.76-6.04 (m, 7H), 7.50 (d, J ) 7.7 Hz,
1H), 7.60 (d, J ) 8.0 Hz, 1H), 7.67 (d, J ) 8.2 Hz, 1H), 9.36 (bs,
1H), 9.42 (bs, 2H); 13C NMR δ 20.7 (CH3), 59.4 (CH3), 69.8 (CH2),
71.9 (CH2), 72.1 (CH2), 74.0 (CH), 75.6 (CH), 77.2 (CH), 78.0
(CH), 80.9 (CH), 81.2 (CH), 81.4 (CH), 87.6 (CH), 88.1 (CH),
90.9 (CH), 102.8 (CH), 103.0 (CH), 103.2 (CH), 117.8 (CH2), 133.7
(CH), 139.8 (CH), 140.0 (CH), 140.6 (CH), 150.4 (q), 150.6 (q),
150.7 (q), 163.5 (q), 169.9 (q), 169.94 (q), 170.2 (q); HRMS (ESI,
positive ion) calcd for C37H44N6O19Na m/z 899.2559, found
899.2498.
alcohol 4 in 88% yield by methylation was converted to the
uracil dinucleoside 20 (51%) and the protected adenine dincleo-
side 21 (21%) (Scheme 4). Similarly, the known4 pseudosac-
charide alcohol 22 afforded the uracil dinucleoside 24 (58%)
and the adenine dinucleoside 25 (31%) via the methyl-capped
pseudosaccharide 23 (Scheme 4). The sets of nucleosides 20/
21 and 24/25 have the ribose and xylose stereochemistry,
respectively.
In conclusion, the synthetic exercise described above revealed
a novel strategy for the synthesis of oligonucleosides having
internucleoside ether linkage as well as furanose rings with
varied stereochemistry. Future development in this strategy will
target the synthesis of oligonucleosides carrying different types
of bases in the same molecule by changing the precursors of
the starting pseudosaccharides. Another important modification
will involve the incorporation of a four-atom internucleoside
ether linkage, as opposed to two-atom in the present case, which
would result in closer RNA analogues consisting of an ether
backbone. The study of the complementary base pairing
interactions in these molecules will be another important topic
of the future research.10
Experimental Section
Pseudotrisaccharide 7. To a solution of the alcohol 4 (Sup-
porting Information) (0.85 g, 2.11 mmol) and triethylamine (0.59
mL) in CH2Cl2 (30 mL) was added dropwise a solution of
CH3SO2Cl (0.21 mL, 2.71 mmol) in CH2Cl2 (5.0 mL) at 0 °C, and
the mixture was stirred at 25 °C for 1 h. The mixture was poured
into crushed ice and stirred for 0.5 h. It was then extracted with
CH2Cl2, and the organic layer was washed with saturated aq
NaHCO3 solution. Removal of solvent from the organic extract gave
mesyl derivative 5 (0.93 g, 92%) as a pale yellow syrupy liquid,
1
which was used without further purification for the next step: H
NMR δ 1.36 (s, 6H), 1.57 (s, 6H), 3.05 (s, 3H), 3.80-3.96 (m,
(10) Although no detailed study has been made regarding the complementary
interaction between the uracil and adenine nucleosides, the 1H NMR spectrum
of a mixture of 17 and 25 indicated downfield shifts of 0.338-0.387 ppm for
the uracil NH protons suggesting H-bonding interaction, albeit small, between
the uracil and the adenine moieties (Supporting Information). A similar interaction
was observed in the CD spectra of 12/21 and 17/25 (Supporting Information).
General Method of Preparation of N-Benzoyladenine
Nucleosides. The general method is illustrated by the synthesis of
25 via the combination of method A and method C.
6862 J. Org. Chem. Vol. 73, No. 17, 2008