ACS Chemical Biology
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NRH + H2O solution was transferred to an NMR tube. A total of 50
μL of D2O was added to the NMR tube to yield a total volume of 500
μL. The NMR tube was vortexed to achieve a homogeneous solution
and then placed in a 37 °C hot water bath for 24 h, after which time a
1H NMR spectrum was taken.
derivatives (Figure 4) affecting HEK293T more than HepG3
cells.
With the present work, we explored the chemical stability of
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the dihydropyridine moiety using H NMR spectroscopy to
evaluate the chemical changes that 1,4-NRH undergoes while
in solution. Other analytical methods, more prevalent in cell
biology and molecular biology, which include mass spectrom-
etry coupled to liquid chromatography, UV spectroscopy, as
well as fluorescence, do not allow the characterization of the
Figure 4, Panel B: 50 mg of 1,4-NRH was dissolved in 2.5 mL of
sodium phosphate buffer (500 mM, pH = 6.0). A total of 450 μL of
the 1,4-NRH + buffer solution was transferred to an NMR tube. A
total of 50 μL of D2O was added to the NMR tube to yield a total
volume of 500 μL. The NMR tube was vortexed to achieve a
homogeneous solution and then placed in a 37 °C hot water bath for
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changes as they happen; H NMR spectroscopy provides this
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30 min, after which time a H NMR spectrum was taken.
flexibility. Having explored the stability of 1,4-NRH and found
that it correlates quite closely to that of NAD(P)H with regard
to its reactivity to oxygen and ability to isomerize to 1,6-NRH,
we chemically synthesized and isolated the pure form of the
other isomers of 1,4-NRH and explored the integrity of the
heterocycle. We demonstrated here that 1,4-NRH’s isomers
inhibited NQO2 and that 1,4-NRH can also generate glycating
entities. We observed that the addition of water on 1,4-NRH
was rapid in phosphate-containing buffers, and that decom-
position led to intermediates which readily react forming Shiff
bases, those of solvent-exposed lysine residues of proteins of
the like of BSA. While 1,4-NRH might not be overly abundant,
its chemical reactivity toward protein residues could provide
some evidence that intracellular NADH might promote protein
aging, especially in organelles where it is the most abundant,
the mitochondrion. Such conjugation is particularly relevant to
cellular regulation for which nonreversible protein modifica-
tions could lead to protein loss of function and over time to the
aging of the proteome. Therefore, NQO2’s role in the
maintenance of cellular homeostasis might be less about the
detoxification of xenobiotics and more about the removal of
endogenous excess 1,4-NRH, generated from excess NADH.
Such a paradox highlights a new role for NQO2 activity, as
its enzymatic activity has dual functions: reduction of quinones
in a detoxification process and oxidation of NRH to NR+ to
maintain low NRH intracellular levels. This work provides
some insights as to how NAD(P)H:quinone oxidoreductase 1
(NQO1), the homologue of NQO2 which uses NADH and
NADPH as substrates, might be interacting with the respective
isomers of its dinucleotide substrates. Enzymes that reduce the
levels of unbound NADH, like NQO1, would prevent the
occurrence of these derivatives. While the cellular mechanisms
underpinning the observed outcomes remain to be inves-
tigated, the role of excess NADH and its ability to chemically
isomerize and generate endogenous 1,2- and 1−6-NADH
isomers as well as Schiff-base adducts could be a link between
metabolic dysfunction and intracellular NADH overabun-
dance.
Isomerism of NRH and NR+. 1,4-NRH was coincubated with
NR+ in D2O (final concentration 10 mM of each component). Under
these conditions, the 1,6-NRH isomer formed and could be detected
after 100 h. Products that can readily be identified include alpha and
beta-ribose, nicotinamide, NR+, and 1,6-NRH. The appearance of
products with aliphatic hydrogens consistent with structures proposed
by Margoli via the intermediacy of NR(OH)H, which can also
generate decomposition products, remain to be characterized.
Cell Culture. Human Embryonic Kidney (HEK293T) and
Hepatoma (HepG3) cells were purchased from American Type
Culture Collection (ATCC). Cells were grown at 37 °C in a 5% CO2
incubator in Dulbecco’s modified Eagle’s medium (DMEM; Hyclone)
supplemented with glutamine (Gibco), 10% fetal bovine serum (FBS;
Atlanta Biologicals Premium Select), and 1% sodium pyruvate
(Gibco). Cells were routinely tested and found to be free of
mycoplasma contamination using Lonza MycoAlert Assay.
Cytotoxicity Studies. The cytotoxicity of NRH and its derivatives
was determined by CellTiter-Fluor (Promega), which measures cell
viability independent of metabolic markers related to NAD(P)(H).
HEK293T cells were seeded at a density of 5000 cells/well in a 96-
well clear bottomed black plate coated with poly-L-lysine (Corning).
HepG3 cell lines were seeded at a density of 15 000 cells/well in an
uncoated 96-well clear bottomed black plate (Greiner Bio). Cell
plating density was optimized to ensure ∼75% confluency at the end
of the assay. The following day, 100 mM stock solutions of 1,4-NRH,
1,2-NRH, and 1,6-NRH were prepared in a phosphate buffered saline
solution without calcium or magnesium (PBS, VWR). Cells were
exposed to 100 μM of each compound in the medium for 6 h. After 6
h, supplements were washed once in PBS, and fresh medium was
replaced. The cells were placed back at 37 °C in a 5% CO2 incubator
and allowed to grow for another 66 h (total 72 h). At the end of 72 h,
100 μL of CellTiter-Fluor reagent was added to all wells and
incubated for at least 30 min at 37 °C. Fluorescence intensity was
measured using a Tecan Infinite M1000 Pro plate reader (380 nm Ex/
505 nm Em). The fluorescent signal is then expressed as a percentage
relative to the control to reflect cell survival. Values are reported as
the mean percentage survival standard error of the mean (SEM) of
three biological replicates.
Recombinant Human NQO2 Enzyme Activity. Recombinant
human NQO2 was obtained from Sigma and diluted in 50 mM
phosphate buffer. All one-dimensional proton NMR spectra were
obtained at 300 K on a Bruker Ascend 400 MHz ultrashielded
spectrometer (Bruker Biospin) operating at 400.13 MHz for protons
and used to determine enzyme activity. TopSpin 3.2 (Bruker BioSpin)
was used for all NMR spectral acquisition (ns = 128) and
preprocessing, and the automation of sample submission was
performed using ICON-NMR (Bruker BioSpin). All samples were
automatically shimmed, and their acquisition time was 10 min and 8 s.
All experiments were performed at 25 °C. The 1,2-NRH, 1,4-NRH,
and 1,6-NRH used were synthesized according to the procedure
described in the experimental supplementary file. The rates of the
NQO2 enzyme were determined by NMR spectroscopy by recording
the rate of oxidation of 1,2-NRH, 1,4-NRH, and 1,6-NRH to NR at t
= 0, 6, and 24 h (ns = 128) at 25 °C in the NMR tube, made up of
borosilicate glass (7 in. × 5 mm) containing a final volume of 5.10
mL: 450 μL of phosphate buffer (50.0 mM, pH 7.1), 10 μL of
recombinant NQO2 (1 mg dissolved in 500 μL HEPES buffer), 50.0
μL of NRH (10.0 mM in D2O). All the experiments were performed
METHODS
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Full details of the synthetic and analytical experiments reported in this
characterization spectra of the reported molecules can be also found
Stability of NRH in Water and in Phosphate Buffer. Figure 3:
50 mg of 1,4-NRH was dissolved in 2.5 mL of sodium phosphate
buffer (50 mM, pH = 6.8). A total of 450 μL of the 1,4-NRH + buffer
solution was transferred to an NMR tube. A total of 50 μL of D2O was
added to the NMR tube to yield a total volume of 500 μL. The NMR
tube was vortexed to achieve a homogeneous solution and then placed
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in a 37 °C hot water bath for 1, 3, 12, and 24 h, at which time a H
NMR spectrum was taken.
Figure 4, Panel A: 30 mg of 1,4-NRH was dissolved in 1.5 mL of
deionized degassed water (pH= 7.3). A total of 450 μL of the 1,4-
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ACS Chem. Biol. 2021, 16, 604−614