SelectiVe Myocardial LTCC Blockers
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FLAP is a recently developed algorithm suitable for describing
proteins and ligands based on a common reference framework.
Given the 3D structure of a molecule, with the GRID force-field,6
the interaction energy between the molecule and a probe are
calculated at different points in space. As a result, one has the so-
called molecular interaction fields (MIF): the hydrophobic and
hydrogen bonding interactions of the molecule with a virtual
receptor are schematized by the probes and encoded into energy
values assigned to the nodes of a grid built around each molecule.
MIF are of central importance in the execution of the FLAP
algorithm because, given two molecules, their MIF are used by
FLAP to align one over the other. The first step of the FLAP
procedure is the creation of a database: all the molecules imported
will be referred to as ligand molecules. The ligand molecules are
subjected to a fast conformational analysis, a reasonable number
of conformations are generated, and each conformer is individually
treated (in this application, up to 100 conformations were generated
by FLAP). Some representative fields are extracted from the MIFs
of the individual elements entered and stored in the database. Then,
a molecular template is imported, the corresponding MIF are
calculated with the program GRID, and again some representative
fields are selected from the MIFs. All the heavy atoms of the
molecule are classified as hydrophobic or hydrogen bonding
hotspots and combined in quadruplets. A mathematical model is
then created, containing all the distances between all the possible
combinations of four hotspots of the template molecule. This
information is stored in a “virtual” bit-string, making future
computations much easier and quicker to complete and compare.
The next step in the FLAP process would be finding the matches
of the four hotspots of the individual ligands to those of the
template. When four hotspots of the ligand molecule are found to
fit over four hotspots of the template framework, a potentially
favorable superposition has been detected. Of course, the process
is iterative, and it will continue until all the template quadruplets
are combined in all possible ways with all ligand quadruplets. Each
time, a score associated to the two molecules and their common
quadruplet of hotspots quantifies the overlap of the two MIFs. At
the end of the process, only the best superposition of each ligand
to each template is memorized. A conformational sampling
guaranteed an adequate treatment of molecular flexibility. For 1,
the conformational analysis was carried out using 10 different
conformations and repeating for each conformation the entire
procedure described. For details, see also the Supporting Informa-
tion.
(16) Solomons, T. W. G.; Fryhle, C. B. Organic Chemistry; J. Wiley &
Sons: New York, 2007; Chapter 22.
(17) Anslyn, E. V.; Dougherty, D. A. Modern Physical Organic Chemistry;
University Science Books: Sausalito, CA, 2004; p 545.
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the Thiol Group; Patai, S., Ed.; J. Wiley & Sons: New York, 1974;
part 1, Chapter 8.
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University Science Books: Sausalito, CA, 2004; pp 637-638.
(20) Terrier, F. Nucleophilic Aromatic Displacement: The Influence of the
Nitro Group; Feuer H., Ed.; VCH:: New York, 1991; pp 29-36.
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Group; Patai, S., Ed.; J. Wiley & Sons: New York, 1974; part 2,
Chapter 16.
(22) (a) Cornils, B.; Herrmann, W. A.; Schlo¨gl, R.; Wong, C.-H.; Catalysis
from A to ZsA Concise Encyclopedia; Wiley VCH: Weinheim, 2003;
p 824; (b) March’s AdVanced Organic Chemistry: Reactions, Mech-
anisms and Structure; Smith, M. B., March, J., Eds.; Wiley VCH:
Weinheim, 2007; Chapter 10.
(23) Oba, T.; Aoki, T.; Koshita, M.; Nihonyanagi, K.; Yamaguchi, M.
Muscle Contraction and Inward Current Induced by Silver and Effect
of Ca2+ Channel Blockers. Am. J. Physiol. 1993, C852–C856.
(24) Tupling, R.; Green, H. Silver Ions Induce Ca2+ Release from the SR
In Vitro by Acting on the Ca2+ Release Channel and the Ca2+ Pump.
J. Appl. Physiol. 2002, 4, 1603–1610.
Acknowledgment. Supported by grants from MUR: PRIN-
2005, (2005034305_1) “Chemistry, reactivity and biological
activity of nitrogen- and/or oxygen- and/or sulphur-containing
heterocycles” and from the University of Bologna. The technical
support of Dr. Gaetano Corda for binding experiments is
gratefully acknowledged.
Supporting Information Available: Physical properties and
spectroscopic data for the compounds 7a,b-18a,b, functional
assays, receptor binding studies, electrophysiological experiments,
and computational methods. This material is available free of charge
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