5-HT4 Receptor Agonists
Journal of Medicinal Chemistry, 2009, Vol. 52, No. 8 2223
30 min. Each reaction was diluted with a 1/1 mixture of THF/H2O
(2 mL), agitated for 1 min, and then the resins were filtered, washed
successively with a 1/1 mixture of THF/H2O (2 × 3 mL for 3 min),
DMF (4 × 3 mL for 3 min), and CH2Cl2 (2 × 3 mL for 3 min) and
air-dried for 10 min.
tography on silica. Eluting first with (CH2Cl2/MeOH 80:20) and
second with (CH2Cl2/toluene/MeOH 50:30:20) gave 65 mg (91%)
of 9{a;y} as an orange foam. Rf (CH2Cl2/toluene/MeOH 50:30:
1
20) 0.57. H NMR (400 MHz, CD3OD) δ 8.55 (dd, 1H, J ) 8.3
Hz and J ) 1.2 Hz), 8.46 (dd, 1H, J ) 7.3 Hz and J ) 1.2 Hz),
8.33 (d, 1H, J ) 8.3 Hz), 7.73 (s, 1H), 7.63 (dd, 1H, J ) 8.3 Hz
and J ) 7.4 Hz), 6.98 (d, 1H, J ) 8.3 Hz), 6.43 (s, 1H), 4.37 (t,
2H, J ) 5.4), 4.10 (t, 2H, J ) 7.3 Hz), 3.78 (s, 3H), 3.67 (m, 1H),
3.06 (m, 2H), 2.88 (t, 2H, J ) 5.4 Hz), 2.39 (m, 2H), 2.18, (t, 2H,
J ) 7.2 Hz), 1.83 (m, 2H), 1.65 (m, 4H), 1.54 (m, 2H), 1.39 (m,
2H). 13C NMR (100 MHz, CD3OD) δ 175.5, 166.4, 166.2, 165.6,
164.2, 162.0, 151.6, 135.3, 134.2, 132.6, 131.3, 130.8, 126.0, 124.7,
123.1, 113.0, 111.3, 110.3, 108.2, 98.7, 62.2, 57.6, 56.2, 53.6, 49.4,
49.2, 49.0, 48.8, 48.6, 48.4, 47.1, 40.8, 36.8, 31.9, 28.8, 27.5, 26.7.
ESI m/z 637 (M + H+), 659 (M + Na); mp 150 °C; Anal.
(C33H38ClN5O5 ·3H2O), C, H, N.
N-Alkylation Step (8{a-x} and 8{b-x}). Resins 7{a-x} and
7{b-x} were swelled in a 9/1 mixture of DMF/DIEA (3 mL for 3
min), DMF (2 × 3 mL for 3 min), and 2.33 mL of a stock solution
containing C (2.73 g, 8.84 mmol) and DIEA (2.16 mL, 12.38 mmol)
in 57 mL of DMF were added to each resin (the final concentration
of the bromoester C is 150 mM). The mixtures were agitated at 40
°C for 20 h, cooled to room temperature, filtered, and washed three
times sequentially with DMF, MeOH, and CH2Cl2 (3 mL of DMF
for 2 min, followed by 3 mL of MeOH for 2 min, followed by 3
mL of CH2Cl2 for 3 min) and then with DMF (3 × 3 mL for 2
min). Then, 2.33 mL of the C/DIEA stock solution were added to
each resin. Mixtures were agitated at 40 °C for 20 h, cooled to
room temperature, filtered, and washed three times sequentially with
DMF, MeOH, and CH2Cl2 (3 mL of DMF for 2 min, followed by
3 mL of MeOH for 2 min, followed by 3 mL of CH2Cl2 for 3
min), three times sequentially with CH2Cl2 and MeOH (3 mL of
CH2Cl2 for 3 min, followed 3 mL of MeOH for 3 min) and finally
with CH2Cl2 (3 × 3 mL for 2 min).
Bivalent Ligand 13. A solution of 1228 (301 mg, 0.25 mmol)
in HCl/MeOH 4 N (15 mL) was stirred at room temperature for 30
min, and the solvent was removed to give 285 mg (99%) of 11 as
1
a beige hygroscopic foam. H NMR (200 MHz, CD3OD) δ 7.71
(s, 2H), 7.06 (s, 4H), 6.52 (s, 2H), 4.51 (bs, 4H), 3.76-3.64 (m,
8H), 3.59-3.32 (m, 8H) 2.92 (m, 8H), 2.57 (m, 4H), 2.28 (m, 4H),
2.15-1.65 (m, 20H). 13C NMR (50 MHz, CD3OD) δ 174.1, 165.7,
161.7, 149.5, 139.7, 134.4, 129.6, 111.8, 109.4, 98.4, 59.9, 56.9,
56.7, 53.6, 45.6, 33.8, 33.1, 30.1, 29.0, 27.6, 23.1. m/z ) 984 [M
+ H]+. Anal. (C50H72Cl2N8O8 ·4HCl + 9.5H2O), C, H, N.
Cleavage (9{a-x} and 9{b-x}). Resins 8{a-x} and 8{b-x}
were swelled in CH2Cl2 (2 × 3 mL for 3 min) and cleaved with a
1/4 mixture of TFA/CH2Cl2 (2 mL) for 2 h at 25 °C. Resins were
filtered, and filtrates were concentrated.
Bivalent Ligand 14. Compound 13 (200 mg, 0.18 mmol, 1
equiv) was treated with a saturated aqueous solution of Na2CO3 (5
mL), and the aqueous phase was extracted twice with CH2Cl2 (1
× 15 mL and 2 × 10 mL). The two organic phases were pooled,
dried (Na2SO4), filtered, and concentrated. The resulting foam was
dissolved in absolute EtOH (10 mL) and treated with a solution of
fumaric acid (82 mg, 0.71 mmol, 4 equiv) in absolute EtOH (10
mL). The solution was stirred 10 min at room temperature, and
the solvent was removed. The residue was solubilized in hot EtOH,
and a resin was formed upon cooling. The supernatant was removed,
and the procedure was repeated. The resin was finally taken in hot
EtOH, concentrated, and dried to give 187 mg (73%) of 14 a white
Purification by Solid-Phase Extraction (SPE). SPE cartridges
(Supelco, DSC-SCX, 1 g/6 mL) were conditioned in MeOH (2 ×
3 mL) and charged with the crude products dissolved in MeOH (1
mL). Columns were washed with MeOH (4 × 4 mL), and the final
products were eluted with a solution of NH4OH 2 M in MeOH (2
× 3 mL). Filtrates were concentrated to give amides 9.
Analytical Control of Library 9. Amides 9 were dissolved in
MeOH (1.50 mL, HPLC grade), and 100 µL of this solution were
diluted with 900 µL of H2O milliQ + 0.025% TFA. The solutions
were analyzed by HPLC using the standard conditions.
A selection of compounds (9{a;a}, 9{a;c}, 9{a;e}, 9{a;h},
9{a;i}, 9{a;o}, 9{a;q}, 9{a;r}, 9{a;s}, 9{a;v}, 9{b;a}, 9{b;c},
9{b;e}, 9{b;g}, 9{b;i}, 9{b;j}, 9{b;l}, 9{b;p}, 9{b;q}, 9{b;r}, and
9{b;w}) was analyzed by 1H NMR (and 13C NMR for 9{a;g} and
9{b;w}). Elemental analyses were carried out on pure samples of
9{a;q} and 9{b;w}. See Supporting Information for full details.
2-[4-({6-[6-Nitro-1,3-dioxo-1H-benzo[de]isoquinolin-2(3H)-
yl]hexanoyl}amino)piperidino]ethyl 4-Amino-5-chloro-2-meth-
oxybenzoate 11. To a solution of 4-nitro-1,8-naphthalimido-N-
caproic acid27 (500 mg, 1.4 mmol, 1 equiv) in dry DMF (40 mL)
and cooled at 0 °C were added 1-hydroxbenzotriazole hydrate
(HOBT; 586 mg, 4.3 mmol, 3.1 equiv), 1-(3-dimethylaminopropyl)-
3-ethylcarbodiimide hydrochloride (EDC; 0.665 g, 3.4 mmol, 2.5
equiv), and triethylamine (641 mg, 6.3 mmol, 4.5 equiv). The
reaction mixture was stirred at this temperature for 5-10 min, and
then 2-(4-aminopiperidin-1-yl)ethyl 4 amino-5-chloro-2-methoxy-
benzoate hydrochloride 1026 (562 mg, 1.4 mol, 1 equiv) was added.
The reaction was then stirred at room temperature for 20 h before
it was evaporated to dryness. The residue was purified twice by
chromatography on silica. Elution first with (CH2Cl2/MeOH 90:
10) and then with (CH2Cl2/iPrOH 60:40) gave 80 mg (8.5%) of 11
(C33H36ClN5O8) as an ochre foam. Rf (CH2Cl2/iPrOH 60:40) 0.36.
1H NMR (200 MHz) δ 8.69 (m,1H), 8.63 (m,1H), 8.50 (m, 1H),
8.35 (m, 1H), 7.94 (s, 1H), 7.76 (m, 1H), 6.23 (s, 1H), 5.94 (bd,
1H), 4.46 (m, 4H), 4.16 (m, 2H), 3.89 (m, 1H), 3.80 (s, 3H), 3.29
(m, 2H), 3.02 (t, J ) 5.4 Hz, 2H), 2.55 (m, 2H), 2.21 (t, J ) 7.3
Hz, 2H), 1.95 (m, 2H), 1.76 (m, 6H), 1.43 (m, 2H).
1
foam. H NMR (200 MHz, CD3OD) δ 7.80 (s, 2H), 7.18 (s, 4H),
6.73 (s, 8H), 6.49 (s, 2H), 4.61 (bs, 4H), 4.08-3.77 (m, 8H), 3.66
(m, 4H), 3.51 (m, 4H), 3.30-2.92 (m, 8H), 2.71 (m, 4H), 2.40 (m,
4H), 2.25-1.77 (m, 20H). 13C NMR (50 MHz, CD3OD) δ 174.2,
170.8, 165.9, 162.0, 151.9, 139.7, 136.2, 134.4, 129.6, 110.5, 107.6,
98.7, 59.8, 56.6, 56.4, 52.8, 45.4, 33.8, 33.1, 29.7, 29.0, 27.2, 23.5.
Anal. (C50H72Cl2N8O8 ·4C4H4O4 + 4.5 H2O), C, H, N.
4-(N-tert-Butoxycarbonyl(3-phenylprop-2-ynyl)amino)butano-
ic Acid 16. To a stirred solution of iodobenzene (612 mg, 3.00
mmol, 1.00 equiv), PdCl2(PPh3)2 (106 mg, 0.15 mmol, 0.05 equiv),
and CuI (56 mg, 0.30 mmol, 0.10 equiv) in a 1/1 mixture of freshly
distilled NEt3 and anhydrous DMF (20 mL) at room temperature
was added dropwise a solution of 1528 (763 mg, 3.15 mmol, 1.05
equiv) in anhydrous DMF (10 mL). The solution was stirred at 80
°C for 3.5 h and cooled to room temperature. After removal of the
solvents, the crude mixture was purified by chromatography on
silica gel, using AcOEt/cHex (2/8) + 0.5% AcOH followed by
AcOEt/cHex (3/7) + 0.5% AcOH, to give 780 mg (82%)
1
(C18H23NO4) of 16 as a yellow oil. H NMR (300 MHz) δ 7.41
(dd, J ) 6.7 and 3.0 Hz, 2H), 7.35-7.27 (m, 3H), 4.26 (s, 2H),
3.46 (t, J ) 7.2 Hz, 2H), 2.42 (t, J ) 7.2 Hz, 2H), 1.97 (m, J )
7.2 Hz, 2H), 1.49 (s, 9H). 13C NMR (75 MHz) δ 176.3, 155.5,
131.8, 128.4, 123.0, 85.1, 80.2, 45.9, 31.3, 28.5, 27.1, 23.4.
4-(N-tert-Butoxycarbonyl(3-phenylpropyl)amino)butanoic Acid
17. To a stirred solution of 16 (500 mg, 1.58 mmol) in MeOH (15
mL) at room temperature was added Pd/C 10% (47 mg). The
mixture was hydrogenated at atmospheric pressure overnight and
filtered through a pad of celite. After evaporation of the solvent, a
purification by chromatography on silica gel, using CH2Cl2 + 0.5%
AcOH followed by CH2Cl2/MeOH (95/5) + 0.5% AcOH, gave 478
mg (94%) of 17 (C18H27NO4) as a colorless oil. 1H NMR (300 MHz)
δ 10.40 (bs, 1H), 7.52 (m, 5H), 3.26 (bs, 4H), 2.62 (t, J ) 7.7 Hz,
2H), 2.37 (t, J ) 7.2 Hz, 2H), 1.88 (m, 4H), 1.46 (s, 9H). 13C
2-[4-({6-[6-Amino-1,3-dioxo-1H-benzo[de]isoquinolin-2(3H)-
yl]hexanoyl}amino)piperidino]ethyl 4-Amino-5-chloro-2-meth-
oxybenzoate 9{a;y}. To a solution of 11 (75 mg, 0.113 mmol) in
methanol (6 mL) was added Raney nickel. The reaction mixture
was stirred under atmospheric pressure at room temperature for
14 h and filtered through celite. The solvent was removed under
reduced pressure, and the residue was purified twice by chroma-