LETTER
Synthesis of Unnatural C-2 Amino Acid Nucleosides
455
(16) (a) Kaneko, M. J. Synth. Org. Chem., Jpn. 1991, 49, 989.
(b) Boehme, R. E.; Borthwick, A. D.; Wyatt, P. G. Annu.
Rep. Med. Chem. 1994, 29, 145. (c) Cabib, E. Antimicrob.
Agents Chemother. 1991, 35, 170. (d) Gaughran, J. P.; Lai,
M. H.; Kirsch, D. R.; Silverman, S. J. J. Bacteriol. 1994,
176, 5857. (e) Aoki, Y.; Kondoh, M.; Nakamura, M.; Fujii,
T.; Yamazaki, T.; Shimada, H.; Arisawa, M. J. Antibiot.
1994, 47, 909; and references therein.
(17) (a) Barrett, A. G. M.; Lebold, S. A. J. Org. Chem. 1990, 55,
3853. (b) Barrett, A. G. M.; Lebold, S. A. J. Org. Chem.
1990, 55, 5818. (c) Auberson, Y.; Vogel, P. Tetrahedron
1990, 46, 7019. (d) Barrett, A. G.; Lebold, S. A. J. Org.
Chem. 1991, 56, 4875. (e) Koizumi, K.; Kitada, Y.;
Yokoyama, C.; Ogawa, S. J. Chem. Soc., Chem. Commun.
1994, 111. (f) Dondoni, A.; Junquera, F.; Merchan, F. L.;
Merino, P.; Tejero, T. Tetrahedron Lett. 1994, 35, 9439.
(g) Evina, C. M.; Guillerm, G. Tetrahedron Lett. 1996, 37,
163. (h) Trost, B. M.; Shi, Z. J. Am. Chem. Soc. 1996, 118,
3037. (i) Knapp, S. Chem. Rev. 1995, 95, 1859.
Compound 5: mp 182 °C; Rf (EtOAc–PE, 2:3) 0.3; [a]D
+42.22 (c = 1.8, CHCl3). IR (neat): 2114, 1744, 1713, 1693,
1496, 1265, 737, 699 cm–1. 1H NMR (400 MHz, CDCl3):
d = 8.45 (s, 1 H), 7.22–7.37 (m, 15 H), 6.99 (s, 1 H), 5.77 (d,
J = 7.1 Hz, 1 H), 5.00 (d, J = 11.6 Hz, 1 H), 4.32 (d, J = 10.4
Hz, 1 H), 4.66 (dd, J = 4.8 Hz, J2 = 17.2 Hz, 2 H), 4.57 (d,
J = 12.4 Hz, 1 H), 4.49 (d, J = 12.4 Hz, 1 H), 4.39 (d, J = 1.8
Hz, 1 H), 3.83–3.72 (m, 3 H), 3.64–3.66 (m, 1 H), 3.55 (m,
4 H), 2.51 (br s, 1 H), 1.91 (s, 3 H). 13C NMR (100 MHz,
CDCl3): d = 169.4, 163.0, 149.4, 137.6, 137.5, 137.4, 128.6,
128.5, 128.4, 128.3, 128.1, 127.9, 110.8, 79.0, 78.4, 77.3,
75.2, 74.8, 73.4, 68.0, 57.9, 52.7, 47.3, 22.5. HRMS: m/z [M
+ Na] calcd for C35H37N5O8: 678.2540; found: 678.2554.
General Procedure for the Reduction of Azides Using
Zn; Synthesis of Amino Acid Nucleoside 6: To a stirred
solution of azide 5 (0.105 g, 0.16 mmol) in AcOH–THF (1:1,
5 mL) was added zinc (0.0009 g, 10 mmol%) and the
reaction was stirred for 3 h at r.t. (25 °C). After the
disappearance of the starting material (by TLC), Zn was
removed by filtration and the filtrate was diluted with EtOAc
(15 mL). The organic layer was thoroughly washed with
NaHCO3 solution. It was separated and dried over anhyd
Na2SO4. The filtrate was concentrated and the crude product
was purified by flash chromatography on silica gel (230–400
mesh) using 20% MeOH–CHCl3 to obtain the corresponding
C-2 amino acid nucleoside 6 as a colorless gummy solid
(0.080 g, 80%).
(18) Kim, C.; Hoang, R.; Theodorakis, A. Org. Lett. 1999, 1,
1295.
(19) (a) Bhaket, P.; Stuaffer, C. S.; Dutta, A. J. Org. Chem. 2004,
69, 8594. (b) Bhaket, P.; Stuaffer, C. S.; Fothergill, A. W.;
Rinaldi, M. G.; Dutta, A. J. Org. Chem. 2007, 72, 9991.
(20) Stuaffer, C. S.; Dutta, A. J. Org. Chem. 2008, 73, 4166.
(21) General Procedure for the NIS-Mediated Ring Opening
of Cyclopropyl Carboxylates; Synthesis of Iodide 4: To a
solution of cyclopropyl carboxylate 2 (0.488 g, 1 mmol) in
CH2Cl2 (10 mL), freshly prepared TMS-activated thymine 3
(0.675 g, 2.5 mmol) and NIS (0.562 g, 2.5 mmol) were added
under an argon atmosphere at r.t. (25 °C). After 48 h the
reaction mixture was diluted with CHCl3 (10 mL) and then
neutralized with dilute Na2S2O3 solution. Insoluble material
was removed by filtration. The organic layer was separated
and dried over anhyd Na2SO4.The filtrate was concentrated
and the crude product was purified by flash chromatography
on silica gel (230–400 mesh) using 40% EtOAc–PE, which
gave the corresponding iodide 4 as a gummy solid (0.606 g,
82%).
Compound 6: Rf (MeOH–CHCl3, 4:1) 0.35; [a]D +12 (c = 2,
CHCl3). IR neat): 3584, 3064, 3031, 2953, 2919, 1739, 1733,
1694, 1455, 1368, 1267, 1155, 1111, 736, 698, 666 cm–1. 1H
NMR (400 MHz, CDCl3): d = 8.92 (br s, 1 H), 7.21–7.33 (m,
15 H), 7.06 (s, 1 H), 5.77 (d, J = 10.4 Hz, 1 H), 4.99 (d, J =
11.6 Hz, 1 H), 4.86 (d, J = 11.2 Hz, 1 H), 4.73 (d, J = 11.6
Hz, 1 H), 4.65 (d, J = 11.2 Hz, 1 H), 4.50–4.60 (m, 3 H),
4.10–4.04 (m, 1 H), 3.61–3.80 (m, 6 H), 3.46 (s, 3 H), 2.41
(m, 1 H), 1.93 (s, 3 H). 13C NMR (100 MHz, CDCl3): d =
176.0, 163.8, 150.7, 138.5, 138.3, 136.0, 129.0, 128.9,
128.4, 128.3, 128.2, 111.6, 80.0, 79.5, 75.7, 75.3, 73.8, 68.8,
52.5, 51.0, 49.9, 30.8, 12.9. HRMS: m/z [M + Na] calcd for
C35H39N3O8: 652.2635; found: 652.2662.
General Procedure for the Reduction of Azide 10 Using
Pd/C: A suspension of 10% Pd/C (0.040 g) and azide 10
(0.040 g, 0.06 mmol) in MeOH (2 mL) under hydrogen
atmosphere was stirred for 12 h at ambient temperature (25
°C). The catalyst was filtered and washed with MeOH (20
mL). The filtrate was concentrated and the crude product
was purified by flash column chromatography (10% CHCl3–
MeOH) to get the corresponding amino triol 27 as a gummy
solid (0.017 g, 82%).
Compound 27: Rf (MeOH–CHCl3, 1:9) 0.2; [a]D +6.5 (c = 2,
DMF). IR (neat): 3417, 1659, 1651, 1644, 1049, 1026, 1004,
826, 764 cm–1. 1H NMR (400 MHz, DMSO): d = 10.32 (s, 1
H), 7.50 (d, J = 8.1 Hz, 1 H), 5.60 (d, J = 8.0 Hz, 1 H), 5.56
(d, J = 10.0 Hz, 1 H), 4.45 (t, J = 6.0 Hz, 1 H), 3.73 (d, J =
12.0 Hz, 1 H), 3.53–3.66 (m, 5 H), 3.20–3.35 (m, 2 H), 1.89–
2.13 (m, 5 H). 13C NMR (100 MHz, DMSO): d = 177.2,
163.8, 151.5, 141.9, 103.0, 81.1, 79.9, 72.0, 61.9, 52.6, 51.1,
50.1, 21.6. HRMS: m/z [M + Na] calcd for C13H19N3O8:
368.1070; found: 368.1065.
Compound 4: Rf (EtOAc–PE, 2:3) 0.35; [a]D +31.0 (c = 2,
CHCl3). IR (neat): 3214, 3064, 3032, 1721, 1714, 1694,
1454, 1368, 1267, 1027, 736, 698 cm–1. 1H NMR (400 MHz,
CDCl3): d = 9.05 (s, 1 H), 7.10–7.34 (m, 18 H), 5.97 (d, J =
9.9 Hz, 1 H), 5.00 (d, AB type, J = 10.5 Hz, 1 H), 4.74 (d,
AB type, J = 10.5, 1 H), 4.31 (d, AB type, J = 10.2 Hz, 1 H),
4.46–4.63 (m, 3 H), 3.98 (q, J = 7.8 Hz, 2 H), 3.81 (dd, J1 =
3.6 Hz, J2 = 11.1 Hz, 1 H), 3.62–3.71 (m, 2 H), 3.84 (s, 3 H),
1.94 (s, 3 H). 13C NMR (100 MHz, CDCl3): d = 167.2, 163.1,
150.2, 137.9, 137.7, 137.4, 134.9, 128.4, 127.7, 127.5,
112.3, 82.0, 78.9, 77.4, 74.7, 74.6, 73.4, 68.3, 53.6, 48.8,
23.3, 12.5. HRMS: m/z [M + Na] calcd for C35H37IN2O8:
763.1492; found: 763.1559.
General Procedure for the Preparation of Azides;
Synthesis of Azide 5: To a stirred solution of iodide 4 (0.236
g, 0.31 mmol) in anhyd DMF (2 mL) was added sodium
azide (0.040 g, 0.62 mmol) and the reaction was stirred for
24 h at r.t. (25 °C). Most of the DMF was removed under
vacuum followed by dilution with CHCl3 (10 mL), which
was washed with H2O. The organic layer was separated and
dried over anhyd Na2SO4. The filtrate was concentrated and
the crude product was purified by flash chromatography on
silica gel (230–400 mesh) using 40% EtOAc–PE to obtain
the corresponding azide 5 as a pale yellow solid (0.200 g,
96%).
(22) For reviews, see: (a) Reissig, H. U. Top. Curr. Chem. 1988,
144, 73. (b) Reissig, H. U.; Zimmer, R. Chem. Rev. 2003,
103, 1151. (c) Yu, M.; Pagenkopf, B. L. Tetrahedron 2005,
61, 321.
Synlett 2009, No. 3, 451–455 © Thieme Stuttgart · New York