H.-J. Breyholz et al.
MED
step without further purification. The product contained traces of
the dialkylated by-product (as seen by MS); yield=2.48 g
(1ꢃ), dried (Na2SO4), filtered and concentrated to give an orange
oily residue. The residue was purified by silica gel column chroma-
tography (EtOAc/MeOH, 19:1) to give pure 27; yield=36%; mp:
1508C; 1H NMR (300 MHz, [D6]DMSO): d=11.59 (br s, 2H), 7.44–
6.91 (m, 9H, HAryl), 3.68–2.32 ppm (m, 24H, CH2); 13C NMR
(75.5 MHz, [D6]DMSO): d=169.22, 157.22, 155.74, 149.36, 130.13,
129.62, 129.56, 124.00, 119.22, 118.00, 73.86, 70.30, 69.70, 69.57,
69.52, 68.22, 68.10, 57.05, 53.65, 47.23, 30.71 ppm; HRMS-ESI: m/z
[M+H]+ calcd for C28H35BrN4O7: 619.1764, found: 619.1762; Anal.
calcd for C28H35BrN4O7: C 54.29, H 5.69, N 9.04, found: C 55.59, H
5.78, N 8.99.
2
(9.38 mmol, 94%); 1H NMR (300 MHz, CDCl3): d=4.55 (dt, JH,F
=
3
47.6 Hz, J=8.5 Hz, 2H, O-CH2CH2F), 3.81–2.45 ppm (m, 22H, CH2);
13C NMR (75.5 MHz, CDCl3): d=83.11 (j JC,F j=166.0 Hz), 70.84,
1
2
70.66, 70.56, 70.29, 69.70 (j JC,F j=20.3 Hz), 68.88, 58.47, 55.08,
46.78 ppm; 19F NMR (282 MHz, CDCl3): d=ꢀ221.55; MS (MALDI-
TOF): m/z 265 [M+H]+.
4-(3,6,9,12-Tetraoxapentadec-14-ynyl)piperazin-1-ium 2,2,2-tri-
fluoroacetate (21): N-Boc-protected intermediate: yield=70%,
yellow oil; 1H NMR (300 MHz, CDCl3): d=4.20 (d, 2H, 4J=2.5 Hz,
CH2CꢁCH), 3.70–2.44 (m, 25H, CH2, CH), 1.46 ppm (s, 9H, CH3);
13C NMR (75.5 MHz, CDCl3): d=154.70, 79.64, 79.55, 74.57, 70.62,
70.59, 70.57, 70.41, 70.38, 69.08, 68.84, 58.39, 57.82, 53.36, 49.03,
28.42 ppm; HRMS-ESI: m/z [M+Na]+ calcd for C20H36N2O6Na:
423.2655, found: 423.2466; Anal. calcd for C20H36N2O6: C 59.98, H
9.06, N 6.99, found: C 59.06, H 9.07, N 7.02. TFA salt: yield=86%,
light yellow oil; 1H NMR (300 MHz, CDCl3): d=4.17 (d, 2H, 4J=
5-[4-(2-(2-(2-(2-Hydroxyethoxy)ethoxy)ethoxy)ethyl)piperazin-1-
yl]-5-(4-phenoxyphenyl)pyrimidine-2,4,6-trione (30): Compound
14 was used to prepare this compound. For work up, the solvent
was evaporated and the residue purified by silica gel column chro-
matography (EtOAc/MeOH, 2:1) to give a highly viscous oil; yield=
1
55%; H NMR (300 MHz, [D6]DMSO): d=11.53 (br s, 2H), 7.38–6.93
(m, 9H, HAryl), 3.51–2.22 ppm (m, 24H, CH2); 13C NMR (75.5 MHz,
[D6]DMSO): d=169.98, 157.29, 155.75, 149.46, 130.52, 130.13,
129.63, 123.99, 119.21, 118.00, 73.84, 72.27, 69.74, 69.69, 69.57,
68.11, 60.12, 57.08, 53.67, 47.25, 29.46 ppm; HRMS-ESI: m/z [M+
H]+ calcd for C28H37N4O8: 557.2606, found: 557.2599. The purity of
30 was determined by analytical HPLC to be 95%, tR =20.93ꢂ
0.73 min (n=5).
4
2.4 Hz, CH2CꢁCH), 3.82–3.34 (m, 24H, CH2, CH), 2.52 ppm (t, J=
2.4 Hz, 1H, CH); 13C NMR (75.5 MHz, CDCl3): d=79.37, 75.04, 70.26,
70.24, 70.20, 70.00, 69.95, 69.85, 69.83, 58.20, 56.56, 51.90,
48.86 ppm; HRMS-ESI: m/z [M]+ calcd for C15H29N2O4: 301.2122,
found 301.2134; Anal. calcd for C15H29N2O4·3TFA: C 39.38, H 4.56, N
4.37, found: C 39.47, H 5.04, N 4.58.
General procedure for the preparation of pyrimidine-2,4,6-tri-
ones 24 and 25–32: Compounds 24 and 25–32 were prepared ac-
cording to the previously described procedures.[26,29]
5-[4-(2-(2-(2-(2-Fluoroethoxy)ethoxy)ethoxy)ethyl)piperazin-1-
yl]-5-(4-phenoxyphenyl)pyrimidine-2,4,6-trione (31): Compound
18 was used to prepare this compound. For work up, the solvent
was evaporated and the residue purified by silica gel column chro-
matography (EtOAc/MeOH, 2:1) to give a highly viscous oil; yield=
5-(4-Phenoxyphenyl)-5-piperazinyl-pyrimidine-2,4,6-trione (25):
Piperazine (3) was used to prepare this compound. For work up,
the reaction mixture was taken up in EtOAc and water was added.
The colorless precipitate was collected by suction; yield=43%, col-
orless solid; mp: 275–2778C (decomp); 1H NMR (300 MHz,
[D6]DMSO): d=7.45–6.93 (m, 9H, HAryl), 2.68–2.19 ppm (m, 8H,
CH2); 13C NMR (75.5 MHz, [D6]DMSO): d=170.52, 157.10, 155.89,
150.30, 130.12, 129.81, 123.92, 119.87, 119.15, 117.93, 74.18, 48.69,
46.03 ppm; HRMS-ESI: m/z [M+H]+ calcd for C20H21N4O4: 381.1563,
found 381.1559; Anal. calcd for C20H20N4O4·0.5H2O: C 61.69, H 5.43,
N 14.38, found: C 61.74, H 5.12, N 14.29.
1
32%; H NMR (300 MHz, [D6]DMSO): d=11.53 (br s, 2H), 7.36–6.91
(m, 9H, HAryl), 4.52 (d, 2JH,F =48.5 Hz, 2H, O-CH2CH2F), 3.63–
2.19 ppm (m, 22H, CH2); 13C NMR (75.5 MHz, [D6]DMSO): d=169.86,
157.39, 155.65, 149.36, 130.15, 129.54, 126.94, 124.05, 119.21,
1
118.04, 83.00 (j JC,F j=165.4 Hz), 73.82, 72.27, 70.15, 69.73, 69.64
2
(j JC,F j=21.9 Hz), 69.46, 56.63, 53.36, 46.66, 30.11 ppm; HRMS-ESI:
m/z [M+H]+ calcd for C28H36FN4O7: 559.2563, found: 559.2557. The
purity of 31 was determined by analytical HPLC to be 91%, tR =
22.48ꢂ0.07 min (n=3).
5-[4-(3,6,9,12-Tetraoxapentadec-14-ynyl)piperazin-1-yl]-5-(4-phe-
noxyphenyl)pyrimidine-2,4,6-trione (32): Compound 21 was used
as the piperazine component to prepare this compound. For work
up, water was added to the reaction mixture, which was subse-
quently extracted with EtOAc (3ꢃ). The combined extracts were
washed with brine (1ꢃ), dried (Mg2SO4) and filtered. The solvent
was removed in vacuo and the residue purified by silica gel
column chromatography (EtOAc/MeOH, 19:1) to give pure 32;
yield=78%; mp: 155–1578C; 1H NMR (400 MHz, [D6]DMSO): d=
1.61 (br s, 2H), 7.42–6.99 (m, 9H, HAryl), 4.11 (s, 2H, CH2-CꢁCH),
3.53–2.48 (m, 25H, CH, CH2); 13C NMR (100 MHz, [D6]DMSO): d=
169.90, 157.33, 155.78, 149.35, 130.12, 129.64, 126.75, 124.00,
119.22, 118.02, 80.29, 77.02, 73.89, 69.97, 69.72, 69.69, 69.59, 69.45,
68.47, 68.11, 57.44, 57.07, 53.66, 47.25 ppm; HRMS-ESI: m/z [M+
H]+ calcd for C31H39N4O8: 595.2562, found: 595.2759; Anal. calcd
for C31H38N4O8: C 62.61, H 6.44, N 9.42, found: C 62.33, H 6.40, N
9.29.
5-[4-(2-Fluoroethyl)piperazin-1-yl]-5-(4-phenoxyphenyl)pyrimi-
dine-2,4,6-trione (26): Compound 6 was used to prepare this com-
pound. For work up, the reaction mixture was diluted with EtOAc
and aqueous citric acid (0.1 mmolmLꢀ1) was added. The aqueous
phase was extracted with EtOAc (2ꢃ) and the combined organic
phases were washed with water, dried (Na2SO4), filtered and con-
centrated. The residue was purified by silica gel column chroma-
tography (EtOAc/MeOH, 19:1) and the concentrated eluent was
subsequently stirred in diisopropylether/acetone (99:1 v/v) to give
pure 26; yield=45%; mp: 222–2248C (decomp); 1H NMR
(300 MHz, [D6]DMSO): d=11.46 (br s, 2H), 7.37–6.93 (m, 9H, HAryl),
4.43 (dt, 2JH,F =48.0 Hz, 3JH,H =9.6 Hz, 2H, N-CH2CH2F), 2.59–
2.38 ppm (m, 10H, CH2); 13C NMR (75.5 MHz, [D6]DMSO): d=169.92,
157.33, 155.74, 149.35, 130.13, 129.62, 129.56, 124.01, 119.23,
1
2
118.02, 81.65 (j JC,F j=164.8 Hz), 73.87, 57.39 (j JC,F j=19.7 Hz),
53.46, 47.23 ppm; HRMS-ESI: m/z [M+H]+ calcd for C22H24FN4O4:
427.1776, found: 427.1779. The purity of 26 was determined by an-
alytical HPLC to be >97%, tR =20.64ꢂ0.08 min (n=3).
General procedure for the preparation of triazoles 36–38:
Alkyne 32 (100 mg, 168 mmol) was dissolved in a mixture of tBuOH
(6 mL) and H2O (1.5 mL) under heating. The solution was cooled to
RT and mesylate 33 (50 mg, 168 mmol), tosylate 34 (90 mg,
168 mmol), or fluoro compound 35 (37 mg, 168 mmol), CuSO4·5H2O
(16.8 mg, 67.2 mmol, 40 mol% in case of 36 and 38 or 12.6 mg,
5-[4-(2-(2-(2-(2-Bromoethoxy)ethoxy)ethoxy)ethyl)piperazin-1-
yl]-5-(4-phenoxyphenyl)pyrimidine-2,4,6-trione (27): Compound
9 was used to prepare this compound. For work up, water was
added to the reaction mixture, which was subsequently extracted
with EtOAc (3ꢃ). The combined extracts were washed with brine
786
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ChemMedChem 2010, 5, 777 – 789