7464 Journal of Medicinal Chemistry, 2010, Vol. 53, No. 20
Lamblin et al.
significantly affected the distance between Lys248 and Glu420
that form a charge clamp for coactivator binding. For 1 and 4,
˚
this distance varied between 18 and 19.6 A during the course
of the simulation, while for 5, the distance increased substan-
˚
tially to 21.5 A at the end of the simulation. Taken together,
the MD and docking studies suggest that the relative rigidity
and propensity to avoid internal A-1,3 strain of LBD-bound 5
make it more difficult for H12 to be properly positioned
within the VDR to allow efficient coactivator binding, thus
leading to an inactive holo-VDR and explaning the antago-
nistic effect of 5 on 1 when present in concentrations high
enough to compete effectively for binding.
(2H, brs), 7.06 (1H, d, J = 7.6 Hz), 6.16 (1H, d, J = 11.2 Hz),
5.92 (1H, d, J = 14.8 Hz), 5.80 (1H, d, J = 11.2 Hz), 5.72 (1H, d,
J = 10.0 Hz), 4.10-4.02 (2H, m), 3.94 (1H, brs), 2.81 (1H, d,
J = 12.0 Hz), 2.55 (1H, d, J = 6.8 Hz), 2.40-2.31 (2H, m), 2.26
(1H, d, J = 12.8 Hz), 2.10 (1H, dd, J = 12.8, 8.0 Hz), 2.05-1.95
(2H, m), 1.87-1.30 (16H, m), 1.13 (1H, brs), 1.02 (3H, d, J = 6.4
Hz), 0.87 (9H, s), 0.57 (9H, s), 0.58 (3H, s), 0.05 (12H, s); 13C
NMR (75 MHz, CDCl3) δ 165.3, 148.5, 141.1, 140.6, 134.1,
129.6, 128.5, 127.2, 125.3, 124.8, 121.9, 119.8, 118.5, 117.6,
116.5, 68.3, 68.2, 56.6, 56.3, 46.2, 45.9, 43.9, 40.7, 37.1, 36.3,
28.9, 27.4, 26.11 (3C), 26.09 (3C), 23.6, 22.5, 20.1, 18.40, 18.37,
13.0, 12.7, -4.4, -4.5, -4.6, -4.7; IR (film) ν 3248 (br), 2952,
2856, 1613, 1530, 1456, 1253, 1086, 836, 775 cm-1. HRMS (ESI)
m/z calcd for [(M þ H)þ], 733.5160; found, 733.5152.
(R,2E,4E)-N-(2-Aminophenyl)-6-((1R,3aS,7aR,E)-4-(2-((3R,5R)-
3,5-dihydroxycyclohexylidene)ethylidene)-7a-methyloctahydro-
1H-inden-1-yl)-4-methylhepta-2,4-dienamide (5). TBAF (256 μL
of a 1 M solution in THF, 0.064 mmol, 4 equiv) and Et3N (7 μL,
0.048 mmol, 3 equiv) were added to a stirred solution of 8
(12 mg, 0.016 mmol, 1 equiv) in THF (1 mL) under argon, and
the mixture was stirred for 48 h. The solution was concentrated
in vacuo and loaded directly on to silica gel. Purification by silica
gel chromatography (20-60% acetone in hexanes) provided
5 as a clear oil in 62% yield (5 mg, 0.010 mmol). Further puri-
fication by reverse phase HPLC (C18, 70/30 MeCN/H2O)
yielded an analytically pure (>97%) sample which was used
for biological assays. Rf = 0.5 (60% acetone in hexanes);
1H NMR (400 MHz, CDCl3) δ 7.35 (1H, d, J = 15.2 Hz),
7.27-7.17 (1H, m), 7.15-6.97 (2H, m), 6.80 (1H, d, J = 8.0 Hz),
6.77 (1H, brs), 6.31 (1H, d, J = 11.2 Hz), 5.94 (1H, d, J = 14.8
Hz), 5.84 (1H, d, J = 11.2 Hz), 5.73 (1H, d, J = 10.6 Hz),
4.17-4.08 (1H, m), 4.08-3.99 (1H, m), 3.90 (2H, brs), 2.82 (1H,
d, J = 16.0 Hz), 2.72 (1H, dd, J = 12.8, 3.6 Hz), 2.62-2.51 (2H,
m), 2.48 (1H, d, J = 13.6 Hz), 2.27-2.14 (4H, m), 1.82 (3H, s),
1.92-1.31 (10H, m), 1.06 (3H, d, J = 6.4 Hz), 0.59 (3H, s); 13C
NMR (75 MHz, CDCl3) δ 165.2, 148.3, 142.9, 141.0, 131.6,
129.7, 127.3, 125.3, 124.0, 119.8, 118.5, 117.7, 115.7, 67.6, 67.4,
56.6, 56.3, 46.1, 44.9, 42.4, 40.6, 37.4, 36.2, 29.1, 27.3, 23.7, 22.5,
20.1, 13.0, 12.7; IR (film) ν 3351 (br), 2936, 2871, 1654, 1612,
1528, 1454, 1045, 908, 732 cm-1. HRMS (ESI) m/z calcd for
[(M þ H)þ], 505.3430; found, 505.3424.
Conclusion
We have identified an o-aminoanilide analogue of 1,25D
that is a potent antagonist of the VDR. The antagonistic
activity appears to arise because of a more rigid side chain,
which inhibits the alignment of H12 necessary for coactivator
binding to the VDR.
Experimental Section
((R,2E,4E)-6-((1R,3aS,7aR,E)-4-(2-((3R,5R)-3,5-Bis(tert-
butyldimethylsilyloxy)cyclohexylidene)ethylidene)-7a-methyl-
octahydro-1H-inden-1-yl)-4-methylhepta-2,4-dienoic Acid (7).
LiOH H2O (4.8 mg, 0.114 mmol, 3 equiv) was added to a
3
stirring solution of methyl-(2E,4E,6R)-6-((1R,3R,7E,17β)-1,3-
bis[tert-butyl(dimethyl)silyloxy]-9,10-secoestra-5,7-dien-17-yl)-
4-methylhepta-2,4-dienoate7 (25.5 mg, 0.038 mmol) in THF
(0.5 mL), MeOH (200 μL), and H2O (200 μL). The reaction
vessel was fitted with a reflux condenser, and the mixture
brought to reflux for 3 h via a heating mantle. The mixture
was cooled to room temperature and diluted with EtOAc
(5 mL), then quenched with a 1.0 M solution of HCl (5 mL).
The layers were separated, and the aqueous layer was further
extracted with EtOAc (2 ꢀ 5 mL). The organic layers were
combined and extracted with distilled H2O (5 mL) and brine
(5 mL), then dried (MgSO4), and concentrated in vacuo to give
the crude product. The acid was carried forward without further
purification. Quantitative yield was 24.4 mg, 0.038 mmol. Rf =
VDR Binding and Agonism Assays. VDR binding using a
flourescence polarization assay and VDR agonism/antagonism
assessed by PCR on CYP24 followed our published proce-
dures.7 For TSLP, the following primers were used: 50, -caacttg-
tagggct; 30, -gtcgattgaagcga..
1
0.30 (20% EtOAc in hexanes); H NMR (300 MHz, CDCl3)
δ 10.00-9.30 (1H, br s), 7.39 (1H, d, J = 15.5 Hz), 6.16 (1H, d,
J = 11.0 Hz), 5.82 (2H, m), 5.78 (1H, d, J = 15.5 Hz), 4.15-4.00
(2H, m), 2.87-2.78 (1H, m), 2.63-2.53 (1H, m), 2.44-2.24 (3H,
m), 2.16-1.96 (3H, m), 1.83 (3H, s), 1.82-1.36 (11H, m), 1.04
(3H, d, J = 6.5 Hz), 0.89 (9H, s), 0.88 (9H, s), 0.60 (3H, s), 0.06
(12H, m); 13C NMR (75 MHz, CDCl3) δ 173.1, 152.7, 149.8,
140.3, 134.0, 129.9, 121.7, 116.5, 114.8, 68.3, 68.1, 56.6, 56.3,
46.2, 46.0, 43.9, 40.7, 37.1, 36.4, 28.9, 27.5, 26.1 (6C), 23.6, 22.5,
20.1, 18.4 (2C), 12.9, 12.7, -4.3, -4.4, -4.5, -4.6; IR (film) ν
3000 (br), 2956, 1686, 1618, 1417, 1254, 1207, 1088, 1026, 908,
834, 801 cm-1. HRMS (ESI) m/z calcd for [(M þ H)þ], 643.4578;
found, 643.4570.
(R,2E,4E)-N-(2-Aminophenyl)-6-((1R,3aS,7aR,E)-4-(2-((3R,5R)-
3,5-bis(tert-butyldimethylsilyloxy)cyclohexylidene)ethylidene)-
7a-methyloctahydro-1H-inden-1-yl)-4-methylhepta-2,4-dien-
amide (8). HBTU (7.9 mg, 0.021 mmol, 1.1 equiv) was added to a
solution of acid 7 (12.2 mg, 0.019 mmol, 1 equiv), 1,2-phenyl-
enediamine (2.0 mg, 0.019 mmol, 1 equiv), HOBt (7.7 mg, 0.095
mmol, 5 equiv), and DIPEA (9.9 μL, 0.057 mmol, 3 equiv) in
DMF (190 μL). The mixture was stirred at room temperature for
1 h, then diluted with EtOAc (10 mL). The organic solution was
washed with saturated NaHCO3 (5 mL), water (5 mL), brine
(5 mL) and dried (Na2SO4). The solution was filtered, concen-
trated, and the oil was purified by silica gel chromatography
(10-30% EtOAc in hexanes) to provide 8 as a clear oil in 86%
yield (12 mg, 0.016 mmol). Rf = 0.6 (40% EtOAc in hexanes);
1H NMR (400 MHz, CDCl3) δ 7.35 (1H, d, J = 15.2 Hz), 7.23
HDAC Inhibition. HDAC inibition was measured using a
standard fluorometric assay.8,11
Chromatin Immunoprecipitation Assay. ChIP assays assessing
association of VDR coactivator AIB1 and corepressor NCoR
with the promoter of the CYP24 gene were performed eesen-
tially as described.19 AIB1 and NCoR were immunoprecipitated
with ChIP grade antibodies ab2831 and ab24552, respectively,
from Abcam (Cambridge, MA).
Molecular Modeling and Dynamics. Initial coordinates of
VDR ligand binding domain (LBD) were obtained from the
X-ray crystal structure of the VDR-LBD-1R,25(OH)2D3 com-
˚
plex (Protein Data Bank code 1DB1) determined at 1.80 A
resolution.14 Hydrogen atoms were added, and water molecules
were removed. The N(ε)-H tautomer of H397 was selected in
accordance with surrounding hydrogen bond network.14 Next,
hydrogen positions were optimized through energy minimiza-
tion of the VDR-LBD using OPLS_2005 in MacroModel
€
(Maestro 9.0, Schrodinger, Inc.). Ligands 4 and 5 were prepared
in Maestro 9.0 (Schrodinger, Inc.) and docked to the full-length
€
and H12-truncated (residues 417-423) VDR-LBD protein. Ten
docking runs were performed on the two ligands using the
FITTED docking program in the rigid protein mode and SAR
option.13 The structure of 1 cocrystallized with VDR-LBD, and
the top-ranking docked poses of 4 and 5 were selected for MD